Wall clock time and date at job start Tue Mar 31 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31976 * 120.39253 * 2 1 4 4 N 1.28703 * 120.56984 * 180.02562 * 3 2 1 5 5 C 1.32756 * 121.41379 * 359.97438 * 4 3 2 6 6 S 1.76205 * 119.62337 * 180.02562 * 5 4 3 7 7 C 1.81000 * 99.99879 * 359.97438 * 6 5 4 8 8 C 1.50705 * 109.46974 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99886 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99818 * 180.02562 * 8 7 6 11 11 N 1.40103 * 120.00021 * 180.02562 * 10 8 7 12 12 C 1.34775 * 120.00021 * 179.97438 * 11 10 8 13 13 O 1.21682 * 119.99980 * 359.97438 * 12 11 10 14 14 C 1.46381 * 119.99778 * 179.97438 * 12 11 10 15 15 H 1.08004 * 119.99915 * 353.93488 * 14 12 11 16 16 C 1.40040 * 119.99973 * 173.94033 * 14 12 11 17 17 N 1.30675 * 119.99858 * 6.15000 * 16 14 12 18 18 Si 1.86794 * 120.00306 * 186.14729 * 16 14 12 19 19 H 1.48504 * 109.46954 * 94.98425 * 18 16 14 20 20 H 1.48498 * 109.47489 * 214.98274 * 18 16 14 21 21 H 1.48497 * 109.47109 * 334.98766 * 18 16 14 22 22 N 1.32755 * 120.75347 * 0.02562 * 5 4 3 23 23 C 1.32856 * 119.36078 * 359.97438 * 22 5 4 24 24 O 1.35514 * 120.65846 * 179.97438 * 23 22 5 25 25 H 1.08999 * 109.47101 * 269.97490 * 1 2 3 26 26 H 1.08995 * 109.47077 * 29.97832 * 1 2 3 27 27 H 1.09005 * 109.47226 * 149.97887 * 1 2 3 28 28 H 1.08998 * 109.47373 * 300.00159 * 7 6 5 29 29 H 1.09000 * 109.46810 * 60.00523 * 7 6 5 30 30 H 0.97004 * 120.00218 * 359.97438 * 10 8 7 31 31 H 0.97005 * 119.99748 * 0.02562 * 11 10 8 32 32 H 0.97009 * 119.99916 * 180.02562 * 17 16 14 33 33 H 0.96703 * 114.00316 * 90.00541 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1747 1.1384 0.0000 4 7 3.4617 1.1424 -0.0005 5 6 4.1572 0.0116 -0.0005 6 16 5.9182 0.0721 -0.0005 7 6 6.1710 1.8643 -0.0013 8 6 7.6482 2.1632 -0.0008 9 8 8.4508 1.2540 -0.0004 10 7 8.0771 3.4408 -0.0007 11 7 9.4503 3.7187 -0.0007 12 6 9.8793 4.9964 -0.0012 13 8 9.0740 5.9086 -0.0020 14 6 11.3140 5.2867 -0.0007 15 1 12.0277 4.4822 0.0989 16 6 11.7612 6.6075 -0.1292 17 7 10.9012 7.5914 -0.1286 18 14 13.5869 6.9630 -0.3013 19 1 13.9351 7.0793 -1.7402 20 1 13.9108 8.2363 0.3908 21 1 14.3664 5.8560 0.3087 22 7 3.5410 -1.1643 -0.0005 23 6 2.2130 -1.2039 0.0000 24 8 1.5570 -2.3896 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 5.7130 2.2955 -0.8914 29 1 5.7131 2.2962 0.8886 30 1 7.4351 4.1680 -0.0013 31 1 10.0923 2.9915 -0.0012 32 1 11.2110 8.5064 -0.2180 33 1 1.3668 -2.7344 0.8827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008685895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:38 Heat of formation + Delta-G solvation = -37.761326 kcal Electronic energy + Delta-G solvation = -21816.123506 eV Core-core repulsion = 18004.719459 eV Total energy + Delta-G solvation = -3811.404047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.068 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.01727 -41.02375 -39.17259 -39.16311 -36.10002 -36.00061 -34.64930 -34.33043 -32.85988 -30.63671 -29.68222 -28.03082 -26.42265 -25.10056 -22.72585 -22.36411 -20.89515 -20.48974 -19.55211 -18.77329 -18.40472 -17.96927 -17.46023 -17.07647 -16.86958 -16.40741 -15.93917 -15.80202 -15.21759 -15.07901 -15.00208 -14.54246 -14.32134 -13.90926 -13.84461 -13.48628 -13.37297 -13.29587 -12.87791 -12.76810 -12.70052 -12.42648 -12.03313 -12.00635 -11.96958 -11.41882 -11.30001 -10.96734 -10.50664 -10.14397 -9.16837 -9.02264 -8.41370 -6.95535 -0.89110 -0.64439 -0.35309 0.62007 1.27850 1.28650 1.44176 1.46487 1.61666 1.81742 2.02674 2.27044 2.37751 2.72203 2.90079 3.11679 3.48603 3.52263 3.63313 3.87414 3.88887 4.21939 4.36210 4.69888 4.80761 5.18828 5.26787 5.42284 5.43097 5.91567 6.04017 6.26152 6.28493 6.76271 7.04637 7.06007 7.22926 8.29633 8.54165 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.042064 B = 0.002202 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.486237 B =12709.975234 C =13347.705048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.007 3.993 3 N -0.190 5.190 4 N -0.310 5.310 5 C 0.224 3.776 6 S 0.115 5.885 7 C -0.138 4.138 8 C 0.525 3.475 9 O -0.571 6.571 10 N -0.503 5.503 11 N -0.557 5.557 12 C 0.543 3.457 13 O -0.619 6.619 14 C -0.559 4.559 15 H 0.094 0.906 16 C 0.033 3.967 17 N -0.812 5.812 18 Si 1.004 2.996 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.249 1.249 22 N -0.498 5.498 23 C 0.369 3.631 24 O -0.456 6.456 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.431 0.569 31 H 0.420 0.580 32 H 0.280 0.720 33 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.909 -17.191 1.854 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 N -0.039 5.039 4 N -0.161 5.161 5 C -0.152 4.152 6 S 0.347 5.653 7 C -0.291 4.291 8 C 0.309 3.691 9 O -0.451 6.451 10 N -0.246 5.246 11 N -0.309 5.309 12 C 0.349 3.651 13 O -0.504 6.504 14 C -0.597 4.597 15 H 0.112 0.888 16 C -0.183 4.183 17 N -0.441 5.441 18 Si 0.823 3.177 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.172 1.172 22 N -0.232 5.232 23 C 0.165 3.835 24 O -0.267 6.267 25 H 0.129 0.871 26 H 0.107 0.893 27 H 0.126 0.874 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.273 0.727 31 H 0.261 0.739 32 H 0.090 0.910 33 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -18.545 -16.920 1.285 25.137 hybrid contribution -0.702 0.425 0.325 0.882 sum -19.247 -16.495 1.609 25.399 Atomic orbital electron populations 1.20824 0.82523 1.05935 1.05774 1.24430 1.02644 0.89499 0.98374 1.73367 1.00408 1.25253 1.04899 1.74097 1.01736 1.24321 1.15982 1.26911 1.04275 0.87733 0.96298 1.86796 0.86151 1.03863 1.88488 1.23614 0.94834 0.98811 1.11830 1.19997 0.90199 0.81287 0.77587 1.90721 1.56653 1.44759 1.52991 1.44608 0.99098 1.08080 1.72800 1.45496 0.93746 1.09171 1.82485 1.18903 0.90631 0.78825 0.76778 1.90576 1.57021 1.45043 1.57805 1.21226 0.89316 0.94885 1.54229 0.88836 1.26951 1.05386 0.94834 0.91176 1.70143 1.38349 1.00733 1.34828 0.84905 0.74693 0.78810 0.79341 1.18717 1.19496 1.17202 1.68589 1.11329 1.28122 1.15146 1.20204 0.86672 0.88152 0.88432 1.84683 1.72999 1.32277 1.36777 0.87056 0.89286 0.87384 0.83544 0.83327 0.72700 0.73922 0.91020 0.69394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.01 71.24 0.71 0.15 16 2 C 0.01 0.11 6.89 42.86 0.30 0.41 16 3 N -0.19 -4.26 11.54 -47.03 -0.54 -4.80 16 4 N -0.31 -7.80 10.32 -58.29 -0.60 -8.41 16 5 C 0.22 5.61 7.92 180.30 1.43 7.03 16 6 S 0.11 2.96 21.40 -56.49 -1.21 1.76 16 7 C -0.14 -3.43 5.31 71.24 0.38 -3.05 16 8 C 0.52 17.57 7.96 87.66 0.70 18.27 16 9 O -0.57 -22.30 15.70 -3.02 -0.05 -22.34 16 10 N -0.50 -19.33 6.26 -173.53 -1.09 -20.41 16 11 N -0.56 -25.63 6.25 -176.63 -1.10 -26.73 16 12 C 0.54 30.23 7.86 86.36 0.68 30.91 16 13 O -0.62 -38.68 14.88 -4.29 -0.06 -38.75 16 14 C -0.56 -30.43 9.53 24.83 0.24 -30.20 16 15 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 16 C 0.03 1.77 5.49 85.30 0.47 2.24 16 17 N -0.81 -47.13 11.85 21.83 0.26 -46.87 16 18 Si 1.00 39.19 29.56 68.60 2.03 41.22 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 21 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 22 N -0.50 -11.51 10.54 -308.77 -3.25 -14.77 16 23 C 0.37 6.04 7.81 84.86 0.66 6.70 16 24 O -0.46 -4.00 12.73 -88.17 -1.12 -5.12 16 25 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.11 0.30 7.61 -2.38 -0.02 0.28 16 28 H 0.15 3.19 8.12 -2.40 -0.02 3.17 16 29 H 0.15 3.17 8.12 -2.40 -0.02 3.15 16 30 H 0.43 15.90 8.00 -213.31 -1.71 14.20 16 31 H 0.42 18.24 7.98 -213.31 -1.70 16.54 16 32 H 0.28 14.61 8.29 -92.70 -0.77 13.85 16 33 H 0.44 -1.14 9.06 -74.06 -0.67 -1.82 16 Total: -1.00 -80.97 322.47 -4.03 -85.00 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -2.85 Total: 27.76 kcal Atomic # 6 Polarization: 26.91 SS G_CDS: 5.56 Total: 32.46 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.33 Total: -121.99 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -1.23 Total: -66.21 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.21 Total: 1.76 kcal Total: -80.97 -4.03 -85.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008685895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.239 kcal (2) G-P(sol) polarization free energy of solvation -80.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds