Wall clock time and date at job start Tue Mar 31 2020 04:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34956 * 125.63962 * 2 1 4 4 C 1.35482 * 108.98914 * 179.97438 * 3 2 1 5 5 S 1.76205 * 126.07764 * 179.97438 * 4 3 2 6 6 O 1.42103 * 106.39933 * 203.53826 * 5 4 3 7 7 O 1.42091 * 106.40200 * 336.46274 * 5 4 3 8 8 N 1.65597 * 107.21731 * 90.00415 * 5 4 3 9 9 C 1.36939 * 120.00455 * 89.99768 * 8 5 4 10 10 H 1.07997 * 119.99368 * 7.24551 * 9 8 5 11 11 C 1.38816 * 120.00029 * 187.24554 * 9 8 5 12 12 N 1.31614 * 120.00452 * 25.59996 * 11 9 8 13 13 Si 1.86802 * 119.99687 * 205.59874 * 11 9 8 14 14 H 1.48506 * 109.47284 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47049 * 119.99659 * 13 11 9 16 16 H 1.48492 * 109.47081 * 240.00108 * 13 11 9 17 17 C 1.46506 * 120.00102 * 269.99952 * 8 5 4 18 18 C 1.47202 * 109.47357 * 93.31975 * 17 8 5 19 19 N 4.44582 * 104.78255 * 55.44866 * 2 1 3 20 20 C 1.39796 * 107.84224 * 0.02562 * 4 3 2 21 21 C 1.37702 * 125.63539 * 179.69526 * 2 1 3 22 22 C 1.46498 * 126.26087 * 0.02562 * 21 2 1 23 23 O 1.21622 * 119.99516 * 180.02562 * 22 21 2 24 24 O 1.34888 * 120.00013 * 359.97438 * 22 21 2 25 25 H 1.09008 * 109.46930 * 90.02529 * 1 2 3 26 26 H 1.09000 * 109.46978 * 330.02783 * 1 2 3 27 27 H 1.09003 * 109.47310 * 210.02134 * 1 2 3 28 28 H 1.07998 * 125.50246 * 0.02693 * 3 2 1 29 29 H 0.96993 * 120.00589 * 180.02562 * 12 11 9 30 30 H 1.08994 * 109.47440 * 213.32818 * 17 8 5 31 31 H 1.09006 * 109.46704 * 333.32344 * 17 8 5 32 32 H 1.08006 * 126.51552 * 179.97438 * 20 4 3 33 33 H 0.96704 * 117.00047 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0968 0.0000 4 6 3.5494 0.7086 0.0006 5 16 4.9515 1.7757 0.0002 6 8 6.0278 1.0237 -0.5435 7 8 4.5142 3.0127 -0.5451 8 7 5.3413 2.0735 1.5818 9 6 6.2206 1.2530 2.2366 10 1 6.7488 0.4839 1.6927 11 6 6.4329 1.4097 3.5995 12 7 5.4971 1.9454 4.3541 13 14 8.0471 0.8604 4.3624 14 1 8.9263 0.2951 3.3075 15 1 8.7181 2.0252 4.9934 16 1 7.7805 -0.1753 5.3926 17 6 4.7454 3.2149 2.2807 18 6 3.5332 2.7766 2.9917 19 7 2.5993 2.4380 3.5405 20 6 3.5784 -0.6891 0.0004 21 6 2.2673 -1.1191 0.0060 22 6 1.8120 -2.5116 0.0128 23 8 2.6243 -3.4168 0.0182 24 8 0.4921 -2.7896 0.0143 25 1 -0.3633 -0.0005 -1.0278 26 1 -0.3633 0.8902 0.5134 27 1 -0.3634 -0.8898 0.5142 28 1 1.9023 2.1188 0.0004 29 1 5.6455 2.0553 5.3062 30 1 5.4617 3.6166 2.9973 31 1 4.4831 3.9871 1.5574 32 1 4.4596 -1.3136 0.0003 33 1 0.2401 -3.7233 0.0185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020213529.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:05 Heat of formation + Delta-G solvation = -89.295943 kcal Electronic energy + Delta-G solvation = -24316.196942 eV Core-core repulsion = 20470.265436 eV Total energy + Delta-G solvation = -3845.931507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.62066 -40.74686 -38.33765 -37.77641 -37.27536 -36.41242 -36.16955 -34.07841 -33.34090 -30.96734 -29.10222 -27.72834 -25.77919 -25.24017 -22.51128 -21.15175 -20.31378 -19.90624 -19.33700 -18.74083 -18.38181 -17.76089 -17.17324 -16.74939 -16.39176 -16.23940 -16.09052 -15.92122 -15.31362 -14.93214 -14.64512 -14.48031 -14.03955 -13.73762 -13.49306 -13.45773 -13.22537 -13.16346 -13.09717 -12.78881 -12.74310 -12.71949 -12.57231 -12.17657 -12.11425 -11.98280 -11.84167 -11.71265 -11.31563 -10.24459 -10.07449 -9.67109 -8.35056 -5.79663 -0.09634 0.02110 1.01137 1.52706 1.53515 1.60128 1.72697 1.85959 1.96457 2.11901 2.38537 2.48203 2.88672 2.97744 3.27560 3.54082 3.73268 3.82946 3.92054 4.03419 4.32384 4.34847 4.52112 4.55151 4.74034 4.83114 4.95934 5.26968 5.33816 5.41816 5.56930 5.61143 5.99009 6.42756 6.80665 6.85486 7.18957 7.27093 8.65932 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.014370 B = 0.005660 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.011019 B = 4945.890387 C = 5248.441010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.405 5.405 3 C 0.145 3.855 4 C -0.769 4.769 5 S 2.631 3.369 6 O -1.001 7.001 7 O -0.995 6.995 8 N -0.822 5.822 9 C -0.292 4.292 10 H 0.113 0.887 11 C 0.008 3.992 12 N -0.873 5.873 13 Si 0.980 3.020 14 H -0.264 1.264 15 H -0.266 1.266 16 H -0.291 1.291 17 C 0.225 3.775 18 C 0.258 3.742 19 N -0.510 5.510 20 C -0.029 4.029 21 C -0.079 4.079 22 C 0.569 3.431 23 O -0.540 6.540 24 O -0.499 6.499 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.208 0.792 29 H 0.276 0.724 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 -0.682 -5.407 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.077 5.077 3 C 0.000 4.000 4 C -0.857 4.857 5 S 2.727 3.273 6 O -0.991 6.991 7 O -0.985 6.985 8 N -0.648 5.648 9 C -0.432 4.432 10 H 0.130 0.870 11 C -0.199 4.199 12 N -0.513 5.513 13 Si 0.804 3.196 14 H -0.188 1.188 15 H -0.191 1.191 16 H -0.217 1.217 17 C 0.095 3.905 18 C -0.060 4.060 19 N -0.192 5.192 20 C -0.054 4.054 21 C -0.188 4.188 22 C 0.415 3.585 23 O -0.431 6.431 24 O -0.314 6.314 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.225 0.775 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.165 0.835 33 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -10.788 -0.764 -5.344 12.063 hybrid contribution 0.354 -1.563 0.831 1.805 sum -10.434 -2.326 -4.513 11.604 Atomic orbital electron populations 1.22750 0.72958 1.06830 1.06068 1.44416 1.08645 1.04367 1.50231 1.22077 0.88450 0.93223 0.96241 1.32071 1.17608 1.09593 1.26430 1.06213 0.73013 0.72676 0.75374 1.93377 1.53771 1.73134 1.78804 1.93374 1.83293 1.43121 1.78683 1.54517 1.47131 1.32291 1.30827 1.19946 1.12342 1.17733 0.93171 0.86985 1.25899 1.00918 0.97332 0.95742 1.69972 1.31584 1.43103 1.06666 0.85060 0.78574 0.78042 0.77906 1.18756 1.19102 1.21735 1.19161 0.87343 0.88047 0.95936 1.29831 0.92481 0.91976 0.91702 1.80781 1.17133 1.09574 1.11688 1.21006 0.95307 0.93134 0.95999 1.19527 0.90815 0.85187 1.23279 1.19151 0.80900 0.86777 0.71686 1.90949 1.56188 1.47199 1.48767 1.84542 1.23397 1.38000 1.85510 0.87650 0.87369 0.87515 0.77543 0.91370 0.84876 0.84997 0.83501 0.70083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.93 10.57 127.77 1.35 2.28 16 2 N -0.40 -11.68 3.15 -534.84 -1.68 -13.36 16 3 C 0.14 4.68 11.09 83.58 0.93 5.60 16 4 C -0.77 -30.00 6.18 22.01 0.14 -29.87 16 5 S 2.63 110.69 5.80 -56.49 -0.33 110.36 16 6 O -1.00 -48.17 16.65 -128.00 -2.13 -50.30 16 7 O -0.99 -40.70 16.42 -128.00 -2.10 -42.80 16 8 N -0.82 -35.37 2.88 -352.49 -1.02 -36.38 16 9 C -0.29 -13.66 9.47 84.03 0.80 -12.87 16 10 H 0.11 5.41 7.22 -2.91 -0.02 5.39 16 11 C 0.01 0.36 4.90 84.86 0.42 0.78 16 12 N -0.87 -40.61 8.99 21.65 0.19 -40.42 16 13 Si 0.98 37.61 29.62 68.60 2.03 39.65 16 14 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 15 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 16 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 17 C 0.22 8.58 5.45 84.57 0.46 9.04 16 18 C 0.26 10.82 13.28 89.46 1.19 12.01 16 19 N -0.51 -22.84 18.53 19.99 0.37 -22.47 16 20 C -0.03 -1.14 10.46 22.59 0.24 -0.91 16 21 C -0.08 -2.72 6.89 40.32 0.28 -2.45 16 22 C 0.57 17.16 8.29 69.97 0.58 17.74 16 23 O -0.54 -19.65 17.67 19.44 0.34 -19.31 16 24 O -0.50 -9.32 10.86 -58.02 -0.63 -9.95 16 25 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.11 1.77 6.13 -2.39 -0.01 1.76 16 28 H 0.21 5.37 8.06 -2.91 -0.02 5.34 16 29 H 0.28 12.41 8.31 -92.71 -0.77 11.64 16 30 H 0.13 5.07 6.47 -2.39 -0.02 5.06 16 31 H 0.13 4.13 6.95 -2.38 -0.02 4.11 16 32 H 0.15 6.09 8.06 -2.91 -0.02 6.07 16 33 H 0.44 3.75 9.11 -74.05 -0.67 3.08 16 Total: -1.00 -69.50 315.05 1.94 -67.56 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.52 Total: 16.07 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.37 Total: 1.36 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -2.13 Total: -112.63 kcal Atomic # 8 Polarization: -117.85 SS G_CDS: -4.52 Total: -122.37 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.65 kcal Atomic # 16 Polarization: 110.69 SS G_CDS: -0.33 Total: 110.36 kcal Total: -69.50 1.94 -67.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020213529.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.735 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds