Wall clock time and date at job start Tue Mar 31 2020 04:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47684 * 2 1 4 4 O 1.21288 * 119.99575 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00238 * 180.02562 * 3 2 1 6 6 C 1.47016 * 125.64787 * 359.97438 * 5 3 2 7 7 C 1.54326 * 107.27101 * 178.97425 * 6 5 3 8 8 C 1.55160 * 102.94146 * 337.81197 * 7 6 5 9 9 H 1.09003 * 110.99795 * 277.38789 * 8 7 6 10 10 C 1.50699 * 111.00353 * 153.57776 * 8 7 6 11 11 O 1.21280 * 119.99758 * 266.77910 * 10 8 7 12 12 N 1.34771 * 120.00166 * 86.78438 * 10 8 7 13 13 C 1.46498 * 120.00127 * 5.64667 * 12 10 8 14 14 C 1.50694 * 109.47196 * 270.00172 * 13 12 10 15 15 H 1.07998 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00186 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00310 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99798 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 89.99951 * 18 16 14 20 20 H 1.48507 * 109.47400 * 209.99947 * 18 16 14 21 21 H 1.48496 * 109.47370 * 330.00079 * 18 16 14 22 22 C 1.46499 * 119.99961 * 185.65040 * 12 10 8 23 23 C 1.52997 * 109.47092 * 264.64723 * 22 12 10 24 24 O 1.42896 * 109.47260 * 64.76917 * 23 22 12 25 25 C 1.42901 * 114.00393 * 179.97438 * 24 23 22 26 26 C 1.47469 * 125.62827 * 179.97438 * 5 3 2 27 27 H 1.09002 * 109.47270 * 59.99363 * 1 2 3 28 28 H 1.09000 * 109.47459 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46492 * 299.99753 * 1 2 3 30 30 H 1.09007 * 109.46492 * 240.00247 * 2 1 3 31 31 H 1.09002 * 109.47270 * 120.00637 * 2 1 3 32 32 H 1.09004 * 109.88035 * 59.56170 * 6 5 3 33 33 H 1.08999 * 109.88692 * 298.39149 * 6 5 3 34 34 H 1.08996 * 110.72060 * 219.44614 * 7 6 5 35 35 H 1.08999 * 110.87256 * 96.24107 * 7 6 5 36 36 H 1.09003 * 109.47013 * 30.00524 * 13 12 10 37 37 H 1.09000 * 109.47053 * 150.00386 * 13 12 10 38 38 H 0.97007 * 120.00177 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.47432 * 144.64598 * 22 12 10 40 40 H 1.09002 * 109.46923 * 24.64817 * 22 12 10 41 41 H 1.09000 * 109.47391 * 304.76840 * 23 22 12 42 42 H 1.09006 * 109.47420 * 184.77068 * 23 22 12 43 43 H 1.08996 * 109.47584 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.47274 * 300.00402 * 25 24 23 45 45 H 1.09000 * 109.46916 * 59.99957 * 25 24 23 46 46 H 1.09008 * 110.34607 * 85.25472 * 26 5 3 47 47 H 1.09000 * 110.40496 * 322.92334 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3576 1.6669 -0.0005 6 6 4.4182 0.6489 -0.0006 7 6 5.7691 1.3946 -0.0276 8 6 5.3892 2.7807 -0.6123 9 1 5.3409 2.7457 -1.7007 10 6 6.3525 3.8439 -0.1511 11 8 6.1044 4.4985 0.8392 12 7 7.4896 4.0673 -0.8392 13 6 7.7315 3.3653 -2.1020 14 6 8.4502 2.0697 -1.8269 15 1 8.7020 1.7966 -0.8128 16 6 8.7863 1.2327 -2.8697 17 7 9.4131 0.1018 -2.6296 18 14 8.3515 1.7053 -4.6239 19 1 9.4670 2.4853 -5.2175 20 1 8.1251 0.4762 -5.4261 21 1 7.1166 2.5300 -4.6227 22 6 8.4837 5.0121 -0.3242 23 6 8.2655 6.3830 -0.9674 24 8 6.9977 6.9029 -0.5622 25 6 6.6942 8.1875 -1.1099 26 6 3.9832 3.0024 -0.0011 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.3257 0.0173 -0.8842 33 1 4.3485 0.0408 0.9013 34 1 6.4789 0.8832 -0.6778 35 1 6.1754 1.4987 0.9784 36 1 6.7793 3.1562 -2.5897 37 1 8.3438 3.9892 -2.7530 38 1 9.6493 -0.4872 -3.3633 39 1 9.4846 4.6532 -0.5643 40 1 8.3780 5.0972 0.7573 41 1 8.2871 6.2829 -2.0526 42 1 9.0556 7.0634 -0.6496 43 1 5.7160 8.5119 -0.7552 44 1 7.4517 8.9051 -0.7947 45 1 6.6834 8.1251 -2.1980 46 1 4.0678 3.3817 1.0173 47 1 3.4061 3.6921 -0.6170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161826021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:44 Heat of formation + Delta-G solvation = -115.256906 kcal Electronic energy + Delta-G solvation = -27517.997812 eV Core-core repulsion = 23701.112877 eV Total energy + Delta-G solvation = -3816.884935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16231 -39.11694 -37.58514 -36.67960 -35.10089 -32.88921 -32.66417 -31.53860 -29.90091 -28.81801 -27.65936 -26.18707 -25.16568 -23.09524 -22.79316 -22.23711 -20.97466 -18.97076 -18.19254 -17.15113 -17.03836 -16.99636 -16.26790 -15.98969 -15.53436 -15.16639 -15.11268 -14.76323 -14.34818 -14.18620 -13.74762 -13.34804 -13.17128 -13.06878 -12.69699 -12.53810 -12.35348 -12.24191 -12.12557 -11.95116 -11.76601 -11.72217 -11.58192 -11.38338 -11.20343 -11.08382 -10.86655 -10.72896 -10.62855 -10.42278 -10.22751 -9.73175 -9.66566 -9.43381 -9.04536 -8.77819 -8.42820 -7.77520 -6.30465 -4.31551 2.77581 3.10250 3.10729 3.19156 3.21883 3.32665 3.80164 4.09059 4.18874 4.57651 4.84311 4.99202 5.00535 5.03578 5.12365 5.24732 5.30786 5.38234 5.45197 5.46216 5.53246 5.57306 5.58809 5.63572 5.68915 5.73019 5.76687 5.84219 5.87997 6.00972 6.08077 6.14695 6.23029 6.29609 6.34630 6.40552 6.52406 6.67058 6.71633 7.25658 7.36761 7.46424 7.68901 8.09083 8.30629 8.35095 8.74417 8.95128 9.29712 10.81326 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.009557 B = 0.005231 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.133125 B = 5351.737300 C = 7390.838137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.140 4.140 3 C 0.524 3.476 4 O -0.549 6.549 5 N -0.618 5.618 6 C 0.101 3.899 7 C -0.113 4.113 8 C -0.115 4.115 9 H 0.104 0.896 10 C 0.536 3.464 11 O -0.550 6.550 12 N -0.587 5.587 13 C 0.207 3.793 14 C -0.538 4.538 15 H 0.082 0.918 16 C 0.079 3.921 17 N -0.888 5.888 18 Si 0.866 3.134 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.122 3.878 23 C 0.044 3.956 24 O -0.370 6.370 25 C 0.032 3.968 26 C 0.122 3.878 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.027 0.973 38 H 0.267 0.733 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.083 0.917 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 3.027 1.704 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.180 4.180 3 C 0.313 3.687 4 O -0.427 6.427 5 N -0.352 5.352 6 C -0.022 4.022 7 C -0.151 4.151 8 C -0.137 4.137 9 H 0.122 0.878 10 C 0.323 3.677 11 O -0.429 6.429 12 N -0.317 5.317 13 C 0.085 3.915 14 C -0.576 4.576 15 H 0.100 0.900 16 C -0.125 4.125 17 N -0.526 5.526 18 Si 0.693 3.307 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.002 4.002 23 C -0.034 4.034 24 O -0.288 6.288 25 C -0.065 4.065 26 C 0.000 4.000 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.102 0.898 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.671 3.563 2.246 8.752 hybrid contribution 0.381 0.234 -1.484 1.550 sum -7.291 3.796 0.762 8.255 Atomic orbital electron populations 1.21526 0.93218 1.01327 1.03249 1.21609 0.98256 0.93814 1.04331 1.20420 0.80407 0.91824 0.76001 1.90684 1.54471 1.46821 1.50732 1.48618 1.05190 1.08585 1.72817 1.22165 0.87066 0.91301 1.01660 1.22656 0.96065 0.93449 1.02971 1.22338 0.93503 0.95555 1.02306 0.87767 1.19829 0.81915 0.82842 0.83121 1.90630 1.75645 1.49435 1.27210 1.47717 1.18073 1.41703 1.24221 1.19835 0.97160 0.92935 0.81530 1.21363 1.37914 1.02164 0.96164 0.90015 1.24839 0.94319 0.94709 0.98616 1.69879 1.39361 1.10892 1.32441 0.87006 0.79633 0.78607 0.85455 1.19999 1.20878 1.18944 1.21355 0.92813 0.86146 0.99868 1.23056 0.85715 0.95832 0.98789 1.88112 1.36405 1.33128 1.71203 1.22679 1.00779 0.85554 0.97512 1.22096 0.91400 0.84241 1.02303 0.92074 0.92216 0.92091 0.88930 0.89036 0.90956 0.91331 0.86317 0.90715 0.94822 0.95546 0.92329 0.88769 0.89718 0.93367 0.93120 0.90099 0.94680 0.94673 0.89847 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.20 37.16 0.34 -1.06 16 2 C -0.14 -1.52 5.61 -27.88 -0.16 -1.68 16 3 C 0.52 8.07 7.85 -10.99 -0.09 7.98 16 4 O -0.55 -10.40 16.24 5.55 0.09 -10.31 16 5 N -0.62 -9.51 3.33 -170.49 -0.57 -10.08 16 6 C 0.10 1.36 6.49 -3.07 -0.02 1.34 16 7 C -0.11 -1.84 6.22 -24.89 -0.15 -2.00 16 8 C -0.12 -2.03 2.72 -89.63 -0.24 -2.27 16 9 H 0.10 1.86 6.17 -51.93 -0.32 1.54 16 10 C 0.54 10.63 6.67 -10.99 -0.07 10.56 16 11 O -0.55 -12.08 14.76 4.92 0.07 -12.01 16 12 N -0.59 -11.41 2.41 -175.06 -0.42 -11.83 16 13 C 0.21 4.24 4.01 -5.20 -0.02 4.22 16 14 C -0.54 -12.70 8.38 -34.44 -0.29 -12.99 16 15 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 16 C 0.08 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.89 -23.81 13.96 55.43 0.77 -23.04 16 18 Si 0.87 18.67 27.47 -169.99 -4.67 14.00 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 22 C 0.12 2.09 5.83 -4.04 -0.02 2.07 16 23 C 0.04 0.67 6.28 37.16 0.23 0.90 16 24 O -0.37 -6.34 9.89 -35.86 -0.35 -6.69 16 25 C 0.03 0.41 11.01 101.05 1.11 1.52 16 26 C 0.12 2.11 6.20 -2.51 -0.02 2.09 16 27 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.12 2.18 6.73 -51.93 -0.35 1.83 16 35 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 36 H 0.03 0.69 5.07 -51.93 -0.26 0.43 16 37 H 0.03 0.53 7.50 -51.93 -0.39 0.14 16 38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 40 H 0.08 1.51 7.35 -51.93 -0.38 1.13 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 1.55 7.21 -51.92 -0.37 1.18 16 47 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -30.70 378.96 -6.85 -37.55 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.99 Total: 4.15 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 0.51 Total: 12.53 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.22 Total: -44.94 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.19 Total: -29.01 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.67 Total: 14.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.70 -6.85 -37.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161826021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.704 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds