Wall clock time and date at job start Tue Mar 31 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30187 * 1 3 3 Si 1.86797 * 119.99840 * 2 1 4 4 H 1.48500 * 109.47304 * 240.00529 * 3 2 1 5 5 H 1.48506 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46968 * 120.00358 * 3 2 1 7 7 C 1.40943 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00307 * 179.97438 * 7 2 1 9 9 C 1.46609 * 119.99430 * 359.97438 * 7 2 1 10 10 O 1.21816 * 120.00367 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99441 * 179.97438 * 9 7 2 12 12 N 1.28996 * 119.99775 * 180.02562 * 11 9 7 13 13 C 1.31652 * 120.00241 * 180.02562 * 12 11 9 14 14 C 1.41708 * 120.00469 * 179.97438 * 13 12 11 15 15 C 1.40557 * 120.27821 * 180.02562 * 14 13 12 16 16 C 1.36505 * 119.95104 * 179.97438 * 15 14 13 17 17 Cl 1.73607 * 119.73458 * 179.72174 * 16 15 14 18 18 C 1.39119 * 120.52826 * 359.97438 * 16 15 14 19 19 C 1.38119 * 120.55696 * 0.02562 * 18 16 15 20 20 N 1.48023 * 119.98283 * 179.97438 * 19 18 16 21 21 O 1.31693 * 119.99903 * 0.02562 * 20 19 18 22 22 O 1.31703 * 119.99966 * 180.02562 * 20 19 18 23 23 C 1.38638 * 120.03558 * 359.97438 * 19 18 16 24 24 O 1.35510 * 120.26639 * 179.97438 * 23 19 18 25 25 H 0.96993 * 120.00047 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00121 * 0.02562 * 11 9 7 27 27 H 1.08007 * 120.00104 * 359.97438 * 13 12 11 28 28 H 1.07995 * 120.02684 * 359.97438 * 15 14 13 29 29 H 1.08003 * 119.72370 * 179.97438 * 18 16 15 30 30 H 0.96694 * 114.00385 * 270.02450 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3019 0.0000 0.0000 3 14 2.2358 1.6177 0.0000 4 1 3.0895 1.6965 -1.2126 5 1 1.2708 2.7465 0.0006 6 1 3.0896 1.6964 1.2125 7 6 2.0067 -1.2206 -0.0005 8 1 3.0867 -1.2205 -0.0010 9 6 1.2736 -2.4902 -0.0005 10 8 0.0554 -2.4903 -0.0005 11 7 1.9476 -3.6573 -0.0016 12 7 1.3026 -4.7745 -0.0021 13 6 1.9609 -5.9146 -0.0026 14 6 1.2524 -7.1419 -0.0026 15 6 1.9494 -8.3625 -0.0026 16 6 1.2602 -9.5408 -0.0021 17 17 2.1267 -11.0452 -0.0094 18 6 -0.1310 -9.5458 -0.0010 19 6 -0.8374 -8.3590 -0.0010 20 7 -2.3175 -8.3791 -0.0004 21 8 -2.9604 -9.5285 0.0006 22 8 -2.9915 -7.2476 -0.0009 23 6 -0.1610 -7.1488 -0.0015 24 8 -0.8494 -5.9816 -0.0020 25 1 -0.4850 0.8400 0.0004 26 1 2.9175 -3.6573 -0.0020 27 1 3.0409 -5.9147 -0.0030 28 1 3.0293 -8.3682 -0.0030 29 1 -0.6631 -10.4857 -0.0010 30 1 -1.0496 -5.6433 -0.8855 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000509309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:26 Heat of formation + Delta-G solvation = -8.860500 kcal Electronic energy + Delta-G solvation = -22494.575616 eV Core-core repulsion = 18514.255251 eV Total energy + Delta-G solvation = -3980.320365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 313.034 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85727 -40.66561 -39.60157 -38.51544 -37.64972 -37.26067 -35.53476 -34.86468 -34.25778 -32.20755 -30.73033 -28.47173 -27.87445 -25.73746 -23.66564 -22.72520 -21.92592 -20.29142 -19.68635 -19.29283 -19.08066 -18.28150 -17.66997 -17.41279 -16.97160 -16.68671 -16.21503 -16.08526 -15.75196 -15.18861 -14.74525 -14.64760 -13.96727 -13.90416 -13.51432 -13.33752 -12.84309 -12.76964 -12.62391 -12.60416 -12.50160 -12.21353 -12.10743 -11.94312 -11.92664 -11.20821 -10.99814 -10.95666 -10.19513 -10.15045 -8.88293 -8.47665 -7.05373 -1.95648 -0.73871 -0.22079 -0.11678 0.79269 1.09740 1.40398 1.45522 1.56631 2.08243 2.10027 2.43007 2.47255 2.62264 3.23946 3.41473 3.47332 3.52766 3.60273 3.98430 4.23023 4.26033 4.47078 4.57509 4.76163 4.94596 5.06912 5.17745 5.47276 5.55035 5.96821 6.43487 6.65189 6.77595 7.42324 8.35954 8.48974 Molecular weight = 313.03amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.003204 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.906516 B = 8737.803761 C =10113.260506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.030 3.970 3 Si 1.006 2.994 4 H -0.249 1.249 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.557 4.557 8 H 0.105 0.895 9 C 0.527 3.473 10 O -0.584 6.584 11 N -0.518 5.518 12 N -0.200 5.200 13 C -0.026 4.026 14 C -0.027 4.027 15 C -0.004 4.004 16 C -0.038 4.038 17 Cl -0.018 7.018 18 C -0.030 4.030 19 C -0.039 4.039 20 N -0.010 5.010 21 O -0.167 6.167 22 O -0.211 6.211 23 C 0.181 3.819 24 O -0.461 6.461 25 H 0.283 0.717 26 H 0.386 0.614 27 H 0.163 0.837 28 H 0.202 0.798 29 H 0.180 0.820 30 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.778 -18.042 -1.765 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.188 4.188 3 Si 0.825 3.175 4 H -0.173 1.173 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.593 4.593 8 H 0.123 0.877 9 C 0.336 3.664 10 O -0.466 6.466 11 N -0.264 5.264 12 N -0.021 5.021 13 C -0.226 4.226 14 C -0.030 4.030 15 C -0.025 4.025 16 C -0.066 4.066 17 Cl 0.011 6.989 18 C -0.052 4.052 19 C -0.127 4.127 20 N 0.464 4.536 21 O -0.365 6.365 22 O -0.393 6.393 23 C 0.129 3.871 24 O -0.274 6.274 25 H 0.093 0.907 26 H 0.226 0.774 27 H 0.179 0.821 28 H 0.219 0.781 29 H 0.198 0.802 30 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 10.634 -17.344 -1.184 20.379 hybrid contribution 0.355 0.498 -0.404 0.733 sum 10.988 -16.846 -1.589 20.175 Atomic orbital electron populations 1.69917 1.10037 1.30201 1.33191 1.27191 0.95506 1.05185 0.90964 0.84930 0.78141 0.73822 0.80653 1.17282 1.20053 1.17500 1.21596 0.95267 0.88268 1.54185 0.87721 1.19136 0.87375 0.82218 0.77684 1.90679 1.15688 1.86312 1.53886 1.44821 1.09048 1.03131 1.69406 1.71788 1.32498 0.94050 1.03724 1.22928 0.98737 0.88382 1.12512 1.17955 0.89110 0.93897 1.02060 1.21621 1.03418 0.87051 0.90456 1.20080 0.90313 0.89771 1.06415 1.98435 1.74792 1.28870 1.96787 1.21114 0.93379 0.97182 0.93493 1.20852 0.75971 0.96819 1.19076 1.50530 1.05091 1.02433 0.95547 1.96198 1.71816 1.14016 1.54488 1.96397 1.69241 1.15707 1.57988 1.19147 0.90644 0.84316 0.93032 1.84797 1.74122 1.34539 1.33962 0.90669 0.77443 0.82053 0.78078 0.80228 0.72988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.52 11.84 21.99 0.26 -46.26 16 2 C 0.03 1.53 5.52 85.60 0.47 2.01 16 3 Si 1.01 37.01 29.57 68.60 2.03 39.04 16 4 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16 5 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 7 C -0.56 -28.60 9.59 25.12 0.24 -28.36 16 8 H 0.10 4.56 7.86 -2.91 -0.02 4.54 16 9 C 0.53 28.74 7.84 86.43 0.68 29.42 16 10 O -0.58 -37.99 15.36 -4.72 -0.07 -38.06 16 11 N -0.52 -21.58 5.88 -176.33 -1.04 -22.62 16 12 N -0.20 -7.76 8.30 -55.35 -0.46 -8.22 16 13 C -0.03 -0.67 10.41 85.58 0.89 0.22 16 14 C -0.03 -0.60 5.77 -21.09 -0.12 -0.72 16 15 C 0.00 -0.05 9.48 22.43 0.21 0.16 16 16 C -0.04 -0.53 6.28 22.08 0.14 -0.39 16 17 Cl -0.02 -0.20 28.93 -2.72 -0.08 -0.28 16 18 C -0.03 -0.57 9.36 22.45 0.21 -0.36 16 19 C -0.04 -1.06 6.89 36.44 0.25 -0.81 16 20 N -0.01 -0.33 4.98 -46.30 -0.23 -0.56 16 21 O -0.17 -5.38 19.14 3.53 0.07 -5.31 16 22 O -0.21 -8.55 17.90 10.82 0.19 -8.36 16 23 C 0.18 5.36 6.73 23.13 0.16 5.52 16 24 O -0.46 -17.76 9.21 -66.98 -0.62 -18.37 16 25 H 0.28 14.77 8.28 -92.71 -0.77 14.00 16 26 H 0.39 12.47 8.43 -219.72 -1.85 10.62 16 27 H 0.16 2.66 7.95 -2.91 -0.02 2.64 16 28 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.18 2.78 7.56 -2.91 -0.02 2.75 16 30 H 0.41 14.67 9.06 -74.06 -0.67 14.00 16 Total: -1.00 -79.68 307.50 1.92 -77.76 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.26 Total: 24.55 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 3.13 Total: 6.69 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -1.47 Total: -77.66 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: -0.43 Total: -70.10 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -79.68 1.92 -77.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000509309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.896 kcal (2) G-P(sol) polarization free energy of solvation -79.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds