Wall clock time and date at job start Tue Mar 31 2020 04:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48500 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47430 * 300.00381 * 3 2 1 6 6 H 1.48497 * 109.47004 * 60.00354 * 3 2 1 7 7 C 1.40047 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00660 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99677 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00035 * 0.02562 * 9 7 2 11 11 N 1.34781 * 120.00183 * 180.02562 * 9 7 2 12 12 N 1.40092 * 120.00185 * 179.97438 * 11 9 7 13 13 C 1.37001 * 120.00217 * 179.97438 * 12 11 9 14 14 N 1.29328 * 119.99770 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00469 * 180.02562 * 13 12 11 16 16 S 1.81402 * 109.47519 * 179.97438 * 15 13 12 17 17 C 1.76207 * 103.00078 * 180.02562 * 16 15 13 18 18 C 1.38958 * 120.06497 * 0.27613 * 17 16 15 19 19 C 1.38086 * 119.92813 * 180.27812 * 18 17 16 20 20 C 1.38394 * 120.06741 * 359.44443 * 19 18 17 21 21 Cl 1.73601 * 119.93375 * 180.30157 * 20 19 18 22 22 C 1.38400 * 120.13420 * 0.28272 * 20 19 18 23 23 C 1.38078 * 120.06774 * 359.97438 * 22 20 19 24 24 H 0.97006 * 119.99731 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99730 * 0.02562 * 11 9 7 26 26 H 0.96996 * 120.00164 * 0.02562 * 12 11 9 27 27 H 0.97000 * 120.00244 * 0.02562 * 14 13 12 28 28 H 1.08998 * 109.47235 * 60.00074 * 15 13 12 29 29 H 1.09000 * 109.47340 * 300.00304 * 15 13 12 30 30 H 1.07998 * 120.03491 * 0.02562 * 18 17 16 31 31 H 1.08002 * 119.96910 * 179.72953 * 19 18 17 32 32 H 1.08000 * 119.96622 * 180.02562 * 22 20 19 33 33 H 1.08007 * 120.03719 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8821 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4804 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 7 1.2484 -4.8610 0.0000 13 6 1.9333 -6.0475 -0.0005 14 7 3.2266 -6.0475 -0.0010 15 6 1.1799 -7.3525 -0.0005 16 16 2.3586 -8.7314 -0.0021 17 6 1.3111 -10.1483 -0.0027 18 6 -0.0698 -9.9932 -0.0077 19 6 -0.8880 -11.1055 -0.0024 20 6 -0.3340 -12.3738 -0.0036 21 17 -1.3660 -13.7698 -0.0047 22 6 1.0409 -12.5314 -0.0042 23 6 1.8644 -11.4230 -0.0042 24 1 -0.4850 0.8401 0.0004 25 1 2.9189 -3.6477 -0.0002 26 1 0.2784 -4.8610 0.0000 27 1 3.7116 -5.2075 -0.0007 28 1 0.5529 -7.4101 -0.8903 29 1 0.5535 -7.4105 0.8896 30 1 -0.5026 -9.0037 -0.0117 31 1 -1.9613 -10.9857 -0.0019 32 1 1.4703 -13.5224 -0.0056 33 1 2.9373 -11.5466 -0.0052 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002512155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:08 Heat of formation + Delta-G solvation = 18.992708 kcal Electronic energy + Delta-G solvation = -19376.593315 eV Core-core repulsion = 15976.066721 eV Total energy + Delta-G solvation = -3400.526594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.039 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21638 -40.04057 -38.22051 -37.38365 -34.92724 -34.29611 -32.29388 -31.79808 -31.27039 -30.01449 -27.97485 -23.92281 -23.74239 -22.61867 -21.45263 -20.01012 -18.82205 -18.55536 -17.97272 -17.47365 -16.92871 -16.45187 -16.04621 -15.75308 -15.57731 -15.01713 -14.95462 -14.68290 -14.52750 -14.52555 -14.06008 -13.27487 -13.26502 -12.88807 -12.81897 -12.77006 -12.66379 -12.52831 -12.01849 -11.80070 -11.22443 -11.08913 -10.86944 -10.69069 -10.43511 -10.15378 -10.08874 -8.65863 -8.42689 -8.28972 -6.97285 0.00745 0.23458 0.27789 1.15868 1.35767 1.37338 1.43783 1.48879 1.50732 1.61554 2.25321 2.36208 2.54408 3.09729 3.48343 3.77207 3.88572 3.94984 4.01107 4.12255 4.26987 4.38903 4.55769 4.93246 4.98289 5.03909 5.20754 5.23430 5.23966 5.44055 5.69639 5.95896 6.16339 6.62675 6.75945 7.17117 7.39617 8.31384 8.52848 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.039134 B = 0.002064 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.324465 B =13561.972186 C =14262.152188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.032 3.968 3 Si 1.003 2.997 4 H -0.246 1.246 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.094 0.906 9 C 0.544 3.456 10 O -0.621 6.621 11 N -0.561 5.561 12 N -0.551 5.551 13 C 0.424 3.576 14 N -0.776 5.776 15 C -0.069 4.069 16 S -0.017 6.017 17 C -0.111 4.111 18 C -0.133 4.133 19 C -0.094 4.094 20 C -0.056 4.056 21 Cl -0.072 7.072 22 C -0.091 4.091 23 C -0.096 4.096 24 H 0.279 0.721 25 H 0.411 0.589 26 H 0.421 0.579 27 H 0.329 0.671 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 -22.098 -0.007 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.822 3.178 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.598 4.598 8 H 0.112 0.888 9 C 0.349 3.651 10 O -0.505 6.505 11 N -0.312 5.312 12 N -0.285 5.285 13 C 0.142 3.858 14 N -0.416 5.416 15 C -0.220 4.220 16 S 0.228 5.772 17 C -0.224 4.224 18 C -0.157 4.157 19 C -0.114 4.114 20 C -0.086 4.086 21 Cl -0.044 7.044 22 C -0.111 4.111 23 C -0.120 4.120 24 H 0.089 0.911 25 H 0.252 0.748 26 H 0.261 0.739 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.323 -22.573 -0.009 22.692 hybrid contribution -1.628 1.564 0.002 2.258 sum 0.695 -21.009 -0.007 21.020 Atomic orbital electron populations 1.70146 1.09423 1.29438 1.35211 1.26950 0.95629 1.04793 0.91063 0.84882 0.79331 0.74992 0.78623 1.16935 1.19280 1.19269 1.21258 0.95033 0.88594 1.54867 0.88795 1.18841 0.87278 0.82180 0.76802 1.90575 1.15501 1.86744 1.57704 1.45282 1.07321 0.95752 1.82856 1.44234 1.08167 0.96336 1.79725 1.21965 0.89349 0.84604 0.89895 1.69449 1.04552 1.34945 1.32674 1.22529 1.00172 0.90024 1.09297 1.86582 1.07587 0.91893 1.91156 1.22551 0.97471 0.99030 1.03381 1.21387 0.91698 1.00041 1.02614 1.21174 1.01366 0.90201 0.98638 1.21066 0.91831 0.88461 1.07204 1.98371 1.67574 1.41403 1.97016 1.21194 0.90992 1.00271 0.98690 1.20879 1.00949 0.89583 1.00596 0.91106 0.74800 0.73917 0.85276 0.84817 0.84811 0.83641 0.83342 0.82752 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.76 11.83 21.83 0.26 -46.50 16 2 C 0.03 1.69 5.50 85.30 0.47 2.15 16 3 Si 1.00 38.42 29.56 68.60 2.03 40.45 16 4 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.56 -29.67 9.54 24.83 0.24 -29.44 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 9 C 0.54 29.47 7.86 86.36 0.68 30.15 16 10 O -0.62 -38.32 14.86 -4.31 -0.06 -38.39 16 11 N -0.56 -24.13 6.26 -176.62 -1.11 -25.23 16 12 N -0.55 -19.94 6.35 -50.05 -0.32 -20.25 16 13 C 0.42 12.70 7.97 137.83 1.10 13.80 16 14 N -0.78 -24.97 12.63 -49.85 -0.63 -25.60 16 15 C -0.07 -1.47 4.84 71.23 0.34 -1.12 16 16 S -0.02 -0.37 20.94 -56.49 -1.18 -1.55 16 17 C -0.11 -2.08 6.11 22.62 0.14 -1.94 16 18 C -0.13 -2.22 9.36 22.41 0.21 -2.01 16 19 C -0.09 -1.49 9.82 22.27 0.22 -1.27 16 20 C -0.06 -0.91 6.32 22.35 0.14 -0.77 16 21 Cl -0.07 -1.12 28.95 -2.72 -0.08 -1.20 16 22 C -0.09 -1.37 9.82 22.27 0.22 -1.15 16 23 C -0.10 -1.59 9.79 22.40 0.22 -1.37 16 24 H 0.28 14.43 8.29 -92.70 -0.77 13.66 16 25 H 0.41 15.81 6.72 -213.32 -1.43 14.38 16 26 H 0.42 15.27 8.03 -213.33 -1.71 13.56 16 27 H 0.33 10.84 6.70 -92.71 -0.62 10.22 16 28 H 0.13 2.27 7.73 -2.39 -0.02 2.25 16 29 H 0.13 2.27 7.76 -2.39 -0.02 2.26 16 30 H 0.15 1.95 5.88 -2.91 -0.02 1.94 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -69.86 322.77 0.32 -69.54 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -2.56 Total: 41.71 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 3.97 Total: 7.02 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -1.79 Total: -117.59 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.06 Total: -38.39 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -1.18 Total: -1.55 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -69.86 0.32 -69.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002512155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.533 kcal (2) G-P(sol) polarization free energy of solvation -69.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds