Wall clock time and date at job start Tue Mar 31 2020 04:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 117.00222 * 2 1 4 4 C 1.38541 * 120.06845 * 359.72264 * 3 2 1 5 5 C 1.38247 * 120.02542 * 180.25754 * 4 3 2 6 6 C 1.38374 * 120.16545 * 0.04543 * 5 4 3 7 7 Cl 1.73603 * 119.93148 * 179.97438 * 6 5 4 8 8 C 1.38304 * 120.13691 * 359.95055 * 6 5 4 9 9 C 1.38700 * 119.97020 * 0.02956 * 8 6 5 10 10 N 1.40164 * 120.08324 * 179.97438 * 9 8 6 11 11 C 1.34783 * 119.99533 * 24.77791 * 10 9 8 12 12 O 1.21589 * 119.99906 * 5.64978 * 11 10 9 13 13 N 1.34779 * 119.99806 * 185.65119 * 11 10 9 14 14 N 1.40104 * 120.00191 * 359.97438 * 13 11 10 15 15 C 1.34770 * 119.99974 * 179.97438 * 14 13 11 16 16 O 1.21680 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.46382 * 119.99767 * 180.02562 * 15 14 13 18 18 H 1.08003 * 120.00096 * 359.97438 * 17 15 14 19 19 C 1.40042 * 119.99853 * 179.97438 * 17 15 14 20 20 N 1.30679 * 120.00301 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00109 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47224 * 90.00100 * 21 19 17 23 23 H 1.48507 * 109.47309 * 210.00160 * 21 19 17 24 24 H 1.48502 * 109.47072 * 329.99861 * 21 19 17 25 25 H 1.08991 * 109.47127 * 59.99536 * 1 2 3 26 26 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46780 * 300.00325 * 1 2 3 28 28 H 1.07995 * 119.98348 * 0.25666 * 4 3 2 29 29 H 1.08005 * 119.91705 * 180.02562 * 5 4 3 30 30 H 1.07996 * 120.01318 * 180.02562 * 8 6 5 31 31 H 0.96998 * 120.00455 * 204.78277 * 10 9 8 32 32 H 0.96997 * 120.00024 * 179.97438 * 13 11 10 33 33 H 0.97006 * 119.99799 * 0.02562 * 14 13 11 34 34 H 0.96998 * 120.00076 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3746 -0.0058 5 6 1.9220 3.6058 -0.0112 6 6 3.3037 3.6811 -0.0117 7 17 4.0867 5.2305 -0.0192 8 6 4.0621 2.5246 -0.0059 9 6 3.4373 1.2863 -0.0001 10 7 4.2036 0.1127 0.0053 11 6 5.4595 0.1303 0.4944 12 8 5.8917 1.1358 1.0240 13 7 6.2362 -0.9668 0.3963 14 7 5.7381 -2.1256 -0.2135 15 6 6.5150 -3.2224 -0.3121 16 8 7.6492 -3.2062 0.1282 17 6 5.9946 -4.4330 -0.9497 18 1 4.9880 -4.4473 -1.3408 19 6 6.8021 -5.5725 -1.0526 20 7 8.0202 -5.5551 -0.5798 21 14 6.1379 -7.1176 -1.8657 22 1 6.4363 -7.0791 -3.3199 23 1 6.7808 -8.3114 -1.2599 24 1 4.6685 -7.1908 -1.6636 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2148 2.3191 -0.0061 29 1 1.3332 4.5113 -0.0153 30 1 5.1403 2.5857 -0.0059 31 1 3.8303 -0.7120 -0.3429 32 1 7.1401 -0.9541 0.7479 33 1 4.8342 -2.1382 -0.5655 34 1 8.5796 -6.3443 -0.6514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003086254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:27 Heat of formation + Delta-G solvation = -63.932595 kcal Electronic energy + Delta-G solvation = -22937.993922 eV Core-core repulsion = 19091.118546 eV Total energy + Delta-G solvation = -3846.875376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.13681 -40.77226 -39.42233 -38.57659 -37.24477 -36.45138 -35.70126 -34.63611 -31.96761 -31.13732 -30.44814 -28.18115 -28.02244 -24.56040 -23.36628 -22.82040 -21.96649 -20.59575 -19.29338 -19.01187 -18.44729 -17.74969 -17.33277 -16.99920 -16.77427 -16.51338 -16.28198 -15.76420 -15.70694 -15.22376 -14.97682 -14.66828 -14.52815 -14.35139 -13.43505 -13.31478 -13.22527 -12.95155 -12.80986 -12.72865 -12.30953 -12.12397 -12.02857 -11.98400 -11.89232 -11.51860 -11.31265 -10.94842 -10.12870 -9.70445 -9.16751 -8.77730 -8.37861 -6.94144 0.09205 0.15022 1.08735 1.16950 1.45307 1.47156 1.62981 1.77113 1.86520 2.26469 2.32039 2.40243 2.60067 3.52718 3.72354 3.86967 3.99998 4.12767 4.31540 4.44030 4.49556 4.64620 4.67535 4.83780 5.08734 5.16922 5.20121 5.24745 5.29057 5.55176 5.74771 5.82345 6.15043 6.31854 6.74625 6.78230 7.20132 7.25173 8.32657 8.57271 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.003186 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.855706 B = 8786.443089 C =10044.021412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.102 3.898 4 C -0.163 4.163 5 C -0.083 4.083 6 C -0.059 4.059 7 Cl -0.070 7.070 8 C -0.110 4.110 9 C 0.132 3.868 10 N -0.664 5.664 11 C 0.707 3.293 12 O -0.603 6.603 13 N -0.522 5.522 14 N -0.554 5.554 15 C 0.541 3.459 16 O -0.622 6.622 17 C -0.553 4.553 18 H 0.104 0.896 19 C 0.030 3.970 20 N -0.816 5.816 21 Si 1.006 2.994 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.243 1.243 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.180 0.820 29 H 0.166 0.834 30 H 0.139 0.861 31 H 0.418 0.582 32 H 0.433 0.567 33 H 0.417 0.583 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.915 12.770 -2.402 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.054 3.946 4 C -0.182 4.182 5 C -0.102 4.102 6 C -0.087 4.087 7 Cl -0.041 7.041 8 C -0.131 4.131 9 C 0.036 3.964 10 N -0.313 5.313 11 C 0.407 3.593 12 O -0.481 6.481 13 N -0.270 5.270 14 N -0.311 5.311 15 C 0.347 3.653 16 O -0.506 6.506 17 C -0.591 4.591 18 H 0.122 0.878 19 C -0.186 4.186 20 N -0.445 5.445 21 Si 0.824 3.176 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.166 1.166 25 H 0.094 0.906 26 H 0.134 0.866 27 H 0.089 0.911 28 H 0.197 0.803 29 H 0.184 0.816 30 H 0.156 0.844 31 H 0.257 0.743 32 H 0.277 0.723 33 H 0.259 0.741 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.566 13.321 -1.719 23.732 hybrid contribution 0.287 -0.768 -0.239 0.854 sum -19.279 12.552 -1.958 23.088 Atomic orbital electron populations 1.23454 0.75456 1.05909 1.02943 1.86055 1.24259 1.25616 1.88636 1.18781 0.89304 0.86666 0.99835 1.21344 1.01782 0.89563 1.05531 1.21136 0.91241 0.99517 0.98353 1.20686 0.93438 0.86031 1.08530 1.98354 1.81426 1.27228 1.97138 1.21051 1.01621 0.89566 1.00868 1.16886 0.87612 0.85649 1.06277 1.42235 1.12501 1.12244 1.64312 1.15681 0.81343 0.82395 0.79891 1.90914 1.74096 1.31153 1.51951 1.44327 1.16930 1.04814 1.60978 1.45424 1.17455 1.03974 1.64213 1.19003 0.84524 0.81816 0.79948 1.90607 1.21385 1.83648 1.54962 1.21251 1.02575 0.94746 1.40521 0.87798 1.27017 0.94111 1.03691 0.93811 1.70169 1.08692 1.30574 1.35070 0.84889 0.79902 0.74538 0.78239 1.18676 1.20218 1.16559 0.90576 0.86587 0.91091 0.80272 0.81612 0.84379 0.74341 0.72299 0.74134 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.45 9.91 -93.55 -0.93 -7.38 16 3 C 0.10 2.23 6.70 22.59 0.15 2.38 16 4 C -0.16 -2.53 9.04 22.34 0.20 -2.33 16 5 C -0.08 -1.42 9.82 22.30 0.22 -1.20 16 6 C -0.06 -1.42 6.32 22.32 0.14 -1.28 16 7 Cl -0.07 -1.61 28.95 -2.72 -0.08 -1.69 16 8 C -0.11 -3.27 8.50 22.40 0.19 -3.08 16 9 C 0.13 3.76 6.45 38.17 0.25 4.01 16 10 N -0.66 -20.62 5.25 -316.80 -1.66 -22.28 16 11 C 0.71 26.89 8.48 179.05 1.52 28.41 16 12 O -0.60 -25.47 14.35 -4.00 -0.06 -25.53 16 13 N -0.52 -21.55 6.26 -184.74 -1.16 -22.70 16 14 N -0.55 -23.37 6.25 -176.63 -1.10 -24.48 16 15 C 0.54 29.08 7.86 86.36 0.68 29.76 16 16 O -0.62 -39.19 14.86 -4.28 -0.06 -39.25 16 17 C -0.55 -28.31 9.54 24.83 0.24 -28.07 16 18 H 0.10 4.53 7.85 -2.91 -0.02 4.51 16 19 C 0.03 1.55 5.50 85.30 0.47 2.02 16 20 N -0.82 -46.99 11.83 21.83 0.26 -46.73 16 21 Si 1.01 37.33 29.56 68.60 2.03 39.35 16 22 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 23 H -0.28 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.24 -8.15 7.11 99.48 0.71 -7.44 16 25 H 0.08 0.44 7.65 -2.39 -0.02 0.43 16 26 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.48 7.67 -2.38 -0.02 0.47 16 28 H 0.18 1.32 6.30 -2.91 -0.02 1.31 16 29 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.14 4.89 5.79 -2.91 -0.02 4.87 16 31 H 0.42 11.53 6.28 -92.71 -0.58 10.95 16 32 H 0.43 19.35 8.10 -213.32 -1.73 17.62 16 33 H 0.42 14.37 6.70 -213.31 -1.43 12.94 16 34 H 0.28 14.51 8.29 -92.71 -0.77 13.74 16 Total: -1.00 -74.82 317.38 -0.12 -74.94 By element: Atomic # 1 Polarization: 46.40 SS G_CDS: -2.52 Total: 43.87 kcal Atomic # 6 Polarization: 26.72 SS G_CDS: 5.17 Total: 31.89 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -3.66 Total: -116.20 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -1.05 Total: -72.17 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.35 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -74.82 -0.12 -74.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003086254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.008 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds