Wall clock time and date at job start Tue Mar 31 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30187 * 1 3 3 Si 1.86797 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47304 * 240.00529 * 3 2 1 5 5 H 1.48506 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46968 * 120.00358 * 3 2 1 7 7 C 1.40943 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00307 * 179.97438 * 7 2 1 9 9 C 1.46609 * 119.99430 * 359.97438 * 7 2 1 10 10 O 1.21816 * 120.00367 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99441 * 179.97438 * 9 7 2 12 12 N 1.28996 * 119.99775 * 180.02562 * 11 9 7 13 13 C 1.31652 * 120.00241 * 180.02562 * 12 11 9 14 14 C 1.41708 * 120.00469 * 179.97438 * 13 12 11 15 15 C 1.40557 * 120.27821 * 180.02562 * 14 13 12 16 16 C 1.36505 * 119.95104 * 179.97438 * 15 14 13 17 17 Cl 1.73607 * 119.73458 * 179.72174 * 16 15 14 18 18 C 1.39119 * 120.52826 * 359.97438 * 16 15 14 19 19 C 1.38119 * 120.55696 * 0.02562 * 18 16 15 20 20 N 1.48023 * 119.98283 * 179.97438 * 19 18 16 21 21 O 1.31693 * 119.99903 * 0.02562 * 20 19 18 22 22 O 1.31703 * 119.99966 * 180.02562 * 20 19 18 23 23 C 1.38638 * 120.03558 * 359.97438 * 19 18 16 24 24 O 1.35510 * 120.26639 * 179.97438 * 23 19 18 25 25 H 0.96993 * 120.00047 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00121 * 0.02562 * 11 9 7 27 27 H 1.08007 * 120.00104 * 359.97438 * 13 12 11 28 28 H 1.07995 * 120.02684 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.72370 * 179.97438 * 18 16 15 30 30 H 0.96694 * 114.00385 * 270.02450 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3019 0.0000 0.0000 3 14 2.2358 1.6177 0.0000 4 1 3.0895 1.6965 -1.2126 5 1 1.2708 2.7465 0.0006 6 1 3.0896 1.6964 1.2125 7 6 2.0067 -1.2206 -0.0005 8 1 3.0867 -1.2205 -0.0010 9 6 1.2736 -2.4902 -0.0005 10 8 0.0554 -2.4903 -0.0005 11 7 1.9476 -3.6573 -0.0016 12 7 1.3026 -4.7745 -0.0021 13 6 1.9609 -5.9146 -0.0026 14 6 1.2524 -7.1419 -0.0026 15 6 1.9494 -8.3625 -0.0026 16 6 1.2602 -9.5408 -0.0021 17 17 2.1267 -11.0452 -0.0094 18 6 -0.1310 -9.5458 -0.0010 19 6 -0.8374 -8.3590 -0.0010 20 7 -2.3175 -8.3791 -0.0004 21 8 -2.9604 -9.5285 0.0006 22 8 -2.9915 -7.2476 -0.0009 23 6 -0.1610 -7.1488 -0.0015 24 8 -0.8494 -5.9816 -0.0020 25 1 -0.4850 0.8400 0.0004 26 1 2.9175 -3.6573 -0.0020 27 1 3.0409 -5.9147 -0.0030 28 1 3.0293 -8.3682 -0.0030 29 1 -0.6631 -10.4857 -0.0010 30 1 -1.0496 -5.6433 -0.8855 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000509309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:26 Heat of formation + Delta-G solvation = 15.148350 kcal Electronic energy + Delta-G solvation = -22493.534514 eV Core-core repulsion = 18514.255251 eV Total energy + Delta-G solvation = -3979.279263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 313.034 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72338 -39.20149 -38.33238 -37.47290 -36.34220 -35.90265 -34.22046 -33.20337 -32.79141 -31.00931 -29.38984 -26.83731 -26.61305 -24.43264 -22.55253 -21.42955 -20.35538 -18.95186 -18.41354 -18.11603 -17.61342 -16.97566 -16.29896 -15.93984 -15.78496 -15.52699 -14.97723 -14.58180 -14.27567 -13.94234 -13.67172 -13.05058 -12.95680 -12.86232 -12.00452 -11.66079 -11.53115 -11.51620 -11.30018 -11.24377 -11.15705 -10.98947 -10.69112 -10.59166 -10.55180 -10.00416 -9.76707 -9.26385 -9.14611 -8.20763 -7.47527 -6.65703 -5.13999 -0.70560 0.34435 0.87536 1.03317 1.66719 2.25550 2.93535 2.98026 3.01713 3.22048 3.54961 3.71842 3.93582 4.21390 4.34391 4.39476 4.47132 4.68751 5.08687 5.27682 5.30993 5.33689 5.48371 5.56917 5.89236 6.02938 6.20361 6.81884 6.99096 7.20942 7.66713 7.71925 8.39749 8.51209 8.83282 10.08280 10.25679 Molecular weight = 313.03amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.003204 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.906516 B = 8737.803761 C =10113.260506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.085 3.915 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.532 3.468 10 O -0.520 6.520 11 N -0.504 5.504 12 N -0.121 5.121 13 C -0.087 4.087 14 C 0.003 3.997 15 C -0.055 4.055 16 C -0.039 4.039 17 Cl -0.047 7.047 18 C -0.059 4.059 19 C -0.018 4.018 20 N -0.016 5.016 21 O -0.193 6.193 22 O -0.131 6.131 23 C 0.192 3.808 24 O -0.434 6.434 25 H 0.280 0.720 26 H 0.369 0.631 27 H 0.118 0.882 28 H 0.156 0.844 29 H 0.162 0.838 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 -15.034 -1.753 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.096 0.904 9 C 0.340 3.660 10 O -0.395 6.395 11 N -0.250 5.250 12 N 0.051 4.949 13 C -0.282 4.282 14 C -0.001 4.001 15 C -0.077 4.077 16 C -0.067 4.067 17 Cl -0.018 7.018 18 C -0.081 4.081 19 C -0.106 4.106 20 N 0.464 4.536 21 O -0.380 6.380 22 O -0.332 6.332 23 C 0.139 3.861 24 O -0.246 6.246 25 H 0.092 0.908 26 H 0.206 0.794 27 H 0.135 0.865 28 H 0.173 0.827 29 H 0.179 0.821 30 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 6.608 -14.458 -1.172 15.940 hybrid contribution 1.436 0.355 -0.402 1.533 sum 8.045 -14.103 -1.574 16.312 Atomic orbital electron populations 1.69726 1.07530 1.28986 1.30909 1.25876 0.94787 1.00752 0.92470 0.86197 0.79790 0.79772 0.79834 1.18859 1.20044 1.18856 1.21010 0.93863 0.87878 1.53924 0.90382 1.18898 0.87941 0.80255 0.78922 1.90740 1.13144 1.84649 1.51002 1.45925 1.08938 1.03880 1.66221 1.71759 1.30993 0.93417 0.98699 1.22205 0.96548 0.89363 1.20087 1.17832 0.90162 0.92889 0.99231 1.21159 1.01451 0.88950 0.96173 1.20020 0.90922 0.88395 1.07326 1.98401 1.75695 1.30725 1.97012 1.20755 0.92482 0.97788 0.97050 1.20659 0.77445 0.95832 1.16679 1.50226 1.03934 1.02913 0.96550 1.96249 1.70980 1.14021 1.56769 1.96362 1.68392 1.15497 1.52980 1.18738 0.89526 0.84938 0.92882 1.84824 1.73231 1.32972 1.33581 0.90837 0.79377 0.86475 0.82673 0.82094 0.72915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.24 11.84 55.60 0.66 -19.58 16 2 C 0.09 2.12 5.52 -17.22 -0.10 2.03 16 3 Si 0.92 17.85 29.57 -169.99 -5.03 12.83 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 7 C -0.53 -13.18 9.59 -35.18 -0.34 -13.52 16 8 H 0.08 1.70 7.86 -52.49 -0.41 1.29 16 9 C 0.53 13.69 7.84 -12.88 -0.10 13.58 16 10 O -0.52 -15.62 15.36 5.08 0.08 -15.54 16 11 N -0.50 -10.17 5.88 30.26 0.18 -9.99 16 12 N -0.12 -2.31 8.30 31.15 0.26 -2.05 16 13 C -0.09 -1.23 10.41 -16.30 -0.17 -1.40 16 14 C 0.00 0.04 5.77 -106.52 -0.61 -0.58 16 15 C -0.05 -0.52 9.48 -39.33 -0.37 -0.90 16 16 C -0.04 -0.38 6.28 -39.88 -0.25 -0.63 16 17 Cl -0.05 -0.39 28.93 -51.86 -1.50 -1.89 16 18 C -0.06 -0.66 9.36 -39.30 -0.37 -1.03 16 19 C -0.02 -0.26 6.89 -79.84 -0.55 -0.81 16 20 N -0.02 -0.27 4.98 34.01 0.17 -0.10 16 21 O -0.19 -3.22 19.14 -31.56 -0.60 -3.82 16 22 O -0.13 -2.43 17.90 -39.21 -0.70 -3.14 16 23 C 0.19 2.86 6.73 -38.25 -0.26 2.60 16 24 O -0.43 -7.69 9.21 -40.33 -0.37 -8.06 16 25 H 0.28 6.87 8.28 -40.82 -0.34 6.53 16 26 H 0.37 5.99 8.43 -190.12 -1.60 4.39 16 27 H 0.12 1.28 7.95 -52.48 -0.42 0.86 16 28 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.16 1.61 7.56 -52.48 -0.40 1.21 16 30 H 0.41 6.39 9.06 45.56 0.41 6.81 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -32.37 307.50 -7.32 -39.69 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -1.97 Total: 7.69 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.12 Total: -0.66 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 1.26 Total: -31.72 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.60 Total: -30.56 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.37 -7.32 -39.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000509309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.834 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds