Wall clock time and date at job start Tue Mar 31 2020 04:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 117.00222 * 2 1 4 4 C 1.38541 * 120.06845 * 359.72264 * 3 2 1 5 5 C 1.38247 * 120.02542 * 180.25754 * 4 3 2 6 6 C 1.38374 * 120.16545 * 0.04543 * 5 4 3 7 7 Cl 1.73603 * 119.93148 * 179.97438 * 6 5 4 8 8 C 1.38304 * 120.13691 * 359.95055 * 6 5 4 9 9 C 1.38700 * 119.97020 * 0.02956 * 8 6 5 10 10 N 1.40164 * 120.08324 * 179.97438 * 9 8 6 11 11 C 1.34783 * 119.99533 * 24.77791 * 10 9 8 12 12 O 1.21589 * 119.99906 * 5.64978 * 11 10 9 13 13 N 1.34779 * 119.99806 * 185.65119 * 11 10 9 14 14 N 1.40104 * 120.00191 * 359.97438 * 13 11 10 15 15 C 1.34770 * 119.99974 * 179.97438 * 14 13 11 16 16 O 1.21680 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.46382 * 119.99767 * 180.02562 * 15 14 13 18 18 H 1.08003 * 120.00096 * 359.97438 * 17 15 14 19 19 C 1.40042 * 119.99853 * 179.97438 * 17 15 14 20 20 N 1.30679 * 120.00301 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00109 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47224 * 90.00100 * 21 19 17 23 23 H 1.48507 * 109.47309 * 210.00160 * 21 19 17 24 24 H 1.48502 * 109.47072 * 329.99861 * 21 19 17 25 25 H 1.08991 * 109.47127 * 59.99536 * 1 2 3 26 26 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46780 * 300.00325 * 1 2 3 28 28 H 1.07995 * 119.98348 * 0.25666 * 4 3 2 29 29 H 1.08005 * 119.91705 * 180.02562 * 5 4 3 30 30 H 1.07996 * 120.01318 * 180.02562 * 8 6 5 31 31 H 0.96998 * 120.00455 * 204.78277 * 10 9 8 32 32 H 0.96997 * 120.00024 * 179.97438 * 13 11 10 33 33 H 0.97006 * 119.99799 * 0.02562 * 14 13 11 34 34 H 0.96998 * 120.00076 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3746 -0.0058 5 6 1.9220 3.6058 -0.0112 6 6 3.3037 3.6811 -0.0117 7 17 4.0867 5.2305 -0.0192 8 6 4.0621 2.5246 -0.0059 9 6 3.4373 1.2863 -0.0001 10 7 4.2036 0.1127 0.0053 11 6 5.4595 0.1303 0.4944 12 8 5.8917 1.1358 1.0240 13 7 6.2362 -0.9668 0.3963 14 7 5.7381 -2.1256 -0.2135 15 6 6.5150 -3.2224 -0.3121 16 8 7.6492 -3.2062 0.1282 17 6 5.9946 -4.4330 -0.9497 18 1 4.9880 -4.4473 -1.3408 19 6 6.8021 -5.5725 -1.0526 20 7 8.0202 -5.5551 -0.5798 21 14 6.1379 -7.1176 -1.8657 22 1 6.4363 -7.0791 -3.3199 23 1 6.7808 -8.3114 -1.2599 24 1 4.6685 -7.1908 -1.6636 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2148 2.3191 -0.0061 29 1 1.3332 4.5113 -0.0153 30 1 5.1403 2.5857 -0.0059 31 1 3.8303 -0.7120 -0.3429 32 1 7.1401 -0.9541 0.7479 33 1 4.8342 -2.1382 -0.5655 34 1 8.5796 -6.3443 -0.6514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003086254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:28 Heat of formation + Delta-G solvation = -39.243702 kcal Electronic energy + Delta-G solvation = -22936.923331 eV Core-core repulsion = 19091.118546 eV Total energy + Delta-G solvation = -3845.804785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.96552 -39.58771 -37.85859 -37.38857 -36.27310 -34.78004 -34.38341 -32.65362 -30.47452 -30.03297 -29.36156 -27.41658 -26.21438 -23.45837 -22.43634 -21.06830 -20.53575 -19.19662 -18.26008 -17.40493 -17.14204 -16.31813 -16.11503 -15.96514 -15.39858 -15.19718 -15.05768 -14.47121 -14.28600 -13.98156 -13.81077 -13.49299 -12.91075 -12.70659 -12.61931 -12.34374 -12.10920 -11.61152 -11.46878 -11.22898 -11.03068 -11.02688 -10.76152 -10.50526 -10.44997 -10.25858 -9.96347 -9.04277 -8.70152 -8.04597 -7.93200 -7.26747 -6.45041 -4.92285 1.04068 1.09195 2.07889 2.64111 2.95503 3.02301 3.09830 3.13165 3.14730 3.32029 3.62258 4.00244 4.33783 4.53138 4.66710 4.89505 4.90942 5.04052 5.16121 5.25445 5.46284 5.51535 5.64891 5.81449 5.93078 6.09873 6.24160 6.60408 6.88893 7.08049 7.13473 7.21031 7.65702 7.99539 8.28589 8.73425 8.79619 9.03983 10.27885 10.47225 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.003186 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.855706 B = 8786.443089 C =10044.021412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.096 3.904 4 C -0.175 4.175 5 C -0.099 4.099 6 C -0.046 4.046 7 Cl -0.070 7.070 8 C -0.092 4.092 9 C 0.168 3.832 10 N -0.675 5.675 11 C 0.703 3.297 12 O -0.584 6.584 13 N -0.513 5.513 14 N -0.571 5.571 15 C 0.555 3.445 16 O -0.571 6.571 17 C -0.533 4.533 18 H 0.075 0.925 19 C 0.087 3.913 20 N -0.760 5.760 21 Si 0.918 3.082 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.168 0.832 31 H 0.412 0.588 32 H 0.442 0.558 33 H 0.399 0.601 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.890 12.870 -1.425 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.048 3.952 4 C -0.195 4.195 5 C -0.119 4.119 6 C -0.074 4.074 7 Cl -0.042 7.042 8 C -0.113 4.113 9 C 0.070 3.930 10 N -0.324 5.324 11 C 0.403 3.597 12 O -0.461 6.461 13 N -0.262 5.262 14 N -0.328 5.328 15 C 0.361 3.639 16 O -0.451 6.451 17 C -0.571 4.571 18 H 0.094 0.906 19 C -0.135 4.135 20 N -0.388 5.388 21 Si 0.742 3.258 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.187 1.187 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.185 0.815 31 H 0.250 0.750 32 H 0.287 0.713 33 H 0.238 0.762 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.429 13.360 -0.722 20.423 hybrid contribution -0.826 -0.945 -0.564 1.376 sum -16.256 12.415 -1.286 20.495 Atomic orbital electron populations 1.23086 0.77901 1.04303 1.01319 1.86064 1.21740 1.26003 1.88963 1.18703 0.90190 0.85328 1.00999 1.20900 1.00007 0.90899 1.07687 1.20730 0.92278 0.97924 1.00944 1.20562 0.92407 0.86671 1.07716 1.98358 1.81132 1.27579 1.97102 1.21246 1.02684 0.88213 0.99169 1.16652 0.86374 0.86419 1.03528 1.42431 1.13658 1.11347 1.64930 1.15643 0.80623 0.83330 0.80134 1.90923 1.73374 1.30707 1.51048 1.44283 1.16884 1.04778 1.60271 1.46025 1.17321 1.04477 1.65025 1.18638 0.84788 0.80399 0.80114 1.90647 1.19170 1.82404 1.52913 1.20655 1.01179 0.94648 1.40633 0.90632 1.25723 0.94214 0.99722 0.93798 1.69999 1.06636 1.29052 1.33121 0.86196 0.79840 0.80178 0.79583 1.19523 1.20280 1.18678 0.92519 0.87922 0.92556 0.84272 0.84799 0.81487 0.75024 0.71256 0.76228 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.47 9.91 -19.74 -0.20 -3.67 16 3 C 0.10 1.15 6.70 -39.08 -0.26 0.89 16 4 C -0.18 -1.70 9.04 -39.47 -0.36 -2.06 16 5 C -0.10 -1.01 9.82 -39.53 -0.39 -1.39 16 6 C -0.05 -0.58 6.32 -39.51 -0.25 -0.83 16 7 Cl -0.07 -0.83 28.95 -51.86 -1.50 -2.33 16 8 C -0.09 -1.35 8.50 -39.39 -0.33 -1.68 16 9 C 0.17 2.42 6.45 -83.49 -0.54 1.88 16 10 N -0.67 -10.38 5.25 -14.11 -0.07 -10.46 16 11 C 0.70 12.90 8.48 -86.91 -0.74 12.16 16 12 O -0.58 -11.76 14.35 5.29 0.08 -11.69 16 13 N -0.51 -10.17 6.26 27.64 0.17 -9.99 16 14 N -0.57 -11.82 6.25 30.19 0.19 -11.63 16 15 C 0.56 14.54 7.86 -12.99 -0.10 14.44 16 16 O -0.57 -17.24 14.86 5.21 0.08 -17.16 16 17 C -0.53 -13.67 9.54 -35.63 -0.34 -14.01 16 18 H 0.08 1.71 7.85 -52.48 -0.41 1.30 16 19 C 0.09 2.24 5.50 -17.37 -0.10 2.14 16 20 N -0.76 -21.33 11.83 55.55 0.66 -20.67 16 21 Si 0.92 18.57 29.56 -169.99 -5.02 13.54 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 28 H 0.14 0.92 6.30 -52.49 -0.33 0.59 16 29 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.17 2.78 5.79 -52.49 -0.30 2.48 16 31 H 0.41 5.74 6.28 -40.82 -0.26 5.49 16 32 H 0.44 9.28 8.10 -182.60 -1.48 7.80 16 33 H 0.40 6.92 6.70 -182.59 -1.22 5.69 16 34 H 0.27 6.94 8.29 -40.82 -0.34 6.61 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -32.81 317.38 -8.03 -40.85 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -4.78 Total: 15.70 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -2.41 Total: 12.74 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.94 Total: -52.76 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.04 Total: -32.52 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.54 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.81 -8.03 -40.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003086254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.602 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds