Wall clock time and date at job start Tue Mar 31 2020 04:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48497 * 109.46998 * 240.00378 * 3 2 1 5 5 H 1.48502 * 109.46852 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46879 * 120.00169 * 3 2 1 7 7 C 1.40268 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.40374 * 119.99906 * 359.97438 * 7 2 1 10 10 N 1.33064 * 126.31644 * 0.02648 * 9 7 2 11 11 C 1.32234 * 109.79556 * 179.97438 * 10 9 7 12 12 C 1.50701 * 125.15210 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47343 * 90.00083 * 12 11 10 14 14 C 1.35951 * 116.99948 * 179.97438 * 13 12 11 15 15 C 1.38690 * 120.04851 * 359.73076 * 14 13 12 16 16 C 1.38152 * 119.96843 * 179.67367 * 15 14 13 17 17 C 1.38377 * 120.06379 * 0.62223 * 16 15 14 18 18 Cl 1.73604 * 119.95282 * 179.70149 * 17 16 15 19 19 C 1.38347 * 120.09244 * 359.67474 * 17 16 15 20 20 C 1.38258 * 120.02722 * 359.97438 * 19 17 16 21 21 Cl 1.73601 * 120.02917 * 179.97438 * 20 19 17 22 22 N 1.31395 * 109.68727 * 0.02562 * 11 10 9 23 23 N 1.37027 * 126.31140 * 180.02562 * 9 7 2 24 24 H 0.96997 * 127.01721 * 0.02562 * 23 9 7 25 25 H 0.97008 * 119.99864 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46772 * 210.00236 * 12 11 10 27 27 H 1.08996 * 109.47295 * 329.99316 * 12 11 10 28 28 H 1.08006 * 120.01329 * 359.96762 * 15 14 13 29 29 H 1.08006 * 119.96475 * 180.31824 * 16 15 14 30 30 H 1.07993 * 119.98409 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2754 2.7465 0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0878 -1.2148 -0.0001 9 6 1.3058 -2.4304 -0.0005 10 7 -0.0168 -2.5768 -0.0006 11 6 -0.3250 -3.8627 -0.0011 12 6 -1.7255 -4.4192 -0.0019 13 8 -2.1677 -4.5946 -1.3493 14 6 -3.4200 -5.0928 -1.5280 15 6 -4.2041 -5.4111 -0.4292 16 6 -5.4789 -5.9109 -0.6127 17 6 -5.9695 -6.1063 -1.8918 18 17 -7.5689 -6.7417 -2.1190 19 6 -5.1872 -5.7953 -2.9897 20 6 -3.9136 -5.2882 -2.8105 21 17 -2.9318 -4.8986 -4.1882 22 7 0.7748 -4.5815 -0.0009 23 7 1.8563 -3.6853 -0.0005 24 1 2.8001 -3.9089 -0.0002 25 1 -0.4850 0.8401 0.0004 26 1 -1.7347 -5.3806 0.5117 27 1 -2.3920 -3.7265 0.5120 28 1 -3.8200 -5.2640 0.5694 29 1 -6.0914 -6.1540 0.2430 30 1 -5.5720 -5.9481 -3.9872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003470270.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:13 Heat of formation + Delta-G solvation = 50.785920 kcal Electronic energy + Delta-G solvation = -19995.506511 eV Core-core repulsion = 16458.481773 eV Total energy + Delta-G solvation = -3537.024738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 313.013 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30276 -39.75610 -37.73016 -36.59611 -36.07059 -33.71997 -31.56599 -31.06920 -29.83398 -29.53411 -27.19104 -25.68343 -23.07845 -22.40937 -20.74708 -19.23571 -18.42820 -17.23649 -16.73270 -16.43727 -16.07316 -15.47657 -14.95049 -14.72857 -14.16986 -13.91298 -13.65998 -13.38111 -13.09694 -12.63729 -12.30622 -12.25258 -11.82131 -11.46837 -11.30331 -11.29037 -11.03196 -10.89451 -10.78656 -10.65712 -10.40209 -10.07117 -9.53116 -9.09882 -8.52120 -8.12832 -7.97848 -7.95519 -6.67994 -4.80038 0.91282 1.02866 1.83333 2.31166 2.75354 3.00009 3.04509 3.06045 3.35003 3.60993 3.84697 4.34415 4.47828 4.60336 4.71483 4.88740 5.17844 5.32488 5.34826 5.40774 5.49499 5.56449 5.73547 5.90527 6.00222 6.30159 6.68807 7.05860 7.36726 7.48757 7.85952 8.14460 8.20523 8.65166 9.06862 10.04106 10.24574 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.003019 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.801016 B = 9273.022781 C = 9361.496425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.082 3.918 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.450 4.450 8 H 0.087 0.913 9 C 0.408 3.592 10 N -0.544 5.544 11 C 0.204 3.796 12 C 0.168 3.832 13 O -0.285 6.285 14 C 0.164 3.836 15 C -0.191 4.191 16 C -0.062 4.062 17 C -0.074 4.074 18 Cl -0.070 7.070 19 C -0.064 4.064 20 C -0.065 4.065 21 Cl -0.043 7.043 22 N -0.390 5.390 23 N -0.557 5.557 24 H 0.416 0.584 25 H 0.279 0.721 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 -7.812 -2.226 13.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.145 4.145 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.492 4.492 8 H 0.106 0.894 9 C 0.160 3.840 10 N -0.281 5.281 11 C -0.080 4.080 12 C 0.091 3.909 13 O -0.195 6.195 14 C 0.115 3.885 15 C -0.210 4.210 16 C -0.081 4.081 17 C -0.101 4.101 18 Cl -0.041 7.041 19 C -0.083 4.083 20 C -0.093 4.093 21 Cl -0.014 7.014 22 N -0.228 5.228 23 N -0.277 5.277 24 H 0.258 0.742 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.167 0.833 29 H 0.158 0.842 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.235 -8.188 -2.511 14.127 hybrid contribution 1.062 0.751 0.040 1.301 sum -10.173 -7.437 -2.470 12.841 Atomic orbital electron populations 1.69960 1.07153 1.28652 1.28944 1.25836 0.94910 1.00790 0.93013 0.86210 0.79840 0.79868 0.79832 1.18905 1.20075 1.18927 1.18375 0.93947 0.87331 1.49547 0.89449 1.20947 0.87519 0.85606 0.89968 1.71277 1.11386 1.13645 1.31837 1.22865 0.92718 0.90869 1.01506 1.20604 0.90270 0.99589 0.80404 1.86316 1.26003 1.76685 1.30446 1.18854 0.85608 0.91845 0.92211 1.21269 0.95097 1.05798 0.98828 1.20899 0.94961 0.96440 0.95752 1.20495 0.88230 1.07065 0.94287 1.98358 1.22787 1.85499 1.97447 1.20675 0.91017 0.97307 0.99297 1.20002 0.93585 1.08483 0.87214 1.98393 1.69656 1.92668 1.40707 1.77596 0.94000 1.16074 1.35141 1.48023 1.07105 1.04711 1.67868 0.74190 0.90993 0.90776 0.89704 0.83301 0.84179 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.89 11.93 55.56 0.66 -18.23 16 2 C 0.08 2.01 5.50 -17.29 -0.10 1.92 16 3 Si 0.92 17.84 29.56 -169.99 -5.03 12.81 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.45 -11.49 9.47 -38.02 -0.36 -11.85 16 8 H 0.09 2.01 7.85 -52.48 -0.41 1.60 16 9 C 0.41 10.97 7.70 -155.87 -1.20 9.77 16 10 N -0.54 -15.06 9.40 -10.11 -0.10 -15.15 16 11 C 0.20 5.03 7.71 -157.16 -1.21 3.81 16 12 C 0.17 3.21 5.36 36.01 0.19 3.41 16 13 O -0.28 -5.51 9.58 -19.59 -0.19 -5.69 16 14 C 0.16 2.57 6.68 -39.21 -0.26 2.31 16 15 C -0.19 -2.40 9.04 -39.45 -0.36 -2.75 16 16 C -0.06 -0.67 9.82 -39.56 -0.39 -1.06 16 17 C -0.07 -0.83 6.32 -39.49 -0.25 -1.08 16 18 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 19 C -0.06 -0.77 9.61 -39.53 -0.38 -1.15 16 20 C -0.07 -0.95 6.33 -39.37 -0.25 -1.20 16 21 Cl -0.04 -0.67 28.50 -51.86 -1.48 -2.15 16 22 N -0.39 -9.68 12.80 32.36 0.41 -9.26 16 23 N -0.56 -13.50 7.58 31.11 0.24 -13.26 16 24 H 0.42 8.51 8.96 -182.33 -1.63 6.87 16 25 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 26 H 0.07 1.19 7.65 -51.93 -0.40 0.80 16 27 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 28 H 0.15 1.62 6.30 -52.48 -0.33 1.29 16 29 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 306.02 15.07 4.61 4.61 Total: -1.00 -30.77 306.02 -10.07 -40.85 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.15 Total: 5.56 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -4.56 Total: 2.12 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 1.22 Total: -55.91 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.19 Total: -5.69 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -2.98 Total: -4.35 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.77 -10.07 -40.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003470270.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.632 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds