Wall clock time and date at job start Tue Mar 31 2020 04:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38246 * 120.04262 * 2 1 4 4 Cl 1.73603 * 119.97567 * 359.97263 * 3 2 1 5 5 C 1.38383 * 120.04464 * 180.25235 * 3 2 1 6 6 C 1.38282 * 120.12897 * 359.44735 * 5 3 2 7 7 C 1.38098 * 120.08398 * 0.54999 * 6 5 3 8 8 C 1.38834 * 120.04134 * 179.97438 * 2 1 3 9 9 N 1.39890 * 120.06911 * 0.04406 * 8 2 1 10 10 C 1.34775 * 120.00270 * 224.39315 * 9 8 2 11 11 S 1.71195 * 119.99998 * 5.48238 * 10 9 8 12 12 N 1.34778 * 119.99818 * 185.48546 * 10 9 8 13 13 N 1.40099 * 120.00232 * 359.97438 * 12 10 9 14 14 C 1.34777 * 120.00247 * 180.02562 * 13 12 10 15 15 O 1.21682 * 119.99616 * 359.97438 * 14 13 12 16 16 C 1.46372 * 120.00159 * 180.02562 * 14 13 12 17 17 H 1.08007 * 119.99883 * 359.97438 * 16 14 13 18 18 C 1.40050 * 120.00152 * 179.97438 * 16 14 13 19 19 N 1.30675 * 119.99788 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00001 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47193 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47250 * 119.99952 * 20 18 16 23 23 H 1.48507 * 109.46613 * 239.99906 * 20 18 16 24 24 H 1.08995 * 109.47371 * 90.00403 * 1 2 3 25 25 H 1.09000 * 109.46867 * 210.00342 * 1 2 3 26 26 H 1.09003 * 109.46992 * 330.00031 * 1 2 3 27 27 H 1.07994 * 119.93408 * 179.71861 * 5 3 2 28 28 H 1.07998 * 119.95704 * 180.27374 * 6 5 3 29 29 H 1.08005 * 120.02042 * 179.70441 * 7 6 5 30 30 H 0.97004 * 119.99771 * 44.38850 * 9 8 2 31 31 H 0.96998 * 119.99761 * 180.02562 * 12 10 9 32 32 H 0.96999 * 119.99975 * 0.02562 * 13 12 10 33 33 H 0.96995 * 119.99493 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3316 2.7005 -0.0007 5 6 3.5829 1.1968 -0.0053 6 6 4.2771 0.0009 0.0010 7 6 3.5912 -1.1977 0.0010 8 6 2.2020 -1.2018 0.0005 9 7 1.5049 -2.4147 0.0001 10 6 1.8916 -3.4145 0.8170 11 16 3.1449 -3.1548 1.9539 12 7 1.2916 -4.6188 0.7387 13 7 0.2656 -4.8312 -0.1913 14 6 -0.3348 -6.0354 -0.2692 15 8 0.0147 -6.9382 0.4679 16 6 -1.4063 -6.2574 -1.2413 17 1 -1.7162 -5.4561 -1.8959 18 6 -2.0298 -7.5088 -1.3226 19 7 -1.6546 -8.4784 -0.5310 20 14 -3.3969 -7.7924 -2.5637 21 1 -3.6314 -6.5455 -3.3353 22 1 -3.0044 -8.8830 -3.4919 23 1 -4.6420 -8.1739 -1.8500 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 4.1218 2.1327 -0.0099 28 1 5.3571 0.0042 0.0013 29 1 4.1344 -2.1312 0.0011 30 1 0.7431 -2.5360 -0.5880 31 1 1.5696 -5.3383 1.3269 32 1 -0.0127 -4.1116 -0.7792 33 1 -2.0861 -9.3452 -0.5876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004322446.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:11 Heat of formation + Delta-G solvation = 33.658773 kcal Electronic energy + Delta-G solvation = -20508.912083 eV Core-core repulsion = 17109.021458 eV Total energy + Delta-G solvation = -3399.890626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.039 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53393 -38.97578 -37.24605 -36.45429 -34.79091 -32.99762 -32.81196 -31.21958 -29.55816 -27.07977 -26.73126 -24.14672 -22.40507 -21.83781 -20.88165 -19.51382 -18.27424 -17.49305 -16.56472 -16.11384 -15.79563 -15.63338 -15.32875 -14.67276 -14.52748 -14.22636 -14.16921 -13.51846 -12.98620 -12.96252 -12.67913 -12.60878 -11.89647 -11.73691 -11.67699 -11.60631 -11.34877 -11.09478 -11.02530 -10.94937 -10.62577 -10.55700 -9.30212 -9.03852 -8.81170 -8.40423 -8.10905 -7.36559 -7.16263 -6.68106 -5.19136 0.84843 1.11211 1.60925 1.80642 1.96628 2.55614 2.77543 2.88553 2.98889 3.02570 3.52075 3.81081 4.06294 4.55139 4.72387 4.87045 4.91310 5.21552 5.22203 5.27358 5.39358 5.44132 5.49976 5.89721 6.00965 6.07734 6.13726 6.32963 6.52506 6.62305 6.89043 6.98152 7.33682 7.66667 7.81726 8.48902 8.63570 9.91050 10.21632 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.003293 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.437568 B = 8499.961741 C = 9674.625706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.034 4.034 4 Cl -0.071 7.071 5 C -0.106 4.106 6 C -0.106 4.106 7 C -0.062 4.062 8 C 0.155 3.845 9 N -0.640 5.640 10 C 0.552 3.448 11 S -0.640 6.640 12 N -0.432 5.432 13 N -0.580 5.580 14 C 0.548 3.452 15 O -0.562 6.562 16 C -0.527 4.527 17 H 0.079 0.921 18 C 0.086 3.914 19 N -0.754 5.754 20 Si 0.923 3.077 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.272 1.272 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.147 0.853 30 H 0.405 0.595 31 H 0.458 0.542 32 H 0.402 0.598 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 17.255 -4.316 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 C -0.061 4.061 4 Cl -0.042 7.042 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.084 4.084 8 C 0.061 3.939 9 N -0.270 5.270 10 C 0.187 3.813 11 S -0.513 6.513 12 N -0.150 5.150 13 N -0.335 5.335 14 C 0.355 3.645 15 O -0.441 6.441 16 C -0.565 4.565 17 H 0.097 0.903 18 C -0.137 4.137 19 N -0.381 5.381 20 Si 0.746 3.254 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.197 1.197 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.165 0.835 30 H 0.244 0.756 31 H 0.307 0.693 32 H 0.241 0.759 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.550 16.506 -3.067 17.394 hybrid contribution -1.784 -0.194 -1.345 2.243 sum 2.766 16.311 -4.413 17.122 Atomic orbital electron populations 1.20855 0.90155 1.03997 1.02958 1.19443 0.96615 0.90274 1.02385 1.20352 0.92124 0.85975 1.07669 1.98348 1.77087 1.31752 1.97043 1.21035 0.91688 0.99298 1.00531 1.20886 1.00256 0.90808 1.00686 1.21448 0.92323 1.00116 0.94525 1.16926 0.90971 0.82522 1.03496 1.41942 1.33271 1.11502 1.40321 1.22289 0.89831 0.81170 0.87972 1.93433 1.29642 1.88775 1.39459 1.44790 1.27978 1.10370 1.31837 1.46919 1.33382 1.17375 1.35839 1.18886 0.82311 0.78009 0.85287 1.90691 1.66216 1.41053 1.46100 1.20692 1.17584 0.98740 1.19445 0.90306 1.25769 0.97204 0.95012 0.95742 1.69982 1.34900 1.02401 1.30773 0.86055 0.79943 0.79388 0.80004 1.18438 1.19716 1.19719 0.90458 0.91268 0.90198 0.84977 0.84630 0.83496 0.75558 0.69269 0.75937 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.16 36.01 0.33 -0.90 16 2 C -0.08 -0.97 5.90 -104.40 -0.62 -1.58 16 3 C -0.03 -0.37 6.31 -39.52 -0.25 -0.62 16 4 Cl -0.07 -0.70 27.29 -51.86 -1.42 -2.12 16 5 C -0.11 -1.06 9.83 -39.51 -0.39 -1.45 16 6 C -0.11 -1.12 10.04 -39.62 -0.40 -1.52 16 7 C -0.06 -0.79 7.88 -39.38 -0.31 -1.10 16 8 C 0.16 1.99 5.81 -83.71 -0.49 1.51 16 9 N -0.64 -8.45 4.45 -11.41 -0.05 -8.50 16 10 C 0.55 9.03 7.74 -86.92 -0.67 8.36 16 11 S -0.64 -12.08 26.84 -107.50 -2.88 -14.97 16 12 N -0.43 -7.73 6.26 29.96 0.19 -7.54 16 13 N -0.58 -10.79 6.25 30.19 0.19 -10.60 16 14 C 0.55 13.35 7.86 -12.99 -0.10 13.25 16 15 O -0.56 -16.01 14.86 5.20 0.08 -15.93 16 16 C -0.53 -12.63 9.54 -35.63 -0.34 -12.97 16 17 H 0.08 1.66 7.85 -52.48 -0.41 1.25 16 18 C 0.09 2.08 5.50 -17.36 -0.10 1.98 16 19 N -0.75 -20.11 11.83 55.55 0.66 -19.45 16 20 Si 0.92 17.58 29.56 -169.99 -5.02 12.55 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.72 7.34 -51.93 -0.38 0.34 16 26 H 0.08 0.77 6.90 -51.93 -0.36 0.41 16 27 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.15 2.06 6.53 -52.48 -0.34 1.72 16 30 H 0.40 4.53 6.26 -40.82 -0.26 4.28 16 31 H 0.46 8.93 7.98 -182.60 -1.46 7.47 16 32 H 0.40 6.02 6.70 -182.60 -1.22 4.80 16 33 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -30.87 316.32 -11.66 -42.53 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -4.83 Total: 14.30 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -3.33 Total: 4.96 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.98 Total: -46.09 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.08 Total: -15.93 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.02 Total: 12.55 kcal Atomic # 16 Polarization: -12.08 SS G_CDS: -2.88 Total: -14.97 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.42 Total: -2.12 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.87 -11.66 -42.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004322446.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.184 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds