Wall clock time and date at job start Tue Mar 31 2020 04:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46937 * 317.59140 * 3 2 1 5 5 C 1.37172 * 119.99826 * 263.78274 * 4 3 2 6 6 H 1.08000 * 119.99626 * 201.65888 * 5 4 3 7 7 C 1.38880 * 119.99921 * 21.66177 * 5 4 3 8 8 N 1.31469 * 120.00283 * 10.86273 * 7 5 4 9 9 Si 1.86800 * 119.99793 * 190.86345 * 7 5 4 10 10 H 1.48501 * 109.47048 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47007 * 120.00085 * 9 7 5 12 12 H 1.48499 * 109.47258 * 240.00012 * 9 7 5 13 13 C 1.34774 * 119.99997 * 83.78771 * 4 3 2 14 14 O 1.21593 * 119.99932 * 179.97438 * 13 4 3 15 15 N 1.34775 * 119.99923 * 359.97438 * 13 4 3 16 16 C 1.39960 * 119.99882 * 184.61365 * 15 13 4 17 17 C 1.38896 * 120.04801 * 323.60102 * 16 15 13 18 18 C 1.38104 * 119.96041 * 180.02562 * 17 16 15 19 19 C 1.38370 * 120.07356 * 359.97438 * 18 17 16 20 20 Cl 1.73604 * 119.94755 * 180.27945 * 19 18 17 21 21 C 1.38483 * 120.10815 * 0.02562 * 19 18 17 22 22 Cl 1.73601 * 119.98610 * 180.02562 * 21 19 18 23 23 C 1.38236 * 120.02852 * 359.97438 * 21 19 18 24 24 H 1.09003 * 109.46726 * 197.59210 * 3 2 1 25 25 H 1.08997 * 109.47175 * 77.59384 * 3 2 1 26 26 H 0.97002 * 120.00305 * 179.97438 * 8 7 5 27 27 H 0.96998 * 120.00442 * 4.60814 * 15 13 4 28 28 H 1.07993 * 120.01808 * 0.04440 * 17 16 15 29 29 H 1.08003 * 119.95833 * 180.02562 * 18 17 16 30 30 H 1.08003 * 120.03520 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.0190 0.9315 5 6 3.4465 -0.6681 2.2107 6 1 4.1146 -1.2976 2.7797 7 6 2.9414 0.4965 2.7740 8 7 1.9703 1.1492 2.1745 9 14 3.6418 1.1356 4.3834 10 1 4.7189 0.2261 4.8503 11 1 4.1992 2.4962 4.1751 12 1 2.5647 1.1928 5.4040 13 6 3.2029 -2.3016 0.5317 14 8 3.6090 -3.1478 1.3047 15 7 2.8588 -2.6464 -0.7250 16 6 2.8767 -3.9915 -1.1114 17 6 3.8580 -4.8431 -0.6205 18 6 3.8743 -6.1699 -1.0034 19 6 2.9138 -6.6519 -1.8750 20 17 2.9330 -8.3220 -2.3485 21 6 1.9341 -5.8054 -2.3663 22 17 0.7301 -6.4136 -3.4591 23 6 1.9137 -4.4765 -1.9859 24 1 2.9709 0.9805 0.3106 25 1 2.9715 -0.2200 -1.0036 26 1 1.6172 1.9625 2.5681 27 1 2.5988 -1.9624 -1.3617 28 1 4.6077 -4.4680 0.0604 29 1 4.6371 -6.8322 -0.6213 30 1 1.1499 -3.8161 -2.3693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016385368.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:15 Heat of formation + Delta-G solvation = 18.909169 kcal Electronic energy + Delta-G solvation = -20560.491528 eV Core-core repulsion = 17022.084511 eV Total energy + Delta-G solvation = -3538.407017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 313.013 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73209 -40.05783 -37.97124 -37.52122 -37.40529 -36.24143 -35.52245 -33.61062 -31.95960 -30.30575 -29.23561 -26.67934 -24.20503 -23.75608 -21.58508 -19.87171 -19.71536 -18.58320 -18.07786 -17.55218 -16.92657 -16.63511 -16.00099 -15.60814 -15.46594 -15.21442 -14.93519 -14.82567 -14.67558 -13.85575 -13.56737 -13.45025 -13.17457 -13.08225 -12.91374 -12.87936 -12.56276 -12.38183 -12.19776 -12.06579 -12.03446 -11.88823 -11.18187 -11.11539 -10.83388 -9.97604 -9.93005 -9.12637 -8.34686 -5.97874 -0.07022 0.06697 0.81132 1.14069 1.44611 1.49410 1.59663 1.74191 2.06900 2.24092 2.27736 2.46131 2.56540 3.08037 3.38547 3.59534 3.65184 4.05264 4.10930 4.22103 4.48604 4.60844 4.66656 4.92086 5.03347 5.17242 5.29838 5.50129 5.64533 5.81520 6.28313 6.67450 7.00281 7.11037 7.40488 7.92857 8.69194 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.003538 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.533364 B = 7912.636563 C = 8825.150296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.256 3.744 3 C 0.223 3.777 4 N -0.467 5.467 5 C -0.315 4.315 6 H 0.089 0.911 7 C 0.000 4.000 8 N -0.906 5.906 9 Si 0.991 3.009 10 H -0.269 1.269 11 H -0.267 1.267 12 H -0.293 1.293 13 C 0.661 3.339 14 O -0.624 6.624 15 N -0.681 5.681 16 C 0.187 3.813 17 C -0.116 4.116 18 C -0.073 4.073 19 C -0.060 4.060 20 Cl -0.050 7.050 21 C -0.014 4.014 22 Cl -0.045 7.045 23 C -0.134 4.134 24 H 0.135 0.865 25 H 0.130 0.870 26 H 0.272 0.728 27 H 0.416 0.584 28 H 0.140 0.860 29 H 0.164 0.836 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 -8.764 -11.737 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.062 4.062 3 C 0.096 3.904 4 N -0.191 5.191 5 C -0.443 4.443 6 H 0.106 0.894 7 C -0.200 4.200 8 N -0.546 5.546 9 Si 0.817 3.183 10 H -0.194 1.194 11 H -0.192 1.192 12 H -0.219 1.219 13 C 0.365 3.635 14 O -0.505 6.505 15 N -0.331 5.331 16 C 0.090 3.910 17 C -0.137 4.137 18 C -0.092 4.092 19 C -0.089 4.089 20 Cl -0.021 7.021 21 C -0.042 4.042 22 Cl -0.016 7.016 23 C -0.156 4.156 24 H 0.153 0.847 25 H 0.147 0.853 26 H 0.082 0.918 27 H 0.255 0.745 28 H 0.158 0.842 29 H 0.181 0.819 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.952 -9.256 -11.218 14.841 hybrid contribution 0.057 0.719 0.719 1.018 sum 3.008 -8.537 -10.499 13.863 Atomic orbital electron populations 1.80922 1.14833 1.10716 1.12402 1.29831 0.95869 0.90908 0.89579 1.19062 0.80031 0.97120 0.94149 1.42919 1.60646 1.03163 1.12353 1.19621 1.26613 1.07689 0.90342 0.89357 1.25877 0.95118 0.97212 1.01822 1.69833 1.24647 1.18896 1.41225 0.84869 0.77681 0.78437 0.77350 1.19359 1.19158 1.21944 1.16182 0.82267 0.83267 0.81806 1.90756 1.55731 1.49396 1.54664 1.42613 1.71716 1.06548 1.12190 1.17573 0.93628 0.84325 0.95477 1.21427 0.98541 0.93355 1.00363 1.21079 0.97827 0.95215 0.95058 1.20741 0.98844 0.86701 1.02579 1.98364 1.98191 1.14538 1.91015 1.20426 0.93147 0.93153 0.97464 1.98378 1.54345 1.87550 1.61345 1.20773 0.99098 0.93957 1.01778 0.84715 0.85281 0.91810 0.74521 0.84207 0.81867 0.82656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.76 18.54 20.01 0.37 -22.39 16 2 C 0.26 10.33 13.47 89.44 1.20 11.54 16 3 C 0.22 7.75 4.81 84.57 0.41 8.16 16 4 N -0.47 -19.94 2.60 -662.35 -1.72 -21.66 16 5 C -0.31 -15.25 9.31 84.01 0.78 -14.47 16 6 H 0.09 4.58 7.39 -2.91 -0.02 4.55 16 7 C 0.00 0.01 5.10 84.90 0.43 0.44 16 8 N -0.91 -42.99 9.06 21.65 0.20 -42.79 16 9 Si 0.99 38.82 29.57 68.60 2.03 40.85 16 10 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 11 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 12 H -0.29 -11.92 7.11 99.48 0.71 -11.22 16 13 C 0.66 27.46 8.00 179.06 1.43 28.90 16 14 O -0.62 -30.13 13.54 -4.01 -0.05 -30.19 16 15 N -0.68 -21.52 5.21 -317.16 -1.65 -23.18 16 16 C 0.19 5.58 6.28 38.14 0.24 5.82 16 17 C -0.12 -3.45 8.69 22.40 0.19 -3.25 16 18 C -0.07 -1.78 9.82 22.27 0.22 -1.57 16 19 C -0.06 -1.47 6.32 22.36 0.14 -1.32 16 20 Cl -0.05 -1.08 27.95 -2.72 -0.08 -1.16 16 21 C -0.01 -0.34 6.32 22.33 0.14 -0.20 16 22 Cl -0.05 -1.02 27.95 -2.72 -0.08 -1.09 16 23 C -0.13 -3.46 9.75 22.41 0.22 -3.24 16 24 H 0.14 4.92 6.39 -2.39 -0.02 4.90 16 25 H 0.13 2.99 6.64 -2.39 -0.02 2.98 16 26 H 0.27 12.63 8.31 -92.71 -0.77 11.86 16 27 H 0.42 10.47 6.58 -92.71 -0.61 9.86 16 28 H 0.14 4.72 6.32 -2.91 -0.02 4.71 16 29 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -60.52 301.35 5.05 -55.47 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.62 Total: 15.34 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: 5.41 Total: 30.80 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -2.81 Total: -110.02 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.19 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.15 Total: -2.26 kcal Total: -60.52 5.05 -55.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016385368.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.377 kcal (2) G-P(sol) polarization free energy of solvation -60.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds