Wall clock time and date at job start Tue Mar 31 2020 04:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.78505 * 2 1 4 4 C 1.55163 * 110.71700 * 236.75776 * 2 1 3 5 5 C 1.55128 * 101.48381 * 205.97278 * 4 2 1 6 6 N 1.47424 * 104.72536 * 37.29739 * 5 4 2 7 7 C 1.34777 * 125.65360 * 155.81281 * 6 5 4 8 8 O 1.21346 * 120.00283 * 179.69185 * 7 6 5 9 9 C 1.49452 * 119.99678 * 359.69634 * 7 6 5 10 10 O 1.21353 * 119.99675 * 359.97438 * 9 7 6 11 11 N 1.34769 * 120.00165 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00237 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46998 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 299.99786 * 13 12 11 15 15 C 1.52992 * 109.47223 * 60.00291 * 13 12 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99962 * 0.02562 * 16 13 12 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99500 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00390 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46921 * 60.00425 * 20 18 16 22 22 H 1.48496 * 109.46933 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46946 * 300.00108 * 20 18 16 24 24 C 1.47030 * 108.70105 * 335.55137 * 6 5 4 25 25 H 1.08993 * 109.88350 * 241.86910 * 24 6 5 26 26 C 1.53000 * 109.88179 * 120.85761 * 24 6 5 27 27 O 1.42899 * 109.47403 * 66.45408 * 26 24 6 28 28 H 1.09000 * 109.46643 * 296.76745 * 1 2 3 29 29 H 1.09009 * 109.46544 * 56.75769 * 1 2 3 30 30 H 1.08991 * 109.47238 * 176.76125 * 1 2 3 31 31 H 1.08996 * 111.00384 * 324.21178 * 4 2 1 32 32 H 1.08998 * 111.00104 * 88.02533 * 4 2 1 33 33 H 1.08998 * 110.50059 * 278.45584 * 5 4 2 34 34 H 1.09003 * 110.34355 * 156.05990 * 5 4 2 35 35 H 0.97003 * 120.00232 * 0.02562 * 11 9 7 36 36 H 1.08993 * 109.47452 * 60.00368 * 12 11 9 37 37 H 1.09000 * 109.47175 * 300.00158 * 12 11 9 38 38 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 40 40 H 1.09004 * 109.47261 * 300.00303 * 14 13 12 41 41 H 1.09001 * 109.47066 * 299.99881 * 15 13 12 42 42 H 1.08996 * 109.47747 * 59.99547 * 15 13 12 43 43 H 1.09002 * 109.47103 * 179.97438 * 15 13 12 44 44 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.47118 * 186.45318 * 26 24 6 46 46 H 1.09000 * 109.47045 * 306.45537 * 26 24 6 47 47 H 0.96695 * 114.00681 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0789 -0.7956 -1.2138 5 6 3.4665 -1.2457 -0.6861 6 7 3.2445 -1.5509 0.7390 7 6 3.9921 -2.3838 1.4898 8 8 3.7191 -2.5563 2.6595 9 6 5.1575 -3.0949 0.8817 10 8 5.4303 -2.9226 -0.2881 11 7 5.9055 -3.9274 1.6325 12 6 7.0476 -4.6249 1.0363 13 6 7.7200 -5.5006 2.0956 14 6 8.2052 -4.6221 3.2505 15 6 6.7145 -6.5263 2.6225 16 6 8.8944 -6.2185 1.4821 17 1 9.1372 -6.0652 0.4410 18 6 9.6596 -7.0703 2.2502 19 7 9.3642 -7.2566 3.5181 20 14 11.1149 -7.9608 1.4896 21 1 12.0909 -6.9660 0.9767 22 1 11.7675 -8.8106 2.5177 23 1 10.6428 -8.8140 0.3697 24 6 2.0760 -0.7912 1.2073 25 1 2.3741 -0.1025 1.9977 26 6 1.0064 -1.7519 1.7306 27 8 1.4868 -2.4044 2.9077 28 1 -0.3632 0.4628 0.9176 29 1 -0.3633 0.5634 -0.8596 30 1 -0.3633 -1.0259 -0.0581 31 1 1.4451 -1.6536 -1.4374 32 1 2.1843 -0.1521 -2.0873 33 1 4.1947 -0.4417 -0.7928 34 1 3.8030 -2.1364 -1.2168 35 1 5.6873 -4.0654 2.5676 36 1 7.7637 -3.8942 0.6606 37 1 6.7019 -5.2510 0.2138 38 1 8.6846 -5.2459 4.0049 39 1 7.3554 -4.1032 3.6941 40 1 8.9216 -3.8913 2.8750 41 1 5.8648 -6.0074 3.0661 42 1 6.3688 -7.1521 1.7998 43 1 7.1937 -7.1504 3.3768 44 1 9.9027 -7.8555 4.0586 45 1 0.1013 -1.1932 1.9688 46 1 0.7829 -2.4975 0.9675 47 1 0.8590 -3.0294 3.2951 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422480098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:59 Heat of formation + Delta-G solvation = -134.624952 kcal Electronic energy + Delta-G solvation = -27375.034451 eV Core-core repulsion = 23557.309654 eV Total energy + Delta-G solvation = -3817.724797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90571 -40.37720 -38.76359 -38.20431 -37.09223 -35.16625 -33.99309 -32.73687 -31.30672 -28.80462 -27.65620 -27.61047 -27.11496 -25.66099 -24.78038 -23.16629 -21.24889 -20.67362 -20.05707 -19.07522 -18.29088 -17.93456 -17.67106 -17.37551 -16.67487 -16.58325 -16.35541 -15.89236 -15.25278 -15.21772 -14.78698 -14.70785 -14.42395 -14.19385 -14.07022 -13.89408 -13.88287 -13.43292 -13.22214 -13.12815 -12.95915 -12.69143 -12.63271 -12.54085 -12.37410 -12.28861 -12.12349 -11.94781 -11.61076 -11.52544 -11.37575 -11.28274 -10.77736 -10.75859 -10.41563 -10.40193 -10.13436 -9.71633 -8.02035 -6.19107 0.46355 1.32245 1.45847 1.46696 1.53632 2.23366 2.43939 2.60097 3.21584 3.23470 3.39040 3.58461 3.70945 3.94022 4.21728 4.28936 4.33578 4.41250 4.43838 4.45385 4.56340 4.65716 4.66264 4.80529 4.85934 4.90755 4.94698 5.01932 5.04870 5.08633 5.14491 5.15026 5.19090 5.26562 5.34968 5.43885 5.47724 5.62665 5.66050 6.08767 6.11110 6.17452 6.35769 6.39917 6.77180 6.86011 6.97355 7.05486 7.48908 8.97253 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.002944 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.650221 B = 9509.698147 C =10100.672754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.104 0.896 4 C -0.120 4.120 5 C 0.089 3.911 6 N -0.590 5.590 7 C 0.510 3.490 8 O -0.502 6.502 9 C 0.497 3.503 10 O -0.546 6.546 11 N -0.683 5.683 12 C 0.145 3.855 13 C 0.052 3.948 14 C -0.124 4.124 15 C -0.123 4.123 16 C -0.529 4.529 17 H 0.052 0.948 18 C 0.026 3.974 19 N -0.902 5.902 20 Si 0.950 3.050 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.130 3.870 25 H 0.068 0.932 26 C 0.062 3.938 27 O -0.570 6.570 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.027 0.973 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.260 0.740 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.229 14.690 -6.949 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.122 0.878 4 C -0.158 4.158 5 C -0.033 4.033 6 N -0.326 5.326 7 C 0.292 3.708 8 O -0.376 6.376 9 C 0.278 3.722 10 O -0.425 6.425 11 N -0.335 5.335 12 C 0.022 3.978 13 C 0.052 3.948 14 C -0.181 4.181 15 C -0.180 4.180 16 C -0.567 4.567 17 H 0.070 0.930 18 C -0.174 4.174 19 N -0.540 5.540 20 Si 0.776 3.224 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.200 1.200 24 C 0.027 3.973 25 H 0.086 0.914 26 C -0.017 4.017 27 O -0.376 6.376 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.249 0.751 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -19.523 14.908 -7.038 25.552 hybrid contribution 0.694 -1.194 0.390 1.435 sum -18.829 13.713 -6.647 24.223 Atomic orbital electron populations 1.21879 0.91835 1.02876 1.03467 1.22248 0.97819 0.99140 0.91298 0.87790 1.23004 0.93632 1.00843 0.98323 1.22817 0.99142 1.01983 0.79379 1.48370 1.28935 1.42708 1.12563 1.19736 0.83677 0.81029 0.86349 1.90825 1.68721 1.62294 1.15797 1.20437 0.84319 0.80914 0.86555 1.90644 1.70940 1.64447 1.16516 1.46061 1.29388 1.42945 1.15069 1.21524 0.85398 0.94166 0.96664 1.18356 0.93168 0.91706 0.91616 1.21707 0.98376 0.97958 1.00098 1.21695 0.96533 0.99533 1.00288 1.21221 1.12656 1.26268 0.96553 0.92999 1.25517 0.99553 0.97035 0.95245 1.69925 1.39983 1.37285 1.06838 0.85743 0.79927 0.78591 0.78108 1.20060 1.21036 1.20025 1.21999 0.84747 0.92553 0.97967 0.91377 1.22805 0.96250 0.95061 0.87564 1.86931 1.46310 1.61295 1.43017 0.91360 0.90178 0.92003 0.90128 0.86977 0.90947 0.90031 0.75132 0.92907 0.92859 0.91685 0.95427 0.95813 0.95406 0.95783 0.91708 0.93002 0.89699 0.93772 0.77231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 7.94 71.98 0.57 -0.41 16 2 C -0.09 -0.98 3.47 -9.60 -0.03 -1.02 16 3 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.12 -1.50 6.54 32.07 0.21 -1.29 16 5 C 0.09 1.93 6.08 86.93 0.53 2.46 16 6 N -0.59 -15.79 3.08 -789.17 -2.43 -18.22 16 7 C 0.51 17.53 7.66 87.27 0.67 18.20 16 8 O -0.50 -19.18 13.57 20.13 0.27 -18.91 16 9 C 0.50 18.67 7.86 87.27 0.69 19.35 16 10 O -0.55 -21.49 13.77 -3.26 -0.04 -21.54 16 11 N -0.68 -26.78 4.95 -464.41 -2.30 -29.08 16 12 C 0.15 6.31 4.50 86.38 0.39 6.70 16 13 C 0.05 2.50 0.50 -52.93 -0.03 2.47 16 14 C -0.12 -5.85 8.08 71.98 0.58 -5.27 16 15 C -0.12 -5.78 8.08 71.98 0.58 -5.20 16 16 C -0.53 -28.09 8.01 25.60 0.21 -27.88 16 17 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 18 C 0.03 1.40 5.15 84.65 0.44 1.83 16 19 N -0.90 -49.20 9.35 21.45 0.20 -49.00 16 20 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.13 2.62 3.26 45.34 0.15 2.77 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 26 C 0.06 1.14 5.36 71.98 0.39 1.53 16 27 O -0.57 -14.58 10.17 -125.62 -1.28 -15.86 16 28 H 0.07 0.41 7.56 -2.39 -0.02 0.39 16 29 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.06 0.45 6.72 -2.39 -0.02 0.43 16 31 H 0.08 0.99 8.02 -2.39 -0.02 0.97 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 2.16 6.14 -2.39 -0.01 2.14 16 35 H 0.41 16.00 5.63 -92.71 -0.52 15.47 16 36 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 39 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 40 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 42 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 44 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 45 H 0.09 1.05 6.37 -2.39 -0.02 1.03 16 46 H 0.04 0.81 7.80 -2.39 -0.02 0.79 16 47 H 0.38 6.63 9.12 -74.06 -0.68 5.96 16 Total: -1.00 -66.18 360.80 1.57 -64.61 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.21 Total: 28.99 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 5.33 Total: 14.24 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -4.53 Total: -96.29 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -1.05 Total: -56.31 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -66.18 1.57 -64.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422480098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.017 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds