Wall clock time and date at job start Tue Mar 31 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31976 * 120.39253 * 2 1 4 4 N 1.28703 * 120.56984 * 180.02562 * 3 2 1 5 5 C 1.32756 * 121.41379 * 359.97438 * 4 3 2 6 6 S 1.76205 * 119.62337 * 180.02562 * 5 4 3 7 7 C 1.81000 * 99.99879 * 359.97438 * 6 5 4 8 8 C 1.50705 * 109.46974 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99886 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99818 * 180.02562 * 8 7 6 11 11 N 1.40103 * 120.00021 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00021 * 179.97438 * 11 10 8 13 13 O 1.21682 * 119.99980 * 359.97438 * 12 11 10 14 14 C 1.46381 * 119.99778 * 179.97438 * 12 11 10 15 15 H 1.08004 * 119.99915 * 353.93488 * 14 12 11 16 16 C 1.40040 * 119.99973 * 173.94033 * 14 12 11 17 17 N 1.30675 * 119.99858 * 6.15000 * 16 14 12 18 18 Si 1.86794 * 120.00306 * 186.14729 * 16 14 12 19 19 H 1.48504 * 109.46954 * 94.98425 * 18 16 14 20 20 H 1.48498 * 109.47489 * 214.98274 * 18 16 14 21 21 H 1.48497 * 109.47109 * 334.98766 * 18 16 14 22 22 N 1.32755 * 120.75347 * 0.02562 * 5 4 3 23 23 C 1.32856 * 119.36078 * 359.97438 * 22 5 4 24 24 O 1.35514 * 120.65846 * 179.97438 * 23 22 5 25 25 H 1.08999 * 109.47101 * 269.97490 * 1 2 3 26 26 H 1.08995 * 109.47077 * 29.97832 * 1 2 3 27 27 H 1.09005 * 109.47226 * 149.97887 * 1 2 3 28 28 H 1.08998 * 109.47373 * 300.00159 * 7 6 5 29 29 H 1.09000 * 109.46810 * 60.00523 * 7 6 5 30 30 H 0.97004 * 120.00218 * 359.97438 * 10 8 7 31 31 H 0.97005 * 119.99748 * 0.02562 * 11 10 8 32 32 H 0.97009 * 119.99916 * 180.02562 * 17 16 14 33 33 H 0.96703 * 114.00316 * 90.00541 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1747 1.1384 0.0000 4 7 3.4617 1.1424 -0.0005 5 6 4.1572 0.0116 -0.0005 6 16 5.9182 0.0721 -0.0005 7 6 6.1710 1.8643 -0.0013 8 6 7.6482 2.1632 -0.0008 9 8 8.4508 1.2540 -0.0004 10 7 8.0771 3.4408 -0.0007 11 7 9.4503 3.7187 -0.0007 12 6 9.8793 4.9964 -0.0012 13 8 9.0740 5.9086 -0.0020 14 6 11.3140 5.2867 -0.0007 15 1 12.0277 4.4822 0.0989 16 6 11.7612 6.6075 -0.1292 17 7 10.9012 7.5914 -0.1286 18 14 13.5869 6.9630 -0.3013 19 1 13.9351 7.0793 -1.7402 20 1 13.9108 8.2363 0.3908 21 1 14.3664 5.8560 0.3087 22 7 3.5410 -1.1643 -0.0005 23 6 2.2130 -1.2039 0.0000 24 8 1.5570 -2.3896 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 5.7130 2.2955 -0.8914 29 1 5.7131 2.2962 0.8886 30 1 7.4351 4.1680 -0.0013 31 1 10.0923 2.9915 -0.0012 32 1 11.2110 8.5064 -0.2180 33 1 1.3668 -2.7344 0.8827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008685895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:38 Heat of formation + Delta-G solvation = -4.344943 kcal Electronic energy + Delta-G solvation = -21814.674463 eV Core-core repulsion = 18004.719459 eV Total energy + Delta-G solvation = -3809.955004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.068 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22675 -39.47045 -38.57450 -37.23357 -35.28913 -34.25709 -33.63353 -32.61501 -31.34890 -29.47286 -28.67546 -26.10427 -25.63995 -24.39205 -21.11099 -20.60397 -20.17930 -19.62337 -18.20684 -17.50032 -16.89579 -16.55937 -16.23776 -15.73664 -15.59554 -15.25649 -15.17558 -14.27285 -13.86503 -13.83018 -13.73173 -13.30947 -13.25607 -12.97930 -12.66549 -12.61476 -12.48629 -11.98653 -11.69799 -11.43051 -11.18081 -11.01599 -10.68957 -10.58189 -10.40100 -10.23402 -9.93642 -9.70119 -9.00208 -8.15168 -8.01548 -7.26519 -6.42501 -4.86458 -0.13166 0.15098 0.63114 1.62416 2.49943 2.68849 2.80860 2.83083 3.06662 3.14901 3.19714 3.44763 3.67325 4.01960 4.08808 4.35107 4.36893 4.48584 4.87002 4.89923 4.99111 5.18557 5.20529 5.51441 5.51969 5.55905 6.17875 6.61749 7.14407 7.26075 7.63495 7.83638 7.86444 8.10812 8.63957 8.80794 9.14433 10.31495 10.50588 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.042064 B = 0.002202 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.486237 B =12709.975234 C =13347.705048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.007 4.007 3 N -0.160 5.160 4 N -0.291 5.291 5 C 0.230 3.770 6 S 0.136 5.864 7 C -0.153 4.153 8 C 0.516 3.484 9 O -0.548 6.548 10 N -0.498 5.498 11 N -0.559 5.559 12 C 0.554 3.446 13 O -0.579 6.579 14 C -0.531 4.531 15 H 0.077 0.923 16 C 0.087 3.913 17 N -0.762 5.762 18 Si 0.918 3.082 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.474 5.474 23 C 0.358 3.642 24 O -0.462 6.462 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.428 0.572 31 H 0.415 0.585 32 H 0.273 0.727 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.980 -15.884 1.759 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.162 4.162 3 N -0.011 5.011 4 N -0.144 5.144 5 C -0.146 4.146 6 S 0.369 5.631 7 C -0.306 4.306 8 C 0.298 3.702 9 O -0.427 6.427 10 N -0.239 5.239 11 N -0.313 5.313 12 C 0.360 3.640 13 O -0.460 6.460 14 C -0.569 4.569 15 H 0.095 0.905 16 C -0.134 4.134 17 N -0.390 5.390 18 Si 0.742 3.258 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.207 5.207 23 C 0.156 3.844 24 O -0.269 6.269 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.269 0.731 31 H 0.254 0.746 32 H 0.083 0.917 33 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -17.576 -15.554 1.166 23.499 hybrid contribution -0.719 0.244 0.336 0.830 sum -18.295 -15.311 1.501 23.903 Atomic orbital electron populations 1.20613 0.85721 1.04965 1.03976 1.23785 1.00847 0.90448 1.01144 1.73415 1.00743 1.23733 1.03244 1.74164 1.00947 1.24138 1.15195 1.27185 1.04865 0.87301 0.95214 1.86799 0.84795 1.04007 1.87457 1.23749 0.98340 0.98468 1.10084 1.19373 0.88639 0.82649 0.79571 1.90731 1.55331 1.44201 1.52409 1.44461 1.00901 1.06993 1.71538 1.46011 0.91567 1.10228 1.83539 1.18687 0.90309 0.78070 0.76967 1.90621 1.56039 1.43465 1.55899 1.20684 0.88746 0.93629 1.53824 0.90498 1.25726 0.99691 0.95493 0.92499 1.70013 1.35307 0.99902 1.33759 0.86175 0.81998 0.78591 0.79021 1.19571 1.20275 1.18592 1.68617 1.09785 1.28210 1.14117 1.20034 0.87428 0.86912 0.90073 1.84708 1.73850 1.33728 1.34631 0.89527 0.89378 0.89306 0.85220 0.85199 0.73107 0.74568 0.91666 0.72400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.01 36.01 0.36 -0.08 16 2 C -0.01 -0.06 6.89 -82.04 -0.57 -0.62 16 3 N -0.16 -1.89 11.54 33.78 0.39 -1.50 16 4 N -0.29 -3.76 10.32 30.22 0.31 -3.45 16 5 C 0.23 2.93 7.92 -90.49 -0.72 2.22 16 6 S 0.14 1.77 21.40 -107.50 -2.30 -0.53 16 7 C -0.15 -1.93 5.31 36.01 0.19 -1.74 16 8 C 0.52 8.63 7.96 -10.98 -0.09 8.54 16 9 O -0.55 -10.65 15.70 5.56 0.09 -10.57 16 10 N -0.50 -9.44 6.26 31.22 0.20 -9.24 16 11 N -0.56 -12.63 6.25 30.19 0.19 -12.44 16 12 C 0.55 15.04 7.86 -12.99 -0.10 14.94 16 13 O -0.58 -17.50 14.88 5.21 0.08 -17.42 16 14 C -0.53 -14.30 9.53 -35.63 -0.34 -14.64 16 15 H 0.08 1.90 7.85 -52.48 -0.41 1.48 16 16 C 0.09 2.31 5.49 -17.37 -0.10 2.22 16 17 N -0.76 -21.69 11.85 55.55 0.66 -21.03 16 18 Si 0.92 19.28 29.56 -169.99 -5.03 14.25 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 N -0.47 -5.73 10.54 -13.34 -0.14 -5.87 16 23 C 0.36 3.31 7.81 -16.62 -0.13 3.19 16 24 O -0.46 -2.74 12.73 -18.24 -0.23 -2.98 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.30 7.61 -51.93 -0.40 -0.10 16 28 H 0.13 1.45 8.12 -51.92 -0.42 1.03 16 29 H 0.13 1.43 8.12 -51.92 -0.42 1.01 16 30 H 0.43 7.72 8.00 -182.59 -1.46 6.26 16 31 H 0.41 8.87 7.98 -182.59 -1.46 7.41 16 32 H 0.27 7.00 8.29 -40.82 -0.34 6.67 16 33 H 0.41 0.19 9.06 45.56 0.41 0.61 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -36.55 322.47 -6.55 -43.10 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.13 Total: 8.79 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -1.48 Total: 14.02 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 1.60 Total: -53.53 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.07 Total: -30.96 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.30 Total: -0.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.55 -6.55 -43.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008685895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.757 kcal (2) G-P(sol) polarization free energy of solvation -36.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds