Wall clock time and date at job start Tue Mar 31 2020 04:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48497 * 109.46998 * 240.00378 * 3 2 1 5 5 H 1.48502 * 109.46852 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46879 * 120.00169 * 3 2 1 7 7 C 1.40268 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.40374 * 119.99906 * 359.97438 * 7 2 1 10 10 N 1.33064 * 126.31644 * 0.02648 * 9 7 2 11 11 C 1.32234 * 109.79556 * 179.97438 * 10 9 7 12 12 C 1.50701 * 125.15210 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47343 * 90.00083 * 12 11 10 14 14 C 1.35951 * 116.99948 * 179.97438 * 13 12 11 15 15 C 1.38690 * 120.04851 * 359.73076 * 14 13 12 16 16 C 1.38152 * 119.96843 * 179.67367 * 15 14 13 17 17 C 1.38377 * 120.06379 * 0.62223 * 16 15 14 18 18 Cl 1.73604 * 119.95282 * 179.70149 * 17 16 15 19 19 C 1.38347 * 120.09244 * 359.67474 * 17 16 15 20 20 C 1.38258 * 120.02722 * 359.97438 * 19 17 16 21 21 Cl 1.73601 * 120.02917 * 179.97438 * 20 19 17 22 22 N 1.31395 * 109.68727 * 0.02562 * 11 10 9 23 23 N 1.37027 * 126.31140 * 180.02562 * 9 7 2 24 24 H 0.96997 * 127.01721 * 0.02562 * 23 9 7 25 25 H 0.97008 * 119.99864 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46772 * 210.00236 * 12 11 10 27 27 H 1.08996 * 109.47295 * 329.99316 * 12 11 10 28 28 H 1.08006 * 120.01329 * 359.96762 * 15 14 13 29 29 H 1.08006 * 119.96475 * 180.31824 * 16 15 14 30 30 H 1.07993 * 119.98409 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2754 2.7465 0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0878 -1.2148 -0.0001 9 6 1.3058 -2.4304 -0.0005 10 7 -0.0168 -2.5768 -0.0006 11 6 -0.3250 -3.8627 -0.0011 12 6 -1.7255 -4.4192 -0.0019 13 8 -2.1677 -4.5946 -1.3493 14 6 -3.4200 -5.0928 -1.5280 15 6 -4.2041 -5.4111 -0.4292 16 6 -5.4789 -5.9109 -0.6127 17 6 -5.9695 -6.1063 -1.8918 18 17 -7.5689 -6.7417 -2.1190 19 6 -5.1872 -5.7953 -2.9897 20 6 -3.9136 -5.2882 -2.8105 21 17 -2.9318 -4.8986 -4.1882 22 7 0.7748 -4.5815 -0.0009 23 7 1.8563 -3.6853 -0.0005 24 1 2.8001 -3.9089 -0.0002 25 1 -0.4850 0.8401 0.0004 26 1 -1.7347 -5.3806 0.5117 27 1 -2.3920 -3.7265 0.5120 28 1 -3.8200 -5.2640 0.5694 29 1 -6.0914 -6.1540 0.2430 30 1 -5.5720 -5.9481 -3.9872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003470270.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:12 Heat of formation + Delta-G solvation = 32.678546 kcal Electronic energy + Delta-G solvation = -19996.291706 eV Core-core repulsion = 16458.481773 eV Total energy + Delta-G solvation = -3537.809932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 313.013 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.86537 -41.22090 -38.87287 -37.65295 -37.07418 -35.58944 -33.28389 -32.09143 -31.66150 -30.82378 -28.77038 -27.50926 -24.13821 -23.49322 -22.65557 -20.97070 -19.56908 -19.13757 -18.13042 -17.75738 -17.38933 -16.93693 -16.36468 -15.94729 -15.46288 -15.21758 -15.11023 -14.88755 -14.55637 -13.76360 -13.59194 -13.45244 -13.34297 -12.89026 -12.76513 -12.53654 -12.51074 -12.17636 -11.95268 -11.90427 -11.86653 -11.64296 -11.30195 -10.43095 -10.08820 -9.94744 -9.91943 -9.22021 -8.51988 -6.76186 -0.06562 0.01241 0.85583 1.02709 1.29577 1.45917 1.52333 1.59897 2.00862 2.21444 2.35499 2.56814 2.79961 3.43681 3.52132 3.67701 3.82509 3.95510 3.99121 4.17105 4.21904 4.55206 4.62335 4.83938 4.99670 5.01585 5.20657 5.33839 5.58906 5.97750 6.14735 6.24789 6.34675 6.74622 7.20827 8.12092 8.42719 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.003019 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.801016 B = 9273.022781 C = 9361.496425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.036 3.964 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.472 4.472 8 H 0.105 0.895 9 C 0.380 3.620 10 N -0.582 5.582 11 C 0.193 3.807 12 C 0.175 3.825 13 O -0.316 6.316 14 C 0.132 3.868 15 C -0.185 4.185 16 C -0.052 4.052 17 C -0.070 4.070 18 Cl -0.051 7.051 19 C -0.060 4.060 20 C -0.080 4.080 21 Cl -0.063 7.063 22 N -0.403 5.403 23 N -0.556 5.556 24 H 0.429 0.571 25 H 0.286 0.714 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -7.698 -1.644 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.514 4.514 8 H 0.123 0.877 9 C 0.132 3.868 10 N -0.320 5.320 11 C -0.090 4.090 12 C 0.098 3.902 13 O -0.227 6.227 14 C 0.085 3.915 15 C -0.204 4.204 16 C -0.070 4.070 17 C -0.097 4.097 18 Cl -0.023 7.023 19 C -0.080 4.080 20 C -0.107 4.107 21 Cl -0.034 7.034 22 N -0.240 5.240 23 N -0.277 5.277 24 H 0.274 0.726 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.183 0.817 29 H 0.190 0.810 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.243 -8.119 -1.931 14.817 hybrid contribution 1.226 0.604 -0.155 1.375 sum -11.017 -7.515 -2.086 13.498 Atomic orbital electron populations 1.70071 1.09130 1.30156 1.29489 1.26929 0.95709 1.04451 0.91711 0.84959 0.78283 0.74388 0.80210 1.18250 1.19442 1.17804 1.18934 0.95070 0.87689 1.49679 0.87669 1.21392 0.88052 0.86717 0.90680 1.71244 1.12201 1.15388 1.33197 1.23793 0.94915 0.90156 1.00148 1.20630 0.87590 1.00872 0.81107 1.86223 1.28249 1.78154 1.30114 1.19155 0.84995 0.93787 0.93556 1.21481 0.95352 1.04975 0.98623 1.21247 0.94356 0.94758 0.96667 1.20655 0.88808 1.05944 0.94271 1.98374 1.21335 1.85125 1.97419 1.20851 0.90013 0.96487 1.00610 1.20205 0.94377 1.09729 0.86426 1.98379 1.70433 1.92954 1.41615 1.77508 0.94339 1.16579 1.35617 1.47953 1.07804 1.04110 1.67859 0.72638 0.90376 0.88014 0.88853 0.81682 0.80980 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.47 11.93 21.88 0.26 -40.21 16 2 C 0.04 1.75 5.50 85.36 0.47 2.22 16 3 Si 1.00 35.96 29.56 68.60 2.03 37.98 16 4 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 5 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 7 C -0.47 -24.28 9.47 23.28 0.22 -24.06 16 8 H 0.11 4.80 7.85 -2.91 -0.02 4.78 16 9 C 0.38 20.87 7.70 133.83 1.03 21.91 16 10 N -0.58 -33.08 9.40 -185.90 -1.75 -34.83 16 11 C 0.19 9.73 7.71 138.74 1.07 10.80 16 12 C 0.17 6.69 5.36 71.24 0.38 7.08 16 13 O -0.32 -12.42 9.58 -92.99 -0.89 -13.31 16 14 C 0.13 4.11 6.68 22.51 0.15 4.26 16 15 C -0.19 -4.32 9.04 22.36 0.20 -4.12 16 16 C -0.05 -0.97 9.82 22.28 0.22 -0.75 16 17 C -0.07 -1.39 6.32 22.33 0.14 -1.25 16 18 Cl -0.05 -0.88 28.95 -2.72 -0.08 -0.95 16 19 C -0.06 -1.37 9.61 22.30 0.21 -1.15 16 20 C -0.08 -2.32 6.33 22.41 0.14 -2.18 16 21 Cl -0.06 -1.99 28.50 -2.72 -0.08 -2.07 16 22 N -0.40 -20.31 12.80 -51.54 -0.66 -20.97 16 23 N -0.56 -27.41 7.58 -55.50 -0.42 -27.83 16 24 H 0.43 17.82 8.96 -213.09 -1.91 15.91 16 25 H 0.29 13.64 8.29 -92.70 -0.77 12.87 16 26 H 0.10 3.20 7.65 -2.38 -0.02 3.18 16 27 H 0.09 3.30 7.68 -2.39 -0.02 3.28 16 28 H 0.17 3.23 6.30 -2.91 -0.02 3.21 16 29 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -67.87 306.02 1.97 -65.89 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.68 Total: 23.55 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 4.24 Total: 12.75 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -2.57 Total: -123.83 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.89 Total: -13.31 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.98 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -0.16 Total: -3.03 kcal Total: -67.87 1.97 -65.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003470270.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.573 kcal (2) G-P(sol) polarization free energy of solvation -67.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds