Wall clock time and date at job start Tue Mar 31 2020 04:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99988 * 2 1 4 4 C 1.50693 * 109.46899 * 274.99746 * 3 2 1 5 5 H 1.08001 * 120.00481 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00050 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99912 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00429 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46864 * 90.00121 * 8 6 4 10 10 H 1.48498 * 109.47276 * 210.00180 * 8 6 4 11 11 H 1.48501 * 109.47059 * 330.00512 * 8 6 4 12 12 S 1.65597 * 120.00339 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40741 * 156.46124 * 12 2 1 14 14 O 1.42102 * 106.40179 * 23.54057 * 12 2 1 15 15 C 1.76199 * 107.22309 * 270.00394 * 12 2 1 16 16 C 1.35510 * 120.05207 * 114.97245 * 15 12 2 17 17 C 1.39490 * 121.58073 * 179.75369 * 16 15 12 18 18 C 1.35508 * 121.58505 * 0.56786 * 17 16 15 19 19 C 1.41763 * 119.89801 * 359.43859 * 18 17 16 20 20 N 1.32331 * 131.00774 * 180.27318 * 19 18 17 21 21 S 1.55542 * 109.42052 * 180.02562 * 20 19 18 22 22 N 1.55537 * 100.20494 * 0.02562 * 21 20 19 23 23 C 1.32334 * 109.42132 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46991 * 269.99943 * 1 2 3 25 25 H 1.08998 * 109.47012 * 30.00003 * 1 2 3 26 26 H 1.08995 * 109.46529 * 150.00444 * 1 2 3 27 27 H 1.09000 * 109.46708 * 34.99941 * 3 2 1 28 28 H 1.09005 * 109.46926 * 155.00034 * 3 2 1 29 29 H 0.97002 * 120.00110 * 180.02562 * 7 6 4 30 30 H 1.08001 * 119.20635 * 0.02562 * 16 15 12 31 31 H 1.08000 * 119.21394 * 180.31519 * 17 16 15 32 32 H 1.08002 * 120.05502 * 179.72124 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9290 1.1934 -2.2332 6 6 2.9997 2.9508 -1.6664 7 7 3.5025 3.6474 -0.6705 8 14 3.1789 3.5664 -3.4209 9 1 2.0180 4.4264 -3.7646 10 1 4.4318 4.3539 -3.5437 11 1 3.2290 2.4084 -4.3492 12 16 2.2930 -1.4341 0.0006 13 8 3.5759 -1.1570 -0.5439 14 8 1.4114 -2.4067 -0.5434 15 6 2.5538 -1.8852 1.6838 16 6 1.9700 -3.0003 2.1858 17 6 2.1587 -3.3899 3.5118 18 6 2.9254 -2.6652 4.3623 19 6 3.5672 -1.4866 3.9053 20 7 4.3559 -0.6286 4.5321 21 16 4.7835 0.4961 3.5464 22 7 4.0396 0.0336 2.2612 23 6 3.3727 -1.0807 2.5156 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1177 0.4343 29 1 3.9653 4.4814 -0.8471 30 1 1.3471 -3.6041 1.5426 31 1 1.6791 -4.2886 3.8705 32 1 3.0511 -2.9874 5.3854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001817154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:55 Heat of formation + Delta-G solvation = 18.827632 kcal Electronic energy + Delta-G solvation = -21990.884770 eV Core-core repulsion = 18592.394725 eV Total energy + Delta-G solvation = -3398.490046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.034 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86253 -36.85731 -36.27437 -35.44461 -35.11459 -33.88567 -32.36685 -30.50491 -27.68973 -27.61092 -25.02750 -22.67097 -22.59751 -22.15751 -19.65224 -18.28076 -17.54631 -17.12346 -16.48557 -16.32095 -15.78336 -15.64760 -15.27195 -14.96833 -14.36263 -13.42130 -13.27132 -12.91137 -12.49877 -12.37373 -12.15183 -12.04106 -11.91270 -11.66084 -11.53337 -11.44414 -11.23332 -11.08376 -11.03889 -10.79347 -10.62781 -10.29322 -10.22821 -9.96348 -9.63489 -8.82779 -8.75903 -8.35553 -7.98576 -5.99346 -4.01800 -0.31739 1.01606 1.30180 1.51071 1.54680 1.81915 3.19556 3.35026 3.41164 3.47503 3.71189 4.18413 4.28873 4.49544 4.63202 4.74521 4.90480 5.03895 5.25343 5.36271 5.45952 5.67908 5.75839 5.96402 6.02414 6.02837 6.10923 6.31590 6.61618 6.75401 7.34579 7.55209 7.73940 7.98144 8.29565 8.99708 9.61561 11.09353 Molecular weight = 313.03amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.006130 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.462896 B = 4566.475250 C = 5759.366938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.981 5.981 3 C 0.247 3.753 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.687 3.313 13 O -0.927 6.927 14 O -0.977 6.977 15 C -0.623 4.623 16 C 0.018 3.982 17 C -0.126 4.126 18 C -0.014 4.014 19 C 0.057 3.943 20 N -0.602 5.602 21 S 0.830 5.170 22 N -0.565 5.565 23 C 0.137 3.863 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.262 0.738 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -10.857 12.172 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.821 5.821 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.772 3.228 13 O -0.917 6.917 14 O -0.967 6.967 15 C -0.712 4.712 16 C -0.008 4.008 17 C -0.152 4.152 18 C -0.039 4.039 19 C -0.102 4.102 20 N -0.453 5.453 21 S 0.877 5.123 22 N -0.415 5.415 23 C -0.023 4.023 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.173 0.827 31 H 0.163 0.837 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.655 -9.275 11.887 15.091 hybrid contribution -0.971 -0.811 -0.343 1.311 sum -1.625 -10.086 11.544 15.415 Atomic orbital electron populations 1.21407 0.79999 1.03700 1.00279 1.57289 1.14112 1.22645 1.88099 1.19352 0.92513 0.78009 0.97571 1.21513 1.35824 1.06169 0.92956 0.92251 1.24896 0.95219 0.96552 0.97292 1.69929 1.37587 1.15203 1.30792 0.86544 0.77438 0.78812 0.84928 1.20726 1.21121 1.19717 1.02332 0.74080 0.72828 0.73510 1.93621 1.39750 1.83714 1.74581 1.93489 1.66683 1.60588 1.75990 1.30811 1.08747 1.04209 1.27444 1.20826 0.92020 0.92254 0.95656 1.20890 0.99929 1.00904 0.93448 1.20498 0.93333 0.89877 1.00224 1.21291 0.99583 0.98179 0.91138 1.72165 1.21229 1.12826 1.39125 1.78770 1.30584 1.19889 0.83020 1.72465 1.18080 1.17353 1.33597 1.20270 0.97698 0.91134 0.93161 0.94396 0.90093 0.91306 0.95390 0.91430 0.92872 0.82671 0.83690 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.68 59.85 0.64 2.26 16 2 N -0.98 -21.30 3.17 -123.05 -0.39 -21.69 16 3 C 0.25 6.40 5.08 -5.19 -0.03 6.38 16 4 C -0.52 -15.02 9.38 -34.44 -0.32 -15.34 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 S 2.69 55.96 5.56 -107.50 -0.60 55.36 16 13 O -0.93 -23.15 16.92 -57.17 -0.97 -24.11 16 14 O -0.98 -19.63 15.51 -57.17 -0.89 -20.51 16 15 C -0.62 -10.73 5.93 -39.21 -0.23 -10.96 16 16 C 0.02 0.24 9.43 -40.09 -0.38 -0.14 16 17 C -0.13 -1.25 9.89 -40.09 -0.40 -1.65 16 18 C -0.01 -0.16 10.09 -39.21 -0.40 -0.55 16 19 C 0.06 0.87 7.16 -83.17 -0.60 0.27 16 20 N -0.60 -8.91 11.44 25.63 0.29 -8.62 16 21 S 0.83 12.18 23.60 -107.50 -2.54 9.65 16 22 N -0.57 -11.00 9.49 25.63 0.24 -10.76 16 23 C 0.14 2.47 6.86 -83.17 -0.57 1.90 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 26 H 0.07 1.10 7.02 -51.93 -0.36 0.73 16 27 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 28 H 0.07 1.84 5.61 -51.93 -0.29 1.55 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.16 1.67 7.22 -52.49 -0.38 1.29 16 31 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 306.21 15.07 4.61 4.61 Total: -1.00 -35.93 306.21 -9.58 -45.51 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -2.69 Total: -4.84 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -2.38 Total: -16.15 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: 0.88 Total: -66.56 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -1.85 Total: -44.63 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 68.14 SS G_CDS: -3.13 Total: 65.01 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.93 -9.58 -45.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001817154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.334 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds