Wall clock time and date at job start Tue Mar 31 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34956 * 125.63962 * 2 1 4 4 C 1.35482 * 108.98914 * 179.97438 * 3 2 1 5 5 S 1.76205 * 126.07764 * 179.97438 * 4 3 2 6 6 O 1.42103 * 106.39933 * 203.53826 * 5 4 3 7 7 O 1.42091 * 106.40200 * 336.46274 * 5 4 3 8 8 N 1.65597 * 107.21731 * 90.00415 * 5 4 3 9 9 C 1.36939 * 120.00455 * 89.99768 * 8 5 4 10 10 H 1.07997 * 119.99368 * 7.24551 * 9 8 5 11 11 C 1.38816 * 120.00029 * 187.24554 * 9 8 5 12 12 N 1.31614 * 120.00452 * 25.59996 * 11 9 8 13 13 Si 1.86802 * 119.99687 * 205.59874 * 11 9 8 14 14 H 1.48506 * 109.47284 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47049 * 119.99659 * 13 11 9 16 16 H 1.48492 * 109.47081 * 240.00108 * 13 11 9 17 17 C 1.46506 * 120.00102 * 269.99952 * 8 5 4 18 18 C 1.47202 * 109.47357 * 93.31975 * 17 8 5 19 19 N 4.44582 * 104.78255 * 55.44866 * 2 1 3 20 20 C 1.39796 * 107.84224 * 0.02562 * 4 3 2 21 21 C 1.37702 * 125.63539 * 179.69526 * 2 1 3 22 22 C 1.46498 * 126.26087 * 0.02562 * 21 2 1 23 23 O 1.21622 * 119.99516 * 180.02562 * 22 21 2 24 24 O 1.34888 * 120.00013 * 359.97438 * 22 21 2 25 25 H 1.09008 * 109.46930 * 90.02529 * 1 2 3 26 26 H 1.09000 * 109.46978 * 330.02783 * 1 2 3 27 27 H 1.09003 * 109.47310 * 210.02134 * 1 2 3 28 28 H 1.07998 * 125.50246 * 0.02693 * 3 2 1 29 29 H 0.96993 * 120.00589 * 180.02562 * 12 11 9 30 30 H 1.08994 * 109.47440 * 213.32818 * 17 8 5 31 31 H 1.09006 * 109.46704 * 333.32344 * 17 8 5 32 32 H 1.08006 * 126.51552 * 179.97438 * 20 4 3 33 33 H 0.96704 * 117.00047 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0968 0.0000 4 6 3.5494 0.7086 0.0006 5 16 4.9515 1.7757 0.0002 6 8 6.0278 1.0237 -0.5435 7 8 4.5142 3.0127 -0.5451 8 7 5.3413 2.0735 1.5818 9 6 6.2206 1.2530 2.2366 10 1 6.7488 0.4839 1.6927 11 6 6.4329 1.4097 3.5995 12 7 5.4971 1.9454 4.3541 13 14 8.0471 0.8604 4.3624 14 1 8.9263 0.2951 3.3075 15 1 8.7181 2.0252 4.9934 16 1 7.7805 -0.1753 5.3926 17 6 4.7454 3.2149 2.2807 18 6 3.5332 2.7766 2.9917 19 7 2.5993 2.4380 3.5405 20 6 3.5784 -0.6891 0.0004 21 6 2.2673 -1.1191 0.0060 22 6 1.8120 -2.5116 0.0128 23 8 2.6243 -3.4168 0.0182 24 8 0.4921 -2.7896 0.0143 25 1 -0.3633 -0.0005 -1.0278 26 1 -0.3633 0.8902 0.5134 27 1 -0.3634 -0.8898 0.5142 28 1 1.9023 2.1188 0.0004 29 1 5.6455 2.0553 5.3062 30 1 5.4617 3.6166 2.9973 31 1 4.4831 3.9871 1.5574 32 1 4.4596 -1.3136 0.0003 33 1 0.2401 -3.7233 0.0185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020213529.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:06 Heat of formation + Delta-G solvation = -65.756088 kcal Electronic energy + Delta-G solvation = -24315.176178 eV Core-core repulsion = 20470.265436 eV Total energy + Delta-G solvation = -3844.910742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29443 -39.52116 -36.68708 -36.13940 -35.96371 -34.58936 -34.45938 -32.83921 -31.66980 -29.58915 -27.47771 -26.61375 -24.09624 -23.92649 -21.08037 -19.88401 -18.76324 -18.40441 -17.76689 -17.50063 -16.67877 -16.15146 -15.95394 -15.43637 -14.83945 -14.82369 -14.63095 -14.43476 -13.80162 -13.64167 -13.13348 -13.00172 -12.49513 -12.39609 -12.32284 -12.10583 -11.78995 -11.61139 -11.48464 -11.38674 -11.06754 -10.92054 -10.85988 -10.78752 -10.54501 -10.32389 -10.19412 -10.05941 -9.67225 -8.82893 -8.42989 -8.25840 -6.69129 -4.04451 1.34549 1.57766 2.48308 2.75573 3.08369 3.08917 3.18444 3.21366 3.27311 3.75377 4.00356 4.13197 4.55391 4.65744 4.73986 4.90185 4.99682 5.09184 5.19424 5.32159 5.40568 5.47025 5.83073 5.95682 6.09573 6.26115 6.39406 6.50989 6.77159 6.91312 7.00752 7.23415 7.26419 7.87977 8.12379 8.53805 8.85302 8.95360 10.31684 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.014370 B = 0.005660 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.011019 B = 4945.890387 C = 5248.441010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.417 5.417 3 C 0.140 3.860 4 C -0.742 4.742 5 S 2.587 3.413 6 O -0.973 6.973 7 O -0.997 6.997 8 N -0.806 5.806 9 C -0.257 4.257 10 H 0.127 0.873 11 C 0.032 3.968 12 N -0.846 5.846 13 Si 0.931 3.069 14 H -0.260 1.260 15 H -0.275 1.275 16 H -0.281 1.281 17 C 0.226 3.774 18 C 0.246 3.754 19 N -0.482 5.482 20 C 0.006 3.994 21 C -0.077 4.077 22 C 0.559 3.441 23 O -0.509 6.509 24 O -0.522 6.522 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.180 0.820 29 H 0.278 0.722 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.161 0.839 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.447 -0.980 -4.655 8.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.090 5.090 3 C -0.002 4.002 4 C -0.827 4.827 5 S 2.683 3.317 6 O -0.963 6.963 7 O -0.987 6.987 8 N -0.630 5.630 9 C -0.401 4.401 10 H 0.144 0.856 11 C -0.178 4.178 12 N -0.486 5.486 13 Si 0.756 3.244 14 H -0.184 1.184 15 H -0.201 1.201 16 H -0.207 1.207 17 C 0.096 3.904 18 C -0.072 4.072 19 N -0.163 5.163 20 C -0.020 4.020 21 C -0.184 4.184 22 C 0.405 3.595 23 O -0.397 6.397 24 O -0.335 6.335 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.197 0.803 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.119 0.881 32 H 0.179 0.821 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -8.668 -1.057 -4.646 9.891 hybrid contribution -0.065 -1.412 0.820 1.634 sum -8.734 -2.469 -3.826 9.849 Atomic orbital electron populations 1.22308 0.76278 1.05349 1.03776 1.44131 1.06803 1.05569 1.52531 1.21708 0.89178 0.91705 0.97616 1.32572 1.17056 1.09806 1.23238 1.08810 0.73325 0.73002 0.76529 1.93396 1.52140 1.72272 1.78477 1.93364 1.83179 1.43195 1.78922 1.55033 1.45394 1.31191 1.31419 1.20109 1.09828 1.17305 0.92837 0.85565 1.25469 0.99297 0.97237 0.95812 1.69921 1.30820 1.41095 1.06802 0.85770 0.80977 0.78530 0.79107 1.18381 1.20059 1.20747 1.18960 0.87988 0.88282 0.95183 1.29521 0.92647 0.92771 0.92307 1.80797 1.16012 1.08733 1.10779 1.20983 0.94239 0.92923 0.93872 1.19352 0.91074 0.83562 1.24384 1.19442 0.79766 0.87909 0.72411 1.90952 1.54864 1.46548 1.47348 1.84619 1.26653 1.35587 1.86685 0.90415 0.89445 0.88264 0.80320 0.91108 0.85078 0.88097 0.82135 0.73045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 10.57 59.85 0.63 1.33 16 2 N -0.42 -6.61 3.15 -120.40 -0.38 -6.99 16 3 C 0.14 2.43 11.09 -17.16 -0.19 2.24 16 4 C -0.74 -14.74 6.18 -39.98 -0.25 -14.99 16 5 S 2.59 54.92 5.80 -107.50 -0.62 54.30 16 6 O -0.97 -23.08 16.65 -57.17 -0.95 -24.03 16 7 O -1.00 -21.29 16.42 -57.17 -0.94 -22.23 16 8 N -0.81 -17.31 2.88 -62.77 -0.18 -17.49 16 9 C -0.26 -5.86 9.47 -15.06 -0.14 -6.01 16 10 H 0.13 2.90 7.22 -52.49 -0.38 2.52 16 11 C 0.03 0.72 4.90 -17.43 -0.09 0.63 16 12 N -0.85 -19.46 8.99 55.49 0.50 -18.96 16 13 Si 0.93 17.98 29.62 -169.99 -5.04 12.95 16 14 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 15 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 C 0.23 4.39 5.45 -6.82 -0.04 4.36 16 18 C 0.25 5.25 13.28 -20.79 -0.28 4.98 16 19 N -0.48 -11.00 18.53 42.11 0.78 -10.22 16 20 C 0.01 0.11 10.46 -39.09 -0.41 -0.29 16 21 C -0.08 -1.37 6.89 -81.99 -0.56 -1.93 16 22 C 0.56 8.95 8.29 34.06 0.28 9.23 16 23 O -0.51 -9.44 17.67 -19.36 -0.34 -9.78 16 24 O -0.52 -5.81 10.86 -41.01 -0.45 -6.25 16 25 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 1.04 6.13 -51.93 -0.32 0.72 16 28 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 29 H 0.28 6.17 8.31 -40.82 -0.34 5.83 16 30 H 0.13 2.51 6.47 -51.93 -0.34 2.18 16 31 H 0.10 1.67 6.95 -51.93 -0.36 1.31 16 32 H 0.16 3.16 8.06 -52.48 -0.42 2.73 16 33 H 0.41 2.57 9.11 45.56 0.42 2.98 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -32.15 315.05 -5.71 -37.86 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -1.80 Total: 6.54 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.04 Total: -0.45 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.72 Total: -53.65 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -2.68 Total: -62.29 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.04 Total: 12.95 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.62 Total: 54.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.15 -5.71 -37.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020213529.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.894 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds