Wall clock time and date at job start Tue Mar 31 2020 04:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38246 * 120.04262 * 2 1 4 4 Cl 1.73603 * 119.97567 * 359.97263 * 3 2 1 5 5 C 1.38383 * 120.04464 * 180.25235 * 3 2 1 6 6 C 1.38282 * 120.12897 * 359.44735 * 5 3 2 7 7 C 1.38098 * 120.08398 * 0.54999 * 6 5 3 8 8 C 1.38834 * 120.04134 * 179.97438 * 2 1 3 9 9 N 1.39890 * 120.06911 * 0.04406 * 8 2 1 10 10 C 1.34775 * 120.00270 * 224.39315 * 9 8 2 11 11 S 1.71195 * 119.99998 * 5.48238 * 10 9 8 12 12 N 1.34778 * 119.99818 * 185.48546 * 10 9 8 13 13 N 1.40099 * 120.00232 * 359.97438 * 12 10 9 14 14 C 1.34777 * 120.00247 * 180.02562 * 13 12 10 15 15 O 1.21682 * 119.99616 * 359.97438 * 14 13 12 16 16 C 1.46372 * 120.00159 * 180.02562 * 14 13 12 17 17 H 1.08007 * 119.99883 * 359.97438 * 16 14 13 18 18 C 1.40050 * 120.00152 * 179.97438 * 16 14 13 19 19 N 1.30675 * 119.99788 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 120.00001 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47193 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47250 * 119.99952 * 20 18 16 23 23 H 1.48507 * 109.46613 * 239.99906 * 20 18 16 24 24 H 1.08995 * 109.47371 * 90.00403 * 1 2 3 25 25 H 1.09000 * 109.46867 * 210.00342 * 1 2 3 26 26 H 1.09003 * 109.46992 * 330.00031 * 1 2 3 27 27 H 1.07994 * 119.93408 * 179.71861 * 5 3 2 28 28 H 1.07998 * 119.95704 * 180.27374 * 6 5 3 29 29 H 1.08005 * 120.02042 * 179.70441 * 7 6 5 30 30 H 0.97004 * 119.99771 * 44.38850 * 9 8 2 31 31 H 0.96998 * 119.99761 * 180.02562 * 12 10 9 32 32 H 0.96999 * 119.99975 * 0.02562 * 13 12 10 33 33 H 0.96995 * 119.99493 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3316 2.7005 -0.0007 5 6 3.5829 1.1968 -0.0053 6 6 4.2771 0.0009 0.0010 7 6 3.5912 -1.1977 0.0010 8 6 2.2020 -1.2018 0.0005 9 7 1.5049 -2.4147 0.0001 10 6 1.8916 -3.4145 0.8170 11 16 3.1449 -3.1548 1.9539 12 7 1.2916 -4.6188 0.7387 13 7 0.2656 -4.8312 -0.1913 14 6 -0.3348 -6.0354 -0.2692 15 8 0.0147 -6.9382 0.4679 16 6 -1.4063 -6.2574 -1.2413 17 1 -1.7162 -5.4561 -1.8959 18 6 -2.0298 -7.5088 -1.3226 19 7 -1.6546 -8.4784 -0.5310 20 14 -3.3969 -7.7924 -2.5637 21 1 -3.6314 -6.5455 -3.3353 22 1 -3.0044 -8.8830 -3.4919 23 1 -4.6420 -8.1739 -1.8500 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 4.1218 2.1327 -0.0099 28 1 5.3571 0.0042 0.0013 29 1 4.1344 -2.1312 0.0011 30 1 0.7431 -2.5360 -0.5880 31 1 1.5696 -5.3383 1.3269 32 1 -0.0127 -4.1116 -0.7792 33 1 -2.0861 -9.3452 -0.5876 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004322446.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:10 Heat of formation + Delta-G solvation = 15.083034 kcal Electronic energy + Delta-G solvation = -20509.717588 eV Core-core repulsion = 17109.021458 eV Total energy + Delta-G solvation = -3400.696130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.039 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67204 -40.34617 -38.68829 -37.44141 -36.11262 -34.78086 -33.81294 -32.74476 -30.58058 -28.56419 -27.89025 -25.42112 -23.71428 -22.80977 -22.32359 -20.90091 -19.65249 -18.94727 -18.02556 -17.29283 -17.22995 -16.75990 -16.62683 -15.96462 -15.83229 -15.51069 -15.19736 -14.76331 -14.52848 -14.32317 -13.51585 -13.39829 -13.36666 -13.01428 -12.87205 -12.80501 -12.65512 -12.52379 -12.42511 -12.01152 -11.91790 -11.74066 -11.06034 -10.34667 -10.30751 -9.73157 -9.34089 -8.92284 -8.59829 -8.46642 -7.07751 -0.26195 0.22011 0.27120 0.51432 1.07523 1.13252 1.39705 1.44799 1.59090 1.61736 2.22097 2.26116 2.61999 3.37513 3.51743 3.71958 3.88021 4.02402 4.23384 4.37570 4.59775 4.63632 4.65632 4.78080 5.06123 5.12049 5.19061 5.19761 5.28505 5.42164 5.52186 5.71240 5.90128 6.05365 6.24384 6.66446 6.93940 8.08640 8.44873 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.003293 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.437568 B = 8499.961741 C = 9674.625706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 C -0.043 4.043 4 Cl -0.059 7.059 5 C -0.097 4.097 6 C -0.105 4.105 7 C -0.076 4.076 8 C 0.129 3.871 9 N -0.618 5.618 10 C 0.571 3.429 11 S -0.682 6.682 12 N -0.442 5.442 13 N -0.563 5.563 14 C 0.538 3.462 15 O -0.612 6.612 16 C -0.546 4.546 17 H 0.108 0.892 18 C 0.032 3.968 19 N -0.810 5.810 20 Si 1.006 2.994 21 H -0.239 1.239 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.130 0.870 30 H 0.416 0.584 31 H 0.450 0.550 32 H 0.421 0.579 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 19.717 -6.112 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 C -0.070 4.070 4 Cl -0.030 7.030 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.098 4.098 8 C 0.035 3.965 9 N -0.248 5.248 10 C 0.206 3.794 11 S -0.556 6.556 12 N -0.160 5.160 13 N -0.319 5.319 14 C 0.346 3.654 15 O -0.496 6.496 16 C -0.583 4.583 17 H 0.126 0.874 18 C -0.186 4.186 19 N -0.438 5.438 20 Si 0.824 3.176 21 H -0.162 1.162 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.176 0.824 28 H 0.177 0.823 29 H 0.148 0.852 30 H 0.258 0.742 31 H 0.297 0.703 32 H 0.263 0.737 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.668 19.101 -4.910 20.060 hybrid contribution -1.416 -0.752 -0.785 1.785 sum 2.252 18.349 -5.695 19.344 Atomic orbital electron populations 1.20912 0.89079 1.03865 1.04148 1.19596 0.97476 0.89979 1.01628 1.20530 0.92722 0.86277 1.07491 1.98356 1.76910 1.30805 1.96968 1.21367 0.91505 1.00148 0.98583 1.21160 1.01490 0.90126 0.99645 1.21439 0.92431 1.00422 0.95506 1.17101 0.91214 0.82464 1.05690 1.41875 1.32983 1.10967 1.38946 1.21973 0.88752 0.81129 0.87589 1.93496 1.31497 1.89157 1.41413 1.44685 1.28401 1.10734 1.32166 1.46182 1.33049 1.16699 1.35929 1.19156 0.82656 0.78641 0.84993 1.90656 1.67781 1.43280 1.47880 1.21293 1.17468 0.99872 1.19681 0.87375 1.27019 0.99657 0.94461 0.97460 1.70140 1.37042 1.03314 1.33349 0.84827 0.75843 0.79918 0.76971 1.16157 1.19616 1.19617 0.88560 0.91941 0.89766 0.82359 0.82328 0.85248 0.74215 0.70262 0.73664 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.16 71.24 0.65 -1.54 16 2 C -0.08 -1.77 5.90 -19.72 -0.12 -1.89 16 3 C -0.04 -0.83 6.31 22.31 0.14 -0.69 16 4 Cl -0.06 -1.02 27.29 -2.72 -0.07 -1.09 16 5 C -0.10 -1.68 9.83 22.31 0.22 -1.46 16 6 C -0.10 -2.00 10.04 22.25 0.22 -1.77 16 7 C -0.08 -1.89 7.88 22.40 0.18 -1.71 16 8 C 0.13 3.16 5.81 38.16 0.22 3.39 16 9 N -0.62 -15.77 4.45 -190.00 -0.85 -16.61 16 10 C 0.57 18.70 7.74 179.05 1.39 20.09 16 11 S -0.68 -26.10 26.84 -56.49 -1.52 -27.61 16 12 N -0.44 -16.04 6.26 -59.12 -0.37 -16.41 16 13 N -0.56 -20.86 6.25 -176.63 -1.10 -21.96 16 14 C 0.54 26.57 7.86 86.36 0.68 27.25 16 15 O -0.61 -36.19 14.86 -4.29 -0.06 -36.25 16 16 C -0.55 -25.84 9.54 24.83 0.24 -25.60 16 17 H 0.11 4.29 7.85 -2.91 -0.02 4.27 16 18 C 0.03 1.53 5.50 85.30 0.47 2.00 16 19 N -0.81 -44.28 11.83 21.84 0.26 -44.02 16 20 Si 1.01 35.13 29.56 68.60 2.03 37.16 16 21 H -0.24 -7.43 7.11 99.48 0.71 -6.72 16 22 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 23 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.19 7.34 -2.39 -0.02 1.17 16 26 H 0.08 1.43 6.90 -2.39 -0.02 1.41 16 27 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.13 3.66 6.53 -2.91 -0.02 3.64 16 30 H 0.42 8.68 6.26 -92.71 -0.58 8.10 16 31 H 0.45 18.26 7.98 -213.32 -1.70 16.56 16 32 H 0.42 12.06 6.70 -213.32 -1.43 10.63 16 33 H 0.28 13.91 8.29 -92.71 -0.77 13.14 16 Total: -1.00 -68.56 316.32 0.10 -68.46 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -2.50 Total: 40.30 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 4.29 Total: 18.06 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -2.06 Total: -99.01 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.06 Total: -36.25 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Atomic # 16 Polarization: -26.10 SS G_CDS: -1.52 Total: -27.61 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.07 Total: -1.09 kcal Total: -68.56 0.10 -68.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004322446.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.542 kcal (2) G-P(sol) polarization free energy of solvation -68.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds