Wall clock time and date at job start Tue Mar 31 2020 04:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31717 * 1 3 3 Si 1.86807 * 120.00067 * 2 1 4 4 H 1.48504 * 109.46905 * 269.99981 * 3 2 1 5 5 H 1.48500 * 109.46698 * 29.99728 * 3 2 1 6 6 H 1.48490 * 109.47365 * 149.99930 * 3 2 1 7 7 C 1.38538 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99913 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00441 * 180.02562 * 7 2 1 10 10 C 1.76203 * 100.00088 * 179.97438 * 9 7 2 11 11 N 1.30214 * 126.08807 * 359.97243 * 10 9 7 12 12 N 1.26107 * 117.71979 * 180.02562 * 11 10 9 13 13 C 1.30250 * 117.71062 * 0.02562 * 12 11 10 14 14 N 1.38665 * 126.09698 * 179.97438 * 13 12 11 15 15 C 1.46505 * 119.99589 * 0.04528 * 14 13 12 16 16 C 1.53000 * 109.46716 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46812 * 179.97438 * 16 15 14 18 18 C 1.33380 * 125.20374 * 89.99651 * 17 16 15 19 19 C 1.38430 * 114.92371 * 179.97438 * 18 17 16 20 20 C 1.33392 * 114.91695 * 359.97438 * 19 18 17 21 21 S 1.75883 * 125.20081 * 269.69160 * 17 16 15 22 22 S 1.76479 * 107.81397 * 359.97438 * 13 12 11 23 23 H 0.96999 * 120.00402 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00113 * 180.02562 * 14 13 12 25 25 H 1.08998 * 109.46707 * 299.99343 * 15 14 13 26 26 H 1.08992 * 109.47586 * 59.99559 * 15 14 13 27 27 H 1.08998 * 109.46881 * 299.99095 * 16 15 14 28 28 H 1.08992 * 109.47569 * 59.99407 * 16 15 14 29 29 H 1.08000 * 122.54283 * 359.95392 * 18 17 16 30 30 H 1.07998 * 122.54342 * 180.02562 * 19 18 17 31 31 H 1.07993 * 125.20434 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2512 1.6178 0.0000 4 1 2.4987 2.0464 -1.4001 5 1 1.4486 2.6527 0.7000 6 1 3.5487 1.4403 0.7000 7 6 2.0100 -1.1997 0.0005 8 1 1.4700 -2.1351 0.0014 9 16 3.7720 -1.1997 0.0012 10 6 4.0780 -2.9350 0.0025 11 7 3.1749 -3.8731 0.0033 12 7 3.5723 -5.0699 0.0047 13 6 4.8575 -5.2813 0.0057 14 7 5.4818 -6.5195 0.0078 15 6 4.6785 -7.7447 0.0080 16 6 5.6053 -8.9620 0.0110 17 6 4.7791 -10.2224 0.0119 18 6 4.3589 -10.8671 -1.0776 19 6 3.6123 -12.0061 -0.8298 20 6 3.4267 -12.2866 0.4610 21 16 4.2278 -11.0723 1.4496 22 16 5.6630 -3.7110 0.0040 23 1 -0.4851 0.8400 -0.0004 24 1 6.4502 -6.5744 0.0088 25 1 4.0486 -7.7659 0.8972 26 1 4.0507 -7.7678 -0.8827 27 1 6.2356 -8.9410 -0.8780 28 1 6.2328 -8.9387 0.9019 29 1 4.5838 -10.5261 -2.0773 30 1 3.2112 -12.6215 -1.6215 31 1 2.8727 -13.1322 0.8410 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014020955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:51 Heat of formation + Delta-G solvation = 70.583072 kcal Electronic energy + Delta-G solvation = -17226.473494 eV Core-core repulsion = 14272.980604 eV Total energy + Delta-G solvation = -2953.492891 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 313.007 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61857 -39.07043 -37.59010 -34.76406 -33.73946 -31.15218 -28.88798 -27.96976 -26.59928 -25.17370 -23.39258 -21.57280 -20.77411 -20.16153 -19.46408 -18.63385 -17.74037 -17.21712 -16.91185 -16.83700 -16.39279 -15.68622 -15.57500 -15.00775 -14.39903 -14.09459 -13.85450 -13.70574 -13.56351 -13.27424 -13.11676 -13.06924 -12.87027 -12.58711 -12.00399 -11.92906 -11.61849 -11.52951 -11.30879 -11.19936 -10.79383 -10.76865 -9.65581 -9.60864 -9.40418 -8.67390 -8.54449 -6.33597 -0.36656 -0.28714 0.05475 0.22440 0.70677 0.81406 1.08774 1.32834 1.39409 1.50596 1.79620 1.81892 2.16166 2.19014 2.38299 2.83609 3.76011 3.87508 3.99876 4.10656 4.23492 4.25830 4.43658 4.64807 4.70974 4.86115 4.94261 5.22219 5.37566 5.58270 5.62054 5.71954 6.30386 6.34898 6.81828 7.90346 8.59331 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.002487 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.475081 B =11257.327216 C =11893.510180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.045 3.955 3 Si 0.912 3.088 4 H -0.250 1.250 5 H -0.253 1.253 6 H -0.216 1.216 7 C -0.552 4.552 8 H 0.069 0.931 9 S 0.102 5.898 10 C -0.030 4.030 11 N -0.281 5.281 12 N -0.365 5.365 13 C 0.276 3.724 14 N -0.668 5.668 15 C 0.143 3.857 16 C -0.047 4.047 17 C -0.185 4.185 18 C -0.140 4.140 19 C -0.145 4.145 20 C -0.217 4.217 21 S 0.078 5.922 22 S 0.107 5.893 23 H 0.281 0.719 24 H 0.431 0.569 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.251 -20.759 -0.248 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.162 4.162 3 Si 0.731 3.269 4 H -0.174 1.174 5 H -0.177 1.177 6 H -0.139 1.139 7 C -0.701 4.701 8 H 0.087 0.913 9 S 0.334 5.666 10 C -0.421 4.421 11 N -0.121 5.121 12 N -0.211 5.211 13 C -0.102 4.102 14 N -0.312 5.312 15 C 0.016 3.984 16 C -0.086 4.086 17 C -0.303 4.303 18 C -0.171 4.171 19 C -0.175 4.175 20 C -0.352 4.352 21 S 0.342 5.658 22 S 0.341 5.659 23 H 0.091 0.909 24 H 0.272 0.728 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.171 0.829 30 H 0.176 0.824 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 17.528 -19.735 1.319 26.428 hybrid contribution -1.484 -0.793 -1.448 2.220 sum 16.044 -20.529 -0.129 26.055 Atomic orbital electron populations 1.70079 1.07900 1.29558 1.47177 1.25789 0.95566 1.02671 0.92139 0.85965 0.81169 0.78580 0.81223 1.17365 1.17663 1.13907 1.22644 0.90206 0.97982 1.59282 0.91308 1.82194 1.07619 0.90054 1.86775 1.31247 0.93265 1.06779 1.10778 1.71382 1.29134 0.93583 1.18023 1.71092 1.10831 1.12652 1.26563 1.26893 0.91121 0.92446 0.99753 1.43602 1.08937 0.98568 1.80094 1.21392 0.93726 0.81417 1.01824 1.20226 0.95815 0.86582 1.05995 1.24343 1.07665 1.02407 0.95848 1.20467 1.00258 0.96296 1.00044 1.20482 1.01272 0.98711 0.97051 1.25946 1.07743 1.04692 0.96824 1.84464 1.50547 1.20465 1.10358 1.84754 1.06617 0.97618 1.76876 0.90887 0.72786 0.93028 0.92332 0.86820 0.88438 0.82860 0.82445 0.80115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.80 13.97 21.60 0.30 -55.50 16 2 C 0.04 2.58 5.49 84.78 0.47 3.05 16 3 Si 0.91 40.19 27.73 68.60 1.90 42.09 16 4 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.22 -8.68 6.73 99.48 0.67 -8.01 16 7 C -0.55 -32.88 9.90 67.89 0.67 -32.21 16 8 H 0.07 4.71 7.14 -2.91 -0.02 4.69 16 9 S 0.10 4.86 19.85 -56.49 -1.12 3.74 16 10 C -0.03 -1.37 7.82 130.48 1.02 -0.35 16 11 N -0.28 -14.32 10.36 -54.89 -0.57 -14.89 16 12 N -0.36 -15.96 11.23 -55.87 -0.63 -16.59 16 13 C 0.28 9.04 8.50 179.14 1.52 10.57 16 14 N -0.67 -14.33 5.72 -345.78 -1.98 -16.30 16 15 C 0.14 2.91 5.99 86.38 0.52 3.42 16 16 C -0.05 -0.58 5.82 29.85 0.17 -0.41 16 17 C -0.18 -2.91 5.76 24.59 0.14 -2.77 16 18 C -0.14 -2.12 10.05 21.22 0.21 -1.90 16 19 C -0.15 -2.08 10.18 21.22 0.22 -1.86 16 20 C -0.22 -3.14 11.23 66.72 0.75 -2.39 16 21 S 0.08 1.28 23.33 -56.49 -1.32 -0.03 16 22 S 0.11 3.40 23.53 -56.49 -1.33 2.07 16 23 H 0.28 15.65 8.32 -92.71 -0.77 14.88 16 24 H 0.43 5.75 8.60 -92.71 -0.80 4.95 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -75.05 318.22 1.30 -73.75 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.35 Total: 6.52 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 5.69 Total: -24.85 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -2.87 Total: -103.28 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.90 Total: 42.09 kcal Atomic # 16 Polarization: 9.55 SS G_CDS: -3.77 Total: 5.78 kcal Total: -75.05 1.30 -73.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014020955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.330 kcal (2) G-P(sol) polarization free energy of solvation -75.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds