Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47154 * 2 1 4 4 C 1.34224 * 117.00314 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99418 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00587 * 179.97438 * 4 3 2 7 7 C 1.53041 * 109.46015 * 59.92987 * 6 4 3 8 8 C 1.53187 * 109.31231 * 181.38730 * 7 6 4 9 9 N 1.46924 * 108.77929 * 305.36109 * 8 7 6 10 10 C 1.34774 * 120.63722 * 233.58999 * 9 8 7 11 11 O 1.21282 * 119.99601 * 354.60261 * 10 9 8 12 12 C 1.50695 * 120.00273 * 174.60250 * 10 9 8 13 13 H 1.09000 * 109.46998 * 315.60632 * 12 10 9 14 14 C 1.53001 * 109.47405 * 75.60399 * 12 10 9 15 15 N 1.46500 * 109.47160 * 195.60957 * 12 10 9 16 16 C 1.46508 * 119.99436 * 299.99464 * 15 12 10 17 17 C 1.36932 * 120.00115 * 119.99977 * 15 12 10 18 18 H 1.07998 * 120.00563 * 20.43145 * 17 15 12 19 19 C 1.38814 * 119.99496 * 200.42960 * 17 15 12 20 20 N 1.31624 * 120.00548 * 16.03787 * 19 17 15 21 21 Si 1.86807 * 119.99827 * 196.03234 * 19 17 15 22 22 H 1.48497 * 109.46885 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47070 * 120.00359 * 21 19 17 24 24 H 1.48498 * 109.47113 * 240.00138 * 21 19 17 25 25 C 1.46926 * 118.73372 * 53.61112 * 9 8 7 26 26 C 1.53036 * 109.46279 * 179.97438 * 6 4 3 27 27 H 1.08997 * 109.47403 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46913 * 300.00361 * 1 2 3 29 29 H 1.09005 * 109.46843 * 59.99921 * 1 2 3 30 30 H 1.08997 * 109.46901 * 240.00082 * 2 1 3 31 31 H 1.09000 * 109.46803 * 119.99585 * 2 1 3 32 32 H 1.08998 * 109.45758 * 299.97118 * 6 4 3 33 33 H 1.09004 * 109.49817 * 61.43799 * 7 6 4 34 34 H 1.09004 * 109.49761 * 301.34261 * 7 6 4 35 35 H 1.09007 * 109.58398 * 185.57948 * 8 7 6 36 36 H 1.08999 * 109.59058 * 65.15655 * 8 7 6 37 37 H 1.08998 * 109.47224 * 176.15441 * 14 12 10 38 38 H 1.09005 * 109.47058 * 296.15661 * 14 12 10 39 39 H 1.08998 * 109.46698 * 56.14853 * 14 12 10 40 40 H 1.08993 * 109.46734 * 95.64271 * 16 15 12 41 41 H 1.08995 * 109.46912 * 215.64030 * 16 15 12 42 42 H 1.08991 * 109.47173 * 335.64311 * 16 15 12 43 43 H 0.96993 * 120.00064 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58621 * 66.18020 * 25 9 8 45 45 H 1.08999 * 109.58698 * 186.46425 * 25 9 8 46 46 H 1.09005 * 109.49516 * 58.66658 * 26 6 4 47 47 H 1.08996 * 109.52939 * 298.58539 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.4470 3.6857 1.2481 8 6 4.0062 5.1117 1.2267 9 7 5.4667 5.0448 1.0814 10 6 6.2735 5.6791 1.9550 11 8 5.7972 6.3920 2.8128 12 6 7.7674 5.5025 1.8660 13 1 8.0004 4.4484 1.7154 14 6 8.3082 6.3173 0.6893 15 7 8.3890 5.9673 3.1085 16 6 8.2219 7.3589 3.5352 17 6 9.1262 5.1011 3.8710 18 1 9.5288 4.2014 3.4297 19 6 9.3560 5.3795 5.2114 20 7 8.6260 6.2830 5.8306 21 14 10.7012 4.4718 6.1366 22 1 11.3725 3.5148 5.2209 23 1 11.6964 5.4486 6.6473 24 1 10.1045 3.7310 7.2769 25 6 6.0310 4.2737 -0.0347 26 6 5.4490 2.8570 0.0014 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5856 3.4686 -0.8908 33 1 3.8029 3.1687 2.1393 34 1 2.3576 3.7221 1.2588 35 1 3.7545 5.6168 2.1593 36 1 3.5800 5.6588 0.3858 37 1 9.3955 6.2445 0.6661 38 1 7.8979 5.9269 -0.2420 39 1 8.0162 7.3610 0.8056 40 1 7.3945 7.4254 4.2415 41 1 9.1377 7.7043 4.0148 42 1 8.0093 7.9821 2.6667 43 1 8.7863 6.4772 6.7672 44 1 5.7699 4.7524 -0.9785 45 1 7.1155 4.2280 0.0642 46 1 5.7850 2.3036 -0.8756 47 1 5.7863 2.3477 0.9041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = -97.369404 kcal Electronic energy + Delta-G solvation = -27276.490124 eV Core-core repulsion = 23460.380849 eV Total energy + Delta-G solvation = -3816.109275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.91601 -39.64743 -37.44419 -36.58154 -35.26694 -33.23915 -32.12278 -31.78205 -30.98523 -29.01445 -26.58205 -25.85531 -24.20201 -23.61925 -23.20394 -22.15607 -21.04689 -20.07713 -18.49358 -17.90468 -17.10410 -16.80391 -16.56692 -15.87567 -15.55585 -15.03253 -14.69947 -14.53721 -14.01370 -13.89516 -13.73945 -13.65050 -13.33559 -13.10098 -12.91586 -12.53941 -12.39344 -12.28608 -12.14829 -11.94134 -11.79384 -11.58705 -11.44388 -11.21119 -10.91992 -10.80433 -10.79002 -10.76405 -10.69438 -10.54596 -10.40909 -10.29594 -9.92792 -9.79426 -8.96463 -8.41386 -8.26813 -6.71713 -5.66279 -3.12578 2.02586 2.42531 3.33732 3.43405 3.46444 3.48027 3.50127 4.33122 4.51298 4.53582 4.55134 4.61245 4.66436 4.93469 4.96884 4.99945 5.18794 5.24644 5.33210 5.39537 5.43031 5.47395 5.53267 5.56831 5.58438 5.63635 5.72837 5.76884 5.90538 5.98314 6.01008 6.08732 6.17887 6.24566 6.26118 6.47743 6.74283 6.90504 7.01911 7.52013 7.56928 7.81953 7.88703 8.11492 8.40579 8.97602 9.26467 9.89547 10.38054 11.35982 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017531 B = 0.003256 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.753783 B = 8597.815107 C = 9186.203272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.466 3.534 5 O -0.506 6.506 6 C -0.076 4.076 7 C -0.125 4.125 8 C 0.113 3.887 9 N -0.628 5.628 10 C 0.494 3.506 11 O -0.518 6.518 12 C 0.157 3.843 13 H 0.083 0.917 14 C -0.159 4.159 15 N -0.572 5.572 16 C 0.171 3.829 17 C -0.265 4.265 18 H 0.071 0.929 19 C 0.006 3.994 20 N -0.892 5.892 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.111 3.889 26 C -0.122 4.122 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.035 0.965 42 H -0.003 1.003 43 H 0.252 0.748 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.537 -7.957 -16.559 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.309 3.691 5 O -0.393 6.393 6 C -0.095 4.095 7 C -0.164 4.164 8 C -0.010 4.010 9 N -0.367 5.367 10 C 0.281 3.719 11 O -0.391 6.391 12 C 0.044 3.956 13 H 0.101 0.899 14 C -0.218 4.218 15 N -0.293 5.293 16 C 0.027 3.973 17 C -0.394 4.394 18 H 0.089 0.911 19 C -0.194 4.194 20 N -0.536 5.536 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.218 1.218 25 C -0.013 4.013 26 C -0.160 4.160 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.016 0.984 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.538 -7.771 -15.826 22.229 hybrid contribution 0.444 -0.889 0.582 1.152 sum -13.094 -8.660 -15.244 21.882 Atomic orbital electron populations 1.21806 0.92597 1.02951 1.03584 1.23024 0.95393 0.80356 1.02591 1.86509 1.24735 1.32266 1.83995 1.23878 0.80425 0.92818 0.71960 1.90673 1.60421 1.43179 1.45052 1.21109 0.96901 0.89432 1.02059 1.21943 1.01401 0.96691 0.96322 1.21420 0.81335 0.94943 1.03294 1.48642 1.05634 1.52999 1.29377 1.23119 0.91051 0.78152 0.79605 1.90651 1.76747 1.37184 1.34488 1.20472 0.86729 0.98458 0.89984 0.89906 1.22284 1.01974 1.00917 0.96653 1.43945 1.55611 1.07719 1.21990 1.20760 1.00257 0.81864 0.94459 1.19267 1.24421 1.04809 0.90916 0.91107 1.25054 0.99131 0.99084 0.96146 1.70173 1.38289 1.35272 1.09844 0.86202 0.81655 0.79013 0.79753 1.20223 1.21530 1.21775 1.21741 0.99863 0.89948 0.89723 1.21904 0.91719 0.97942 1.04483 0.90285 0.91361 0.91493 0.91317 0.91213 0.87266 0.90806 0.89765 0.88686 0.91973 0.91537 0.93131 0.92731 0.93797 0.94646 0.98424 0.93768 0.91597 0.88400 0.89961 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.78 10.10 -39.24 -0.40 -4.18 16 4 C 0.47 5.51 7.26 36.00 0.26 5.77 16 5 O -0.51 -7.36 15.73 -18.76 -0.30 -7.66 16 6 C -0.08 -0.78 2.59 -91.73 -0.24 -1.01 16 7 C -0.13 -1.41 5.30 -26.61 -0.14 -1.55 16 8 C 0.11 1.49 6.42 -3.71 -0.02 1.47 16 9 N -0.63 -9.58 2.97 -172.77 -0.51 -10.09 16 10 C 0.49 10.09 6.94 -10.99 -0.08 10.02 16 11 O -0.52 -12.95 14.00 5.56 0.08 -12.87 16 12 C 0.16 3.22 2.26 -69.08 -0.16 3.07 16 13 H 0.08 1.62 6.79 -51.93 -0.35 1.27 16 14 C -0.16 -2.63 8.78 37.16 0.33 -2.31 16 15 N -0.57 -14.89 2.70 -174.82 -0.47 -15.36 16 16 C 0.17 4.56 7.36 59.85 0.44 5.00 16 17 C -0.26 -7.41 9.61 -15.06 -0.14 -7.55 16 18 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 19 C 0.01 0.16 5.05 -17.43 -0.09 0.07 16 20 N -0.89 -27.17 10.73 55.49 0.60 -26.58 16 21 Si 0.90 22.19 29.58 -169.99 -5.03 17.17 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.11 1.27 5.45 -3.71 -0.02 1.25 16 26 C -0.12 -1.35 4.65 -26.61 -0.12 -1.48 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.09 1.49 7.04 -51.93 -0.37 1.13 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.65 6.22 -51.93 -0.32 0.32 16 39 H 0.05 0.96 6.82 -51.93 -0.35 0.60 16 40 H 0.04 1.32 6.65 -51.93 -0.35 0.98 16 41 H 0.03 0.98 7.28 -51.93 -0.38 0.61 16 42 H 0.00 -0.07 6.51 -51.93 -0.34 -0.41 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.10 1.14 4.68 -51.93 -0.24 0.89 16 46 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 47 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -35.47 369.07 -7.57 -43.05 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.73 Total: -2.02 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 0.63 Total: 12.98 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.39 Total: -52.03 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.61 Total: -24.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.47 -7.57 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.321 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds