Wall clock time and date at job start Tue Mar 31 2020 04:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.78505 * 2 1 4 4 C 1.55163 * 110.71700 * 236.75776 * 2 1 3 5 5 C 1.55128 * 101.48381 * 205.97278 * 4 2 1 6 6 N 1.47424 * 104.72536 * 37.29739 * 5 4 2 7 7 C 1.34777 * 125.65360 * 155.81281 * 6 5 4 8 8 O 1.21346 * 120.00283 * 179.69185 * 7 6 5 9 9 C 1.49452 * 119.99678 * 359.69634 * 7 6 5 10 10 O 1.21353 * 119.99675 * 359.97438 * 9 7 6 11 11 N 1.34769 * 120.00165 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00237 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46998 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 299.99786 * 13 12 11 15 15 C 1.52992 * 109.47223 * 60.00291 * 13 12 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 13 12 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99500 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00390 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46921 * 60.00425 * 20 18 16 22 22 H 1.48496 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46946 * 300.00108 * 20 18 16 24 24 C 1.47030 * 108.70105 * 335.55137 * 6 5 4 25 25 H 1.08993 * 109.88350 * 241.86910 * 24 6 5 26 26 C 1.53000 * 109.88179 * 120.85761 * 24 6 5 27 27 O 1.42899 * 109.47403 * 66.45408 * 26 24 6 28 28 H 1.09000 * 109.46643 * 296.76745 * 1 2 3 29 29 H 1.09009 * 109.46544 * 56.75769 * 1 2 3 30 30 H 1.08991 * 109.47238 * 176.76125 * 1 2 3 31 31 H 1.08996 * 111.00384 * 324.21178 * 4 2 1 32 32 H 1.08998 * 111.00104 * 88.02533 * 4 2 1 33 33 H 1.08998 * 110.50059 * 278.45584 * 5 4 2 34 34 H 1.09003 * 110.34355 * 156.05990 * 5 4 2 35 35 H 0.97003 * 120.00232 * 0.02562 * 11 9 7 36 36 H 1.08993 * 109.47452 * 60.00368 * 12 11 9 37 37 H 1.09000 * 109.47175 * 300.00158 * 12 11 9 38 38 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 40 40 H 1.09004 * 109.47261 * 300.00303 * 14 13 12 41 41 H 1.09001 * 109.47066 * 299.99881 * 15 13 12 42 42 H 1.08996 * 109.47747 * 59.99547 * 15 13 12 43 43 H 1.09002 * 109.47103 * 179.97438 * 15 13 12 44 44 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.47118 * 186.45318 * 26 24 6 46 46 H 1.09000 * 109.47045 * 306.45537 * 26 24 6 47 47 H 0.96695 * 114.00681 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0789 -0.7956 -1.2138 5 6 3.4665 -1.2457 -0.6861 6 7 3.2445 -1.5509 0.7390 7 6 3.9921 -2.3838 1.4898 8 8 3.7191 -2.5563 2.6595 9 6 5.1575 -3.0949 0.8817 10 8 5.4303 -2.9226 -0.2881 11 7 5.9055 -3.9274 1.6325 12 6 7.0476 -4.6249 1.0363 13 6 7.7200 -5.5006 2.0956 14 6 8.2052 -4.6221 3.2505 15 6 6.7145 -6.5263 2.6225 16 6 8.8944 -6.2185 1.4821 17 1 9.1372 -6.0652 0.4410 18 6 9.6596 -7.0703 2.2502 19 7 9.3642 -7.2566 3.5181 20 14 11.1149 -7.9608 1.4896 21 1 12.0909 -6.9660 0.9767 22 1 11.7675 -8.8106 2.5177 23 1 10.6428 -8.8140 0.3697 24 6 2.0760 -0.7912 1.2073 25 1 2.3741 -0.1025 1.9977 26 6 1.0064 -1.7519 1.7306 27 8 1.4868 -2.4044 2.9077 28 1 -0.3632 0.4628 0.9176 29 1 -0.3633 0.5634 -0.8596 30 1 -0.3633 -1.0259 -0.0581 31 1 1.4451 -1.6536 -1.4374 32 1 2.1843 -0.1521 -2.0873 33 1 4.1947 -0.4417 -0.7928 34 1 3.8030 -2.1364 -1.2168 35 1 5.6873 -4.0654 2.5676 36 1 7.7637 -3.8942 0.6606 37 1 6.7019 -5.2510 0.2138 38 1 8.6846 -5.2459 4.0049 39 1 7.3554 -4.1032 3.6941 40 1 8.9216 -3.8913 2.8750 41 1 5.8648 -6.0074 3.0661 42 1 6.3688 -7.1521 1.7998 43 1 7.1937 -7.1504 3.3768 44 1 9.9027 -7.8555 4.0586 45 1 0.1013 -1.1932 1.9688 46 1 0.7829 -2.4975 0.9675 47 1 0.8590 -3.0294 3.2951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422480098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:00 Heat of formation + Delta-G solvation = -114.077933 kcal Electronic energy + Delta-G solvation = -27374.143465 eV Core-core repulsion = 23557.309654 eV Total energy + Delta-G solvation = -3816.833811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.71161 -39.11626 -37.48592 -36.47942 -36.14130 -33.60337 -32.89917 -30.84096 -30.48032 -27.87806 -26.06557 -25.68534 -25.22722 -24.81623 -23.58967 -22.08447 -20.02723 -19.21982 -18.77484 -17.93248 -17.17316 -16.59692 -16.31243 -15.82414 -15.32716 -15.11716 -14.79875 -14.63576 -14.14506 -13.87339 -13.63844 -13.48150 -13.23011 -12.95865 -12.85312 -12.80784 -12.49519 -12.21697 -12.16588 -11.74481 -11.38451 -11.35453 -11.20887 -11.14432 -10.93444 -10.83797 -10.71917 -10.57857 -10.36074 -10.17370 -9.94850 -9.61397 -9.41756 -9.00354 -8.77156 -8.66607 -8.49809 -8.33434 -6.00126 -4.11019 1.88346 2.57789 3.31065 3.35650 3.38630 3.64146 3.81547 4.01287 4.24058 4.37502 4.41451 4.58320 4.88939 4.98670 5.01338 5.06051 5.11603 5.19130 5.26245 5.32056 5.38522 5.47772 5.65498 5.71036 5.80432 5.89986 5.97178 6.16728 6.23577 6.27976 6.51395 6.71150 6.89516 6.89948 6.99562 7.04279 7.33883 7.38712 7.58661 7.68010 7.70345 7.79961 8.03347 8.11173 8.21807 8.38833 8.51359 8.89059 9.54657 11.01227 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.002944 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.650221 B = 9509.698147 C =10100.672754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.132 4.132 5 C 0.097 3.903 6 N -0.596 5.596 7 C 0.512 3.488 8 O -0.478 6.478 9 C 0.498 3.502 10 O -0.536 6.536 11 N -0.682 5.682 12 C 0.129 3.871 13 C 0.057 3.943 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.508 4.508 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.142 3.858 25 H 0.081 0.919 26 C 0.062 3.938 27 O -0.537 6.537 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.410 0.590 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.009 0.991 40 H 0.027 0.973 41 H 0.009 0.991 42 H 0.027 0.973 43 H 0.087 0.913 44 H 0.261 0.739 45 H 0.054 0.946 46 H 0.043 0.957 47 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.502 13.337 -5.789 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.170 4.170 5 C -0.025 4.025 6 N -0.333 5.333 7 C 0.295 3.705 8 O -0.349 6.349 9 C 0.278 3.722 10 O -0.415 6.415 11 N -0.333 5.333 12 C 0.007 3.993 13 C 0.056 3.944 14 C -0.191 4.191 15 C -0.191 4.191 16 C -0.547 4.547 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.038 3.962 25 H 0.099 0.901 26 C -0.017 4.017 27 O -0.340 6.340 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.248 0.752 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.028 0.972 40 H 0.046 0.954 41 H 0.028 0.972 42 H 0.046 0.954 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.759 13.528 -5.848 23.078 hybrid contribution 0.198 -0.828 0.065 0.853 sum -17.561 12.700 -5.784 22.431 Atomic orbital electron populations 1.21879 0.93785 1.02414 1.02267 1.22217 0.96409 0.99346 0.93728 0.89096 1.23011 0.96404 1.00207 0.97417 1.22665 0.96366 1.02803 0.80688 1.48235 1.29041 1.44147 1.11831 1.20099 0.83732 0.80259 0.86430 1.90835 1.68050 1.61009 1.15012 1.20044 0.84048 0.81363 0.86779 1.90649 1.70553 1.64229 1.16055 1.46197 1.29592 1.42507 1.15017 1.21905 0.85009 0.94720 0.97620 1.18362 0.93498 0.91397 0.91131 1.21854 0.98012 0.98474 1.00784 1.21849 0.96233 0.99885 1.01112 1.20923 1.11511 1.25627 0.96590 0.92435 1.24882 0.97410 0.96360 0.94821 1.69804 1.39339 1.37052 1.06094 0.86619 0.82634 0.79658 0.78848 1.20283 1.21324 1.20293 1.21611 0.85524 0.92527 0.96525 0.90087 1.22671 0.95604 0.95034 0.88353 1.86979 1.44634 1.60504 1.41892 0.92053 0.91894 0.92020 0.90508 0.89618 0.91189 0.87881 0.75240 0.92143 0.92170 0.89465 0.97226 0.95393 0.97235 0.95420 0.89474 0.92899 0.92768 0.93869 0.78826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 7.94 37.16 0.30 -0.49 16 2 C -0.10 -0.71 3.47 -88.78 -0.31 -1.02 16 3 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -1.02 6.54 -24.46 -0.16 -1.18 16 5 C 0.10 1.12 6.08 -2.41 -0.01 1.10 16 6 N -0.60 -8.20 3.08 -163.38 -0.50 -8.70 16 7 C 0.51 8.80 7.66 -11.58 -0.09 8.72 16 8 O -0.48 -9.08 13.57 -18.93 -0.26 -9.34 16 9 C 0.50 9.30 7.86 -11.59 -0.09 9.21 16 10 O -0.54 -10.50 13.77 5.49 0.08 -10.42 16 11 N -0.68 -13.31 4.95 -60.73 -0.30 -13.61 16 12 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 13 C 0.06 1.35 0.50 -155.66 -0.08 1.27 16 14 C -0.13 -3.14 8.08 37.16 0.30 -2.84 16 15 C -0.13 -3.11 8.08 37.15 0.30 -2.81 16 16 C -0.51 -13.38 8.01 -34.44 -0.28 -13.65 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 19 N -0.88 -23.90 9.35 55.43 0.52 -23.38 16 20 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.14 1.55 3.26 -66.95 -0.22 1.33 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 C 0.06 0.64 5.36 37.16 0.20 0.84 16 27 O -0.54 -7.06 10.17 -59.66 -0.61 -7.67 16 28 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 29 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.06 0.34 6.72 -51.93 -0.35 -0.01 16 31 H 0.08 0.58 8.02 -51.93 -0.42 0.17 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.38 6.14 -51.93 -0.32 1.06 16 35 H 0.41 7.98 5.63 -40.82 -0.23 7.75 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 39 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 44 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.05 0.41 6.37 -51.93 -0.33 0.08 16 46 H 0.04 0.44 7.80 -51.93 -0.41 0.03 16 47 H 0.37 3.31 9.12 45.56 0.42 3.72 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -30.63 360.80 -7.62 -38.26 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.72 Total: 8.73 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.25 Total: 4.92 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.29 Total: -45.69 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.79 Total: -27.43 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.63 -7.62 -38.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422480098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.820 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds