Wall clock time and date at job start Tue Mar 31 2020 04:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00100 * 2 1 4 4 O 1.20823 * 119.99803 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00156 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47303 * 174.71708 * 5 3 2 7 7 C 1.36945 * 119.99750 * 263.95548 * 6 5 3 8 8 H 1.07998 * 120.00163 * 202.65100 * 7 6 5 9 9 C 1.38816 * 119.99882 * 22.65738 * 7 6 5 10 10 N 1.31622 * 120.00001 * 20.74798 * 9 7 6 11 11 Si 1.86791 * 119.99868 * 200.75062 * 9 7 6 12 12 H 1.48497 * 109.47408 * 89.99525 * 11 9 7 13 13 H 1.48501 * 109.47177 * 210.00034 * 11 9 7 14 14 H 1.48501 * 109.47196 * 329.99837 * 11 9 7 15 15 C 1.46496 * 120.00267 * 83.95273 * 6 5 3 16 16 C 1.50702 * 109.46921 * 85.63397 * 15 6 5 17 17 O 1.21282 * 120.00041 * 3.43089 * 16 15 6 18 18 N 1.34774 * 120.00187 * 183.43536 * 16 15 6 19 19 C 1.46929 * 120.63061 * 5.15431 * 18 16 15 20 20 H 1.09003 * 109.58363 * 6.63080 * 19 18 16 21 21 C 1.52999 * 109.58718 * 246.20679 * 19 18 16 22 22 C 1.53621 * 108.54384 * 126.36811 * 19 18 16 23 23 C 1.53039 * 109.24175 * 54.85666 * 22 19 18 24 24 C 1.53035 * 109.53915 * 298.51247 * 23 22 19 25 25 C 1.46921 * 120.63442 * 185.43529 * 18 16 15 26 26 H 1.09004 * 109.59024 * 113.79773 * 25 18 16 27 27 C 1.52999 * 109.58559 * 353.51584 * 25 18 16 28 28 H 1.08993 * 109.46989 * 60.00236 * 1 2 3 29 29 H 1.09007 * 109.46777 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47024 * 299.99328 * 1 2 3 31 31 H 1.09010 * 109.47441 * 294.71737 * 5 3 2 32 32 H 1.09001 * 109.46967 * 54.71235 * 5 3 2 33 33 H 0.96995 * 119.99748 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47332 * 205.62839 * 15 6 5 35 35 H 1.08994 * 109.47122 * 325.63509 * 15 6 5 36 36 H 1.08995 * 109.47401 * 59.99601 * 21 19 18 37 37 H 1.09000 * 109.46801 * 179.97438 * 21 19 18 38 38 H 1.09002 * 109.46629 * 299.99145 * 21 19 18 39 39 H 1.09006 * 109.63167 * 294.86545 * 22 19 18 40 40 H 1.09000 * 109.43132 * 174.73047 * 22 19 18 41 41 H 1.09004 * 109.45808 * 178.49140 * 23 22 19 42 42 H 1.08997 * 109.44976 * 58.52641 * 23 22 19 43 43 H 1.09000 * 109.49733 * 301.40990 * 24 23 22 44 44 H 1.08998 * 109.49767 * 181.32012 * 24 23 22 45 45 H 1.09000 * 109.47633 * 62.77783 * 27 25 18 46 46 H 1.09000 * 109.47663 * 182.77820 * 27 25 18 47 47 H 1.09001 * 109.47373 * 302.77480 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9820 2.6738 -0.1267 7 6 4.3022 3.1837 -1.3567 8 1 4.9381 4.0534 -1.4318 9 6 3.8094 2.5828 -2.5069 10 7 2.7443 1.8122 -2.4421 11 14 4.6578 2.8677 -4.1464 12 1 5.7014 1.8311 -4.3506 13 1 3.6583 2.7864 -5.2417 14 1 5.2883 4.2122 -4.1505 15 6 4.0552 3.5273 1.0617 16 6 5.3981 3.3533 1.7232 17 8 6.2365 2.6394 1.2149 18 7 5.6674 3.9910 2.8796 19 6 4.6264 4.7683 3.5658 20 1 3.6706 4.6236 3.0622 21 6 4.9990 6.2521 3.5486 22 6 4.5256 4.2754 5.0173 23 6 5.9055 4.3560 5.6743 24 6 6.8832 3.4483 4.9244 25 6 7.0091 3.9273 3.4748 26 1 7.4650 4.9172 3.4553 27 6 7.8761 2.9477 2.6814 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9513 0.8649 0.9344 32 1 3.9605 0.7008 -0.8380 33 1 2.4002 1.3920 -3.2458 34 1 3.9267 4.5694 0.7691 35 1 3.2670 3.2461 1.7601 36 1 5.0849 6.5932 2.5169 37 1 4.2253 6.8269 4.0577 38 1 5.9519 6.3933 4.0586 39 1 4.1764 3.2429 5.0300 40 1 3.8241 4.9040 5.5659 41 1 5.8328 4.0323 6.7126 42 1 6.2648 5.3845 5.6388 43 1 6.5118 2.4237 4.9381 44 1 7.8597 3.4882 5.4070 45 1 7.9946 3.3116 1.6608 46 1 8.8551 2.8644 3.1533 47 1 7.3965 1.9690 2.6647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080872521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:21 Heat of formation + Delta-G solvation = -81.948105 kcal Electronic energy + Delta-G solvation = -28351.290413 eV Core-core repulsion = 24535.849856 eV Total energy + Delta-G solvation = -3815.440557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.25630 -38.93029 -37.34697 -35.69669 -34.48313 -33.40447 -32.51800 -31.30261 -29.16102 -28.28595 -26.70528 -26.38202 -25.87242 -23.46925 -22.66559 -21.45583 -20.45092 -19.71810 -18.06832 -16.88092 -16.54631 -16.06766 -15.80292 -15.34937 -15.11023 -15.05059 -14.77600 -14.60295 -14.01436 -13.82306 -13.37289 -13.33404 -13.16098 -12.78748 -12.59511 -12.45035 -12.22048 -12.16891 -11.79667 -11.63477 -11.55161 -11.35986 -11.12682 -10.97781 -10.90503 -10.82468 -10.69679 -10.52924 -10.47904 -10.37889 -10.07139 -10.01208 -9.60270 -9.21280 -8.67954 -8.33745 -8.14678 -6.95797 -5.90388 -3.27384 3.31085 3.36924 3.40706 3.46645 3.48625 3.85121 4.06386 4.48975 4.65143 4.78965 4.81557 5.01580 5.17569 5.22541 5.32511 5.36821 5.42282 5.46330 5.51278 5.66982 5.70519 5.80763 5.83537 5.86381 5.89762 5.92306 5.96915 6.05948 6.06735 6.11229 6.13319 6.16465 6.28882 6.32218 6.33270 6.52053 6.71063 6.74207 6.97973 7.08759 7.69796 7.77904 7.92332 8.20090 8.93916 9.03770 9.37230 9.69350 10.13457 11.20699 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.004912 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.623058 B = 5698.615386 C = 6782.261891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.381 6.381 3 C 0.469 3.531 4 O -0.509 6.509 5 C 0.195 3.805 6 N -0.541 5.541 7 C -0.253 4.253 8 H 0.075 0.925 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.912 3.088 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.279 1.279 15 C 0.133 3.867 16 C 0.484 3.516 17 O -0.513 6.513 18 N -0.616 5.616 19 C 0.134 3.866 20 H 0.095 0.905 21 C -0.163 4.163 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.130 4.130 25 C 0.144 3.856 26 H 0.060 0.940 27 C -0.132 4.132 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.258 0.742 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.031 0.969 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 3.187 15.471 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.298 6.298 3 C 0.309 3.691 4 O -0.394 6.394 5 C 0.066 3.934 6 N -0.258 5.258 7 C -0.381 4.381 8 H 0.093 0.907 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.742 3.258 12 H -0.212 1.212 13 H -0.219 1.219 14 H -0.205 1.205 15 C 0.002 3.998 16 C 0.271 3.729 17 O -0.387 6.387 18 N -0.354 5.354 19 C 0.030 3.970 20 H 0.113 0.887 21 C -0.221 4.221 22 C -0.167 4.167 23 C -0.156 4.156 24 C -0.169 4.169 25 C 0.040 3.960 26 H 0.078 0.922 27 C -0.190 4.190 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.050 0.950 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.015 3.018 14.972 15.568 hybrid contribution -0.040 0.293 -0.900 0.948 sum 2.975 3.311 14.072 14.759 Atomic orbital electron populations 1.22847 0.79749 1.01288 1.01248 1.86528 1.20997 1.36593 1.85720 1.25361 0.93380 0.80227 0.70140 1.90442 1.66712 1.36423 1.45800 1.20023 0.85361 0.87139 1.00916 1.43328 1.74248 1.05702 1.02560 1.19149 1.23777 1.13399 0.81807 0.90713 1.24897 0.95786 1.00332 0.98214 1.69767 1.20395 1.35734 1.28424 0.86130 0.78709 0.78077 0.82847 1.21240 1.21908 1.20452 1.20762 0.91314 0.97346 0.90348 1.22903 0.92241 0.78647 0.79140 1.90682 1.47677 1.37088 1.63290 1.48527 1.10687 1.52149 1.24028 1.21323 0.91921 0.90906 0.92865 0.88676 1.22163 1.01862 0.95505 1.02591 1.21992 0.97389 1.01958 0.95385 1.21530 0.95291 1.00066 0.98758 1.22000 0.99375 0.99997 0.95502 1.21139 0.83663 0.98934 0.92246 0.92156 1.22187 0.96422 1.00272 1.00069 0.92754 0.90180 0.93692 0.92890 0.87717 0.93212 0.89835 0.91818 0.92021 0.91750 0.92300 0.91470 0.91061 0.92149 0.91749 0.91608 0.91485 0.90704 0.95012 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.42 10.57 -39.25 -0.41 -8.83 16 3 C 0.47 11.53 5.91 36.00 0.21 11.74 16 4 O -0.51 -13.72 15.70 -18.75 -0.29 -14.01 16 5 C 0.20 4.73 5.51 -5.20 -0.03 4.70 16 6 N -0.54 -13.49 1.54 -175.99 -0.27 -13.76 16 7 C -0.25 -6.91 9.58 -15.05 -0.14 -7.06 16 8 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 9 C 0.01 0.17 4.84 -17.43 -0.08 0.09 16 10 N -0.90 -25.78 9.38 55.49 0.52 -25.26 16 11 Si 0.91 22.15 29.60 -169.99 -5.03 17.12 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.13 2.74 4.52 -5.19 -0.02 2.71 16 16 C 0.48 9.19 7.67 -10.99 -0.08 9.11 16 17 O -0.51 -11.34 11.83 5.56 0.07 -11.27 16 18 N -0.62 -9.10 2.68 -157.48 -0.42 -9.52 16 19 C 0.13 1.59 3.12 -67.37 -0.21 1.38 16 20 H 0.10 1.19 5.89 -51.93 -0.31 0.88 16 21 C -0.16 -1.67 9.03 37.16 0.34 -1.33 16 22 C -0.13 -1.28 5.58 -26.39 -0.15 -1.43 16 23 C -0.12 -1.09 5.68 -26.69 -0.15 -1.24 16 24 C -0.13 -1.40 5.38 -26.61 -0.14 -1.55 16 25 C 0.14 1.91 3.07 -67.60 -0.21 1.70 16 26 H 0.06 0.76 7.48 -51.93 -0.39 0.37 16 27 C -0.13 -2.02 7.60 37.16 0.28 -1.73 16 28 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 29 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.05 1.16 8.12 -51.92 -0.42 0.74 16 32 H 0.10 2.75 6.78 -51.93 -0.35 2.40 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 34 H 0.08 1.68 8.00 -51.93 -0.42 1.27 16 35 H 0.06 1.23 7.25 -51.93 -0.38 0.86 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.57 5.71 -51.93 -0.30 0.27 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.55 6.49 -51.93 -0.34 0.22 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.34 6.67 -51.93 -0.35 1.00 16 46 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 1.22 6.83 -51.93 -0.35 0.87 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -32.64 365.64 -7.46 -40.10 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.79 Total: 0.98 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: 0.67 Total: 18.95 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.17 Total: -48.54 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.64 Total: -34.11 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.64 -7.46 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.850 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds