Wall clock time and date at job start Tue Mar 31 2020 04:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00128 * 2 1 4 4 O 1.42895 * 109.47405 * 134.72459 * 3 2 1 5 5 C 1.42896 * 114.00054 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46972 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47094 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47199 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00186 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00057 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99615 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46257 * 325.02137 * 11 10 8 13 13 C 1.53043 * 109.46134 * 84.99897 * 11 10 8 14 14 C 1.53186 * 109.31283 * 181.38182 * 13 11 10 15 15 N 1.46929 * 108.77706 * 305.36276 * 14 13 11 16 16 C 1.36939 * 120.63367 * 233.58748 * 15 14 13 17 17 H 1.07994 * 119.99726 * 151.83196 * 16 15 14 18 18 C 1.38813 * 119.99888 * 331.83348 * 16 15 14 19 19 N 1.31614 * 119.99991 * 343.07819 * 18 16 15 20 20 Si 1.86798 * 119.99813 * 163.07408 * 18 16 15 21 21 H 1.48502 * 109.47372 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47159 * 120.00275 * 20 18 16 23 23 H 1.48503 * 109.46882 * 240.00201 * 20 18 16 24 24 C 1.46922 * 118.73591 * 53.60812 * 15 14 13 25 25 C 1.53041 * 109.45606 * 205.06230 * 11 10 8 26 26 H 1.08996 * 109.50337 * 298.57013 * 25 11 10 27 27 O 1.42901 * 109.49586 * 58.66832 * 25 11 10 28 28 H 1.08005 * 120.00289 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00370 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00183 * 179.72368 * 2 1 3 31 31 H 1.08995 * 109.47290 * 254.72858 * 3 2 1 32 32 H 1.09008 * 109.46765 * 14.72366 * 3 2 1 33 33 H 1.09003 * 109.46862 * 299.99316 * 5 4 3 34 34 H 1.08995 * 109.47670 * 60.00199 * 5 4 3 35 35 H 1.08999 * 109.47195 * 299.99716 * 6 5 4 36 36 H 1.09002 * 109.47353 * 59.99697 * 6 5 4 37 37 H 1.08999 * 109.47238 * 300.00143 * 7 6 5 38 38 H 1.09002 * 109.46898 * 59.99872 * 7 6 5 39 39 H 0.96997 * 120.00053 * 359.97438 * 10 8 7 40 40 H 1.08996 * 109.49897 * 301.33386 * 13 11 10 41 41 H 1.09003 * 109.49782 * 61.42891 * 13 11 10 42 42 H 1.09001 * 109.58815 * 65.14936 * 14 13 11 43 43 H 1.09001 * 109.58631 * 185.58195 * 14 13 11 44 44 H 0.97003 * 119.99921 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.58947 * 66.17876 * 24 15 14 46 46 H 1.09001 * 109.59011 * 186.46412 * 24 15 14 47 47 H 0.96697 * 114.00068 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1227 1.2436 0.9572 5 6 3.9033 2.4378 1.0377 6 6 5.0011 2.2595 2.0885 7 6 5.8374 3.5379 2.1743 8 6 6.9183 3.3626 3.2096 9 8 7.0110 2.3179 3.8186 10 7 7.7820 4.3668 3.4589 11 6 8.8331 4.1960 4.4650 12 1 8.4566 3.5818 5.2829 13 6 10.0430 3.5097 3.8269 14 6 11.1264 3.3017 4.8898 15 7 11.4280 4.5956 5.5172 16 6 12.7149 5.0602 5.5745 17 1 12.9048 6.1230 5.5969 18 6 13.7754 4.1648 5.6037 19 7 13.5626 2.9026 5.9097 20 14 15.5043 4.7516 5.2088 21 1 15.4757 6.2038 4.8997 22 1 16.3875 4.5122 6.3783 23 1 16.0241 4.0053 4.0349 24 6 10.3227 5.3814 6.0823 25 6 9.2483 5.5661 5.0060 26 1 9.6480 6.1724 4.1932 27 8 8.1113 6.2190 5.5743 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9352 0.0045 31 1 2.4796 1.4844 -0.9913 32 1 1.3843 2.1168 0.2612 33 1 4.3577 2.6409 0.0679 34 1 3.2623 3.2726 1.3207 35 1 4.5465 2.0566 3.0581 36 1 5.6424 1.4246 1.8060 37 1 6.2921 3.7405 1.2046 38 1 5.1964 4.3731 2.4566 39 1 7.7081 5.2022 2.9716 40 1 9.7415 2.5441 3.4211 41 1 10.4353 4.1353 3.0252 42 1 10.7671 2.6039 5.6462 43 1 12.0266 2.9043 4.4211 44 1 14.3035 2.2768 5.9298 45 1 9.8978 4.8532 6.9358 46 1 10.6930 6.3552 6.4027 47 1 8.3013 7.0949 5.9372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099763371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:33 Heat of formation + Delta-G solvation = -101.322236 kcal Electronic energy + Delta-G solvation = -25762.084515 eV Core-core repulsion = 21945.803833 eV Total energy + Delta-G solvation = -3816.280683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.80861 -38.50940 -37.92389 -35.41580 -34.72858 -34.25353 -33.22781 -31.91388 -30.06835 -28.67830 -27.56567 -25.83530 -24.86374 -22.61075 -22.19684 -21.51054 -20.28605 -20.06372 -19.40730 -17.42826 -17.02974 -16.74174 -16.56452 -16.50614 -15.83175 -15.59016 -15.21754 -14.82461 -14.25889 -14.04714 -13.90328 -13.56638 -13.50251 -13.15823 -12.95076 -12.74078 -12.45302 -12.24672 -12.17782 -11.92584 -11.57687 -11.45162 -11.23249 -11.11837 -11.06626 -10.90145 -10.66898 -10.32235 -10.25748 -10.17137 -9.96437 -9.79609 -9.71025 -9.67385 -9.38353 -8.72969 -8.45587 -6.77598 -5.85817 -3.30532 1.76009 2.88139 3.21359 3.33230 3.40846 3.42840 3.65727 4.36059 4.50447 4.55063 4.70606 4.73341 4.77141 4.97267 4.98158 5.09980 5.17809 5.20095 5.27204 5.30636 5.34184 5.45696 5.47112 5.49828 5.56250 5.77401 5.95968 5.97853 6.12216 6.13865 6.16521 6.25479 6.33544 6.47912 6.53858 6.66867 6.77014 6.89344 6.91879 7.28748 7.60254 7.72257 7.77695 7.90856 8.36890 8.49572 9.12251 9.74584 10.30728 11.22726 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.002110 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.519307 B =13267.505019 C =13861.395240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.383 6.383 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.137 4.137 8 C 0.510 3.490 9 O -0.540 6.540 10 N -0.718 5.718 11 C 0.162 3.838 12 H 0.087 0.913 13 C -0.146 4.146 14 C 0.171 3.829 15 N -0.588 5.588 16 C -0.260 4.260 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.120 3.880 25 C 0.080 3.920 26 H 0.056 0.944 27 O -0.571 6.571 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.395 0.605 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.024 0.976 43 H 0.093 0.907 44 H 0.255 0.745 45 H 0.029 0.971 46 H 0.060 0.940 47 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.804 2.996 -12.229 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.014 4.014 6 C -0.141 4.141 7 C -0.177 4.177 8 C 0.296 3.704 9 O -0.418 6.418 10 N -0.367 5.367 11 C 0.058 3.942 12 H 0.105 0.895 13 C -0.186 4.186 14 C 0.045 3.955 15 N -0.312 5.312 16 C -0.389 4.389 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.542 5.542 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.215 1.215 24 C -0.007 4.007 25 C 0.019 3.981 26 H 0.074 0.926 27 O -0.376 6.376 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.229 0.771 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.042 0.958 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.860 1.400 -11.828 24.021 hybrid contribution 1.144 1.428 -0.438 1.881 sum -19.716 2.828 -12.266 23.392 Atomic orbital electron populations 1.23840 0.95562 1.02274 1.00236 1.22775 0.95669 0.98333 1.00076 1.21533 0.89079 0.95818 0.92441 1.87932 1.44854 1.37408 1.60070 1.22540 0.92871 0.87026 0.98916 1.21211 0.95812 0.97493 0.99620 1.21535 0.96941 0.99888 0.99345 1.20472 0.82281 0.83874 0.83763 1.90724 1.73022 1.27273 1.50734 1.46102 1.32160 1.16968 1.41510 1.20989 0.87273 0.95467 0.90456 0.89502 1.22594 0.95866 0.99588 1.00589 1.20834 0.95853 0.86930 0.91925 1.44045 1.02334 1.19802 1.65012 1.19198 0.81748 0.91646 1.46318 0.91509 1.25088 0.98203 0.96145 0.99982 1.70043 1.30916 1.03217 1.50027 0.86208 0.84485 0.78166 0.77782 1.20228 1.21630 1.21458 1.21528 0.89095 0.96735 0.93370 1.22770 0.86423 0.92419 0.96454 0.92647 1.86480 1.35575 1.35087 1.80419 0.88460 0.87770 0.86491 0.92370 0.92849 0.93220 0.93270 0.90229 0.90181 0.88953 0.88946 0.77132 0.91941 0.92411 0.95789 0.88908 0.93461 0.95354 0.92190 0.78035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 14.31 29.02 0.42 -0.73 16 2 C -0.15 -1.16 9.89 -36.02 -0.36 -1.52 16 3 C 0.09 0.70 6.35 36.01 0.23 0.93 16 4 O -0.38 -4.18 10.33 -35.23 -0.36 -4.55 16 5 C 0.06 0.56 5.94 37.16 0.22 0.78 16 6 C -0.10 -1.14 4.87 -26.73 -0.13 -1.27 16 7 C -0.14 -1.36 5.70 -27.88 -0.16 -1.52 16 8 C 0.51 7.63 7.79 -10.99 -0.09 7.54 16 9 O -0.54 -10.53 15.64 5.56 0.09 -10.45 16 10 N -0.72 -10.41 4.92 -53.77 -0.26 -10.68 16 11 C 0.16 2.92 2.12 -67.89 -0.14 2.77 16 12 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 13 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 14 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 15 N -0.59 -14.37 2.99 -172.32 -0.52 -14.89 16 16 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 17 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 19 N -0.90 -25.87 11.20 55.49 0.62 -25.25 16 20 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 C 0.12 2.44 6.14 -3.71 -0.02 2.42 16 25 C 0.08 1.35 3.14 -26.61 -0.08 1.27 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 O -0.57 -8.41 13.16 -35.23 -0.46 -8.88 16 28 H 0.10 0.51 7.90 -52.48 -0.41 0.10 16 29 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.36 7.86 -51.92 -0.41 -0.04 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 4.58 8.60 -40.82 -0.35 4.23 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 47 H 0.37 3.91 9.08 45.56 0.41 4.32 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -33.18 385.80 -7.97 -41.16 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.34 Total: 6.80 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.52 Total: 4.72 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.16 Total: -50.82 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.74 Total: -23.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.18 -7.97 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099763371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.167 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds