Wall clock time and date at job start Tue Mar 31 2020 04:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31717 * 1 3 3 Si 1.86807 * 120.00067 * 2 1 4 4 H 1.48504 * 109.46905 * 269.99981 * 3 2 1 5 5 H 1.48500 * 109.46698 * 29.99728 * 3 2 1 6 6 H 1.48490 * 109.47365 * 149.99930 * 3 2 1 7 7 C 1.38538 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99913 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00441 * 180.02562 * 7 2 1 10 10 C 1.76203 * 100.00088 * 179.97438 * 9 7 2 11 11 N 1.30214 * 126.08807 * 359.97243 * 10 9 7 12 12 N 1.26107 * 117.71979 * 180.02562 * 11 10 9 13 13 C 1.30250 * 117.71062 * 0.02562 * 12 11 10 14 14 N 1.38665 * 126.09698 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99589 * 0.04528 * 14 13 12 16 16 C 1.53000 * 109.46716 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46812 * 179.97438 * 16 15 14 18 18 C 1.33380 * 125.20374 * 89.99651 * 17 16 15 19 19 C 1.38430 * 114.92371 * 179.97438 * 18 17 16 20 20 C 1.33392 * 114.91695 * 359.97438 * 19 18 17 21 21 S 1.75883 * 125.20081 * 269.69160 * 17 16 15 22 22 S 1.76479 * 107.81397 * 359.97438 * 13 12 11 23 23 H 0.96999 * 120.00402 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00113 * 180.02562 * 14 13 12 25 25 H 1.08998 * 109.46707 * 299.99343 * 15 14 13 26 26 H 1.08992 * 109.47586 * 59.99559 * 15 14 13 27 27 H 1.08998 * 109.46881 * 299.99095 * 16 15 14 28 28 H 1.08992 * 109.47569 * 59.99407 * 16 15 14 29 29 H 1.08000 * 122.54283 * 359.95392 * 18 17 16 30 30 H 1.07998 * 122.54342 * 180.02562 * 19 18 17 31 31 H 1.07993 * 125.20434 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2512 1.6178 0.0000 4 1 2.4987 2.0464 -1.4001 5 1 1.4486 2.6527 0.7000 6 1 3.5487 1.4403 0.7000 7 6 2.0100 -1.1997 0.0005 8 1 1.4700 -2.1351 0.0014 9 16 3.7720 -1.1997 0.0012 10 6 4.0780 -2.9350 0.0025 11 7 3.1749 -3.8731 0.0033 12 7 3.5723 -5.0699 0.0047 13 6 4.8575 -5.2813 0.0057 14 7 5.4818 -6.5195 0.0078 15 6 4.6785 -7.7447 0.0080 16 6 5.6053 -8.9620 0.0110 17 6 4.7791 -10.2224 0.0119 18 6 4.3589 -10.8671 -1.0776 19 6 3.6123 -12.0061 -0.8298 20 6 3.4267 -12.2866 0.4610 21 16 4.2278 -11.0723 1.4496 22 16 5.6630 -3.7110 0.0040 23 1 -0.4851 0.8400 -0.0004 24 1 6.4502 -6.5744 0.0088 25 1 4.0486 -7.7659 0.8972 26 1 4.0507 -7.7678 -0.8827 27 1 6.2356 -8.9410 -0.8780 28 1 6.2328 -8.9387 0.9019 29 1 4.5838 -10.5261 -2.0773 30 1 3.2112 -12.6215 -1.6215 31 1 2.8727 -13.1322 0.8410 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014020955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:51 Heat of formation + Delta-G solvation = 91.691405 kcal Electronic energy + Delta-G solvation = -17225.558168 eV Core-core repulsion = 14272.980604 eV Total energy + Delta-G solvation = -2952.577565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 313.007 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.95841 -38.37524 -36.49582 -32.80568 -32.67485 -29.69476 -27.94323 -25.85917 -25.27756 -24.16738 -22.62161 -20.03851 -19.58614 -19.10667 -17.68069 -17.48553 -16.66187 -15.82185 -15.65436 -15.38091 -15.17704 -14.52754 -14.18411 -13.36692 -13.17093 -13.12243 -12.85463 -12.73664 -12.54719 -12.12331 -11.77820 -11.75497 -11.29020 -11.19154 -11.01402 -10.63920 -10.21823 -9.76588 -9.58807 -9.46099 -9.08639 -8.96905 -8.94229 -8.74061 -8.17846 -6.93570 -6.47359 -4.23986 0.68619 1.17862 1.27710 1.35211 1.72379 1.84054 2.45419 2.52713 3.11607 3.18859 3.22994 3.41268 3.45837 4.05148 4.39326 4.49663 4.68104 4.72747 4.81402 4.91860 5.11092 5.28909 5.34824 5.46170 5.62703 5.77230 5.86197 5.96914 6.00479 6.19890 6.96192 7.34032 7.78310 8.58388 8.90759 9.53462 10.61168 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.002487 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.475081 B =11257.327216 C =11893.510180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.100 3.900 3 Si 0.844 3.156 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.237 1.237 7 C -0.525 4.525 8 H 0.122 0.878 9 S 0.090 5.910 10 C 0.014 3.986 11 N -0.248 5.248 12 N -0.317 5.317 13 C 0.260 3.740 14 N -0.697 5.697 15 C 0.144 3.856 16 C -0.059 4.059 17 C -0.171 4.171 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.215 4.215 21 S 0.103 5.897 22 S 0.006 5.994 23 H 0.276 0.724 24 H 0.410 0.590 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.709 -19.846 0.068 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.111 4.111 3 Si 0.667 3.333 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.162 1.162 7 C -0.675 4.675 8 H 0.140 0.860 9 S 0.323 5.677 10 C -0.375 4.375 11 N -0.089 5.089 12 N -0.162 5.162 13 C -0.118 4.118 14 N -0.341 5.341 15 C 0.017 3.983 16 C -0.099 4.099 17 C -0.289 4.289 18 C -0.165 4.165 19 C -0.165 4.165 20 C -0.351 4.351 21 S 0.366 5.634 22 S 0.240 5.760 23 H 0.086 0.914 24 H 0.246 0.754 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 13.922 -18.721 1.633 23.387 hybrid contribution -0.527 -0.603 -1.529 1.726 sum 13.396 -19.324 0.103 23.514 Atomic orbital electron populations 1.69953 1.05732 1.28084 1.45343 1.24737 0.94665 0.98558 0.93167 0.86986 0.81783 0.84149 0.80345 1.18530 1.18822 1.16186 1.22682 0.86904 0.99564 1.58375 0.86026 1.82874 1.12123 0.88557 1.84109 1.31209 0.89909 1.07147 1.09185 1.71375 1.26594 0.92236 1.18673 1.71114 1.08687 1.13692 1.22744 1.26440 0.91443 0.90190 1.03695 1.43343 1.07664 0.99912 1.83177 1.21308 0.93071 0.80767 1.03161 1.20288 0.96559 0.89016 1.04051 1.24207 1.06908 1.01857 0.95966 1.20174 1.00659 0.96230 0.99442 1.20184 1.01304 0.98498 0.96467 1.25646 1.08004 1.04507 0.96915 1.84397 1.49910 1.19579 1.09489 1.85222 1.11884 1.00318 1.78568 0.91371 0.75366 0.91372 0.91164 0.89174 0.89993 0.84145 0.84251 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 13.97 55.48 0.78 -24.25 16 2 C 0.10 2.78 5.49 -17.49 -0.10 2.69 16 3 Si 0.84 19.36 27.73 -169.99 -4.71 14.65 16 4 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.26 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.24 -5.16 6.73 56.52 0.38 -4.78 16 7 C -0.53 -14.91 9.90 30.84 0.31 -14.61 16 8 H 0.12 3.86 7.14 -52.48 -0.37 3.48 16 9 S 0.09 2.12 19.85 -107.50 -2.13 -0.01 16 10 C 0.01 0.32 7.82 52.08 0.41 0.72 16 11 N -0.25 -6.14 10.36 31.30 0.32 -5.82 16 12 N -0.32 -6.93 11.23 30.99 0.35 -6.58 16 13 C 0.26 4.54 8.50 -87.17 -0.74 3.80 16 14 N -0.70 -8.59 5.72 -60.65 -0.35 -8.94 16 15 C 0.14 1.61 5.99 -4.04 -0.02 1.59 16 16 C -0.06 -0.46 5.82 -27.88 -0.16 -0.63 16 17 C -0.17 -1.52 5.76 -36.00 -0.21 -1.73 16 18 C -0.13 -1.15 10.05 -41.21 -0.41 -1.57 16 19 C -0.13 -1.08 10.18 -41.20 -0.42 -1.50 16 20 C -0.22 -1.72 11.23 29.04 0.33 -1.39 16 21 S 0.10 0.90 23.33 -107.50 -2.51 -1.61 16 22 S 0.01 0.11 23.53 -107.50 -2.53 -2.42 16 23 H 0.28 7.37 8.32 -40.82 -0.34 7.03 16 24 H 0.41 3.70 8.60 -40.82 -0.35 3.35 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -32.06 318.22 -9.86 -41.91 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -2.84 Total: 0.90 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.03 Total: -12.63 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 1.10 Total: -45.59 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -7.17 Total: -4.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.06 -9.86 -41.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014020955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.605 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds