Wall clock time and date at job start Tue Mar 31 2020 04:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00088 * 2 1 4 4 C 1.50695 * 109.46974 * 269.99794 * 3 2 1 5 5 H 1.07998 * 120.00050 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99878 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00041 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99959 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47153 * 59.99938 * 8 6 4 10 10 H 1.48503 * 109.47113 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46812 * 299.99826 * 8 6 4 12 12 C 1.34772 * 119.99712 * 179.97438 * 2 1 3 13 13 O 1.21596 * 119.99930 * 180.02562 * 12 2 1 14 14 N 1.34777 * 120.00333 * 0.02562 * 12 2 1 15 15 C 1.40000 * 120.00135 * 184.58727 * 14 12 2 16 16 C 1.38876 * 120.05512 * 144.90773 * 15 14 12 17 17 C 1.38097 * 119.93963 * 180.23167 * 16 15 14 18 18 C 1.38399 * 120.05745 * 359.49383 * 17 16 15 19 19 Cl 1.73601 * 119.94423 * 180.23055 * 18 17 16 20 20 C 1.38359 * 120.11212 * 0.51265 * 18 17 16 21 21 N 1.48019 * 119.97109 * 179.76419 * 20 18 17 22 22 O 1.21798 * 120.00196 * 179.97438 * 21 20 18 23 23 O 1.21798 * 120.00034 * 359.97438 * 21 20 18 24 24 C 1.38133 * 120.06031 * 359.73868 * 20 18 17 25 25 H 1.09005 * 109.47389 * 269.99938 * 1 2 3 26 26 H 1.08997 * 109.47145 * 30.00144 * 1 2 3 27 27 H 1.09004 * 109.47258 * 150.00217 * 1 2 3 28 28 H 1.09005 * 109.47163 * 29.99627 * 3 2 1 29 29 H 1.08997 * 109.47007 * 149.99857 * 3 2 1 30 30 H 0.97006 * 119.99646 * 180.02562 * 7 6 4 31 31 H 0.97002 * 119.99835 * 4.58948 * 14 12 2 32 32 H 1.07994 * 120.03038 * 359.96229 * 16 15 14 33 33 H 1.07998 * 119.96677 * 179.75107 * 17 16 15 34 34 H 1.08002 * 120.03287 * 179.97438 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2416 6 6 3.1260 2.8779 -1.6727 7 7 3.5524 3.6185 -0.6731 8 14 3.4368 3.4174 -3.4340 9 1 2.1391 3.5946 -4.1337 10 1 4.1794 4.7034 -3.4340 11 1 4.2396 2.3828 -4.1342 12 6 2.1388 -1.1672 0.0005 13 8 3.3547 -1.1672 0.0010 14 7 1.4649 -2.3344 0.0005 15 6 2.1615 -3.5449 0.0980 16 6 1.6090 -4.6110 0.7957 17 6 2.3003 -5.8024 0.8945 18 6 3.5380 -5.9379 0.2900 19 17 4.4018 -7.4389 0.4110 20 6 4.0906 -4.8771 -0.4055 21 7 5.4168 -5.0238 -1.0464 22 8 5.9036 -4.0905 -1.6592 23 8 6.0213 -6.0777 -0.9609 24 6 3.4056 -3.6816 -0.5029 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0287 4.4448 -0.8504 31 1 0.4972 -2.3357 -0.0671 32 1 0.6416 -4.5071 1.2643 33 1 1.8729 -6.6305 1.4403 34 1 3.8375 -2.8538 -1.0456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003086249.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:46 Heat of formation + Delta-G solvation = -8.461100 kcal Electronic energy + Delta-G solvation = -23300.137470 eV Core-core repulsion = 19455.667519 eV Total energy + Delta-G solvation = -3844.469951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.36520 -41.93156 -40.17972 -38.01685 -37.61421 -36.80381 -36.04356 -34.67184 -33.13747 -31.15390 -29.53217 -27.80898 -27.41781 -25.43513 -24.16666 -23.45360 -21.31793 -20.73671 -19.79060 -19.04604 -18.73831 -18.69902 -18.07969 -17.79922 -17.01100 -16.77521 -16.42241 -15.70130 -15.34686 -15.11964 -14.77045 -14.44145 -13.94173 -13.87894 -13.54500 -13.51299 -13.29150 -13.16174 -13.00295 -12.83274 -12.56637 -12.54244 -12.35341 -12.21147 -11.78577 -11.63888 -11.54865 -11.16515 -10.71737 -10.65351 -9.75184 -9.32354 -8.24334 -6.38683 -1.40499 -0.34952 0.13621 0.18589 0.73010 1.35250 1.40380 1.44703 1.50206 1.85036 2.24208 2.37790 2.86817 3.06400 3.13757 3.49556 3.62615 3.73092 4.17673 4.27231 4.41135 4.56899 4.64729 4.75564 4.87837 4.93241 4.96196 5.10100 5.18947 5.43934 5.48760 5.70622 5.93050 6.02484 6.39472 6.69725 6.90684 7.27641 7.47476 8.82123 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.003623 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.447364 B = 7727.531357 C = 8890.965745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.613 5.613 3 C 0.275 3.725 4 C -0.546 4.546 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.962 3.038 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.283 1.283 12 C 0.689 3.311 13 O -0.620 6.620 14 N -0.666 5.666 15 C 0.173 3.827 16 C -0.052 4.052 17 C -0.068 4.068 18 C -0.012 4.012 19 Cl -0.010 7.010 20 C -0.041 4.041 21 N 0.027 4.973 22 O -0.234 6.234 23 O -0.112 6.112 24 C -0.079 4.079 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.034 0.966 29 H -0.001 1.001 30 H 0.267 0.733 31 H 0.433 0.567 32 H 0.211 0.789 33 H 0.210 0.790 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 -21.621 5.666 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.347 5.347 3 C 0.154 3.846 4 C -0.584 4.584 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.787 3.213 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.209 1.209 12 C 0.391 3.609 13 O -0.499 6.499 14 N -0.319 5.319 15 C 0.075 3.925 16 C -0.073 4.073 17 C -0.087 4.087 18 C -0.042 4.042 19 Cl 0.019 6.981 20 C -0.126 4.126 21 N 0.543 4.457 22 O -0.430 6.430 23 O -0.343 6.343 24 C -0.101 4.101 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.017 0.983 30 H 0.076 0.924 31 H 0.276 0.724 32 H 0.228 0.772 33 H 0.227 0.773 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.765 -21.190 5.972 25.448 hybrid contribution 1.074 0.906 -1.321 1.928 sum -11.691 -20.284 4.651 23.869 Atomic orbital electron populations 1.21999 0.77280 1.04290 1.03200 1.47367 1.08329 1.04572 1.74439 1.18728 0.91043 0.78961 0.95911 1.21689 1.37046 1.06491 0.93208 0.92882 1.25781 0.94890 0.96510 1.01638 1.70024 1.38821 1.14788 1.32932 0.85554 0.78906 0.77303 0.79581 1.18170 1.20342 1.20884 1.16168 0.85037 0.81377 0.78330 1.90930 1.14107 1.86289 1.58619 1.42533 1.11149 1.01426 1.76798 1.17551 0.91446 0.87216 0.96250 1.21867 1.02796 0.89468 0.93122 1.21521 0.89575 1.00024 0.97571 1.21028 0.96003 0.87816 0.99353 1.98454 1.75718 1.27707 1.96197 1.20752 0.86123 0.97977 1.07725 1.43793 1.02968 0.99919 0.99045 1.94645 1.71394 1.33330 1.43680 1.94492 1.61625 1.15587 1.62586 1.21078 0.96059 0.95048 0.97961 0.90224 0.90868 0.88943 0.94793 0.98279 0.92361 0.72443 0.77214 0.77304 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.76 10.24 127.77 1.31 3.07 16 2 N -0.61 -23.69 2.86 -869.32 -2.48 -26.17 16 3 C 0.28 14.21 5.16 85.63 0.44 14.65 16 4 C -0.55 -30.79 9.39 25.60 0.24 -30.55 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.64 5.46 84.65 0.46 1.11 16 7 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 8 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 12 C 0.69 26.66 8.12 179.06 1.45 28.11 16 13 O -0.62 -31.44 13.36 -4.02 -0.05 -31.50 16 14 N -0.67 -16.04 5.22 -317.14 -1.65 -17.69 16 15 C 0.17 3.96 6.30 38.13 0.24 4.20 16 16 C -0.05 -0.55 9.97 22.39 0.22 -0.32 16 17 C -0.07 -0.72 9.82 22.27 0.22 -0.50 16 18 C -0.01 -0.25 6.32 22.34 0.14 -0.11 16 19 Cl -0.01 -0.20 25.93 -2.72 -0.07 -0.27 16 20 C -0.04 -1.22 6.85 36.38 0.25 -0.97 16 21 N 0.03 0.99 4.45 -46.45 -0.21 0.79 16 22 O -0.23 -10.01 18.45 18.89 0.35 -9.66 16 23 O -0.11 -3.73 16.01 18.89 0.30 -3.43 16 24 C -0.08 -2.57 8.20 22.39 0.18 -2.38 16 25 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 27 H 0.09 1.39 6.30 -2.38 -0.02 1.38 16 28 H 0.03 1.75 8.07 -2.38 -0.02 1.73 16 29 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 30 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 31 H 0.43 5.98 6.52 -92.71 -0.60 5.38 16 32 H 0.21 -0.05 8.06 -2.91 -0.02 -0.07 16 33 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.13 5.76 5.77 -2.91 -0.02 5.75 16 Total: -1.00 -84.32 318.78 4.23 -80.09 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 0.57 Total: -0.25 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.16 Total: 16.30 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -4.06 Total: -98.30 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: 0.60 Total: -44.59 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.07 Total: -0.27 kcal Total: -84.32 4.23 -80.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003086249.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.630 kcal (2) G-P(sol) polarization free energy of solvation -84.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds