Wall clock time and date at job start Tue Mar 31 2020 04:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34937 * 120.51176 * 2 1 4 4 H 0.97003 * 119.36616 * 359.95709 * 3 2 1 5 5 C 1.34244 * 121.27738 * 179.97438 * 3 2 1 6 6 O 1.21924 * 118.84805 * 179.72252 * 5 3 2 7 7 N 1.33090 * 122.30498 * 359.97438 * 5 3 2 8 8 C 1.32705 * 120.82068 * 0.02562 * 7 5 3 9 9 S 1.76200 * 120.66607 * 180.02562 * 8 7 5 10 10 C 1.81000 * 99.99863 * 359.96798 * 9 8 7 11 11 C 1.50699 * 109.47141 * 180.02562 * 10 9 8 12 12 O 1.21295 * 120.00255 * 0.02562 * 11 10 9 13 13 N 1.34785 * 120.00083 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99848 * 179.97438 * 13 11 10 15 15 H 1.08004 * 120.00535 * 0.02562 * 14 13 11 16 16 C 1.38948 * 119.99670 * 179.97438 * 14 13 11 17 17 N 1.31404 * 120.00128 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46930 * 90.00161 * 18 16 14 20 20 H 1.48499 * 109.47218 * 209.99991 * 18 16 14 21 21 H 1.48498 * 109.47108 * 329.99996 * 18 16 14 22 22 C 1.38380 * 120.51850 * 179.97438 * 2 1 3 23 23 C 1.47087 * 121.02183 * 359.97438 * 22 2 1 24 24 O 1.21556 * 119.99930 * 0.02562 * 23 22 2 25 25 O 1.34788 * 120.00245 * 179.97438 * 23 22 2 26 26 H 1.08997 * 109.47273 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47003 * 119.99966 * 1 2 3 28 28 H 1.09004 * 109.47124 * 239.99887 * 1 2 3 29 29 H 1.08992 * 109.47285 * 300.00102 * 10 9 8 30 30 H 1.09001 * 109.47056 * 60.00151 * 10 9 8 31 31 H 0.96996 * 119.99652 * 0.02562 * 13 11 10 32 32 H 0.97009 * 119.99953 * 179.97438 * 17 16 14 33 33 H 0.96700 * 117.00003 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1921 1.1625 0.0000 4 1 1.7053 2.0015 -0.0006 5 6 3.5344 1.1805 0.0005 6 8 4.1084 2.2561 -0.0047 7 7 4.2607 0.0652 0.0015 8 6 3.6767 -1.1265 0.0016 9 16 4.6421 -2.6004 0.0037 10 6 6.3054 -1.8866 0.0042 11 6 7.3274 -2.9942 0.0053 12 8 6.9667 -4.1522 0.0052 13 7 8.6423 -2.6979 0.0063 14 6 9.5719 -3.7055 0.0079 15 1 9.2508 -4.7367 0.0078 16 6 10.9274 -3.4001 0.0084 17 7 11.3182 -2.1455 0.0080 18 14 12.1942 -4.7730 0.0098 19 1 12.5306 -5.1375 -1.3900 20 1 13.4206 -4.3142 0.7102 21 1 11.6384 -5.9586 0.7102 22 6 2.2097 -1.1921 0.0005 23 6 1.5088 -2.4852 0.0017 24 8 0.2937 -2.5179 0.0017 25 8 2.2138 -3.6340 0.0017 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 -0.3633 -0.5139 0.8900 29 1 6.4373 -1.2720 -0.8862 30 1 6.4360 -1.2703 0.8937 31 1 8.9307 -1.7718 0.0068 32 1 12.2646 -1.9323 0.0087 33 1 1.7091 -4.4588 0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037404714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:11 Heat of formation + Delta-G solvation = -144.075626 kcal Electronic energy + Delta-G solvation = -22782.607188 eV Core-core repulsion = 18934.300256 eV Total energy + Delta-G solvation = -3848.306932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.85940 -40.93529 -40.12753 -38.46222 -37.08967 -36.37343 -36.07698 -33.41551 -33.12220 -31.00512 -29.95293 -26.85496 -26.21216 -24.97384 -23.13519 -21.50199 -20.23632 -20.08493 -19.77118 -18.85905 -18.22338 -17.77557 -17.60817 -17.59025 -16.52434 -16.44519 -16.28638 -16.27162 -15.75581 -14.98660 -14.65225 -14.61812 -14.42500 -14.14179 -13.99574 -13.62282 -13.45276 -13.10175 -12.87495 -12.69049 -12.47982 -12.45010 -12.38516 -12.11515 -11.65780 -11.59234 -11.56265 -10.85318 -10.58289 -10.10774 -10.02151 -9.11189 -8.50617 -6.01272 -0.72895 -0.36476 0.07803 0.84904 1.32955 1.36966 1.43482 1.56911 1.57193 1.89316 2.23133 2.28901 2.38405 2.81755 3.05201 3.15650 3.24085 3.66747 3.75395 4.12038 4.17500 4.29539 4.46319 4.55072 4.59996 4.87342 5.10614 5.25517 5.38423 5.66095 5.89905 6.40884 6.46275 6.76838 7.02731 7.06219 7.42198 7.93112 8.66457 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.003273 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.216009 B = 8553.448035 C = 9769.216545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.322 3.678 3 N -0.603 5.603 4 H 0.442 0.558 5 C 0.643 3.357 6 O -0.569 6.569 7 N -0.599 5.599 8 C 0.242 3.758 9 S 0.171 5.829 10 C -0.159 4.159 11 C 0.452 3.548 12 O -0.614 6.614 13 N -0.558 5.558 14 C -0.337 4.337 15 H 0.089 0.911 16 C -0.012 4.012 17 N -0.918 5.918 18 Si 0.999 3.001 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.267 1.267 22 C -0.303 4.303 23 C 0.559 3.441 24 O -0.524 6.524 25 O -0.500 6.500 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.397 0.603 32 H 0.280 0.720 33 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.761 3.729 -0.005 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.198 3.802 3 N -0.241 5.241 4 H 0.285 0.715 5 C 0.341 3.659 6 O -0.447 6.447 7 N -0.344 5.344 8 C -0.028 4.028 9 S 0.412 5.588 10 C -0.310 4.310 11 C 0.238 3.762 12 O -0.502 6.502 13 N -0.194 5.194 14 C -0.466 4.466 15 H 0.107 0.893 16 C -0.212 4.212 17 N -0.558 5.558 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.192 1.192 22 C -0.317 4.317 23 C 0.404 3.596 24 O -0.417 6.417 25 O -0.316 6.316 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.231 0.769 32 H 0.089 0.911 33 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -23.766 3.119 -0.003 23.970 hybrid contribution 0.473 1.288 -0.007 1.372 sum -23.293 4.407 -0.010 23.706 Atomic orbital electron populations 1.21603 0.81807 1.06933 1.07455 1.21780 0.97311 0.83169 0.77982 1.44030 1.08975 1.10683 1.60364 0.71484 1.17960 0.80182 0.89226 0.78518 1.91015 1.69637 1.29379 1.54681 1.70342 1.35166 0.97135 1.31758 1.26633 0.94714 0.98463 0.82994 1.86965 0.93160 0.96069 1.82642 1.23820 0.96852 1.01376 1.08934 1.19646 0.83463 0.89166 0.83889 1.90524 1.80154 1.21813 1.57699 1.41855 1.04224 1.09864 1.63428 1.19792 0.86806 0.89652 1.50357 0.89279 1.26173 0.99473 0.99846 0.95727 1.69697 1.18105 1.18686 1.49335 0.84846 0.76815 0.77428 0.78771 1.19478 1.19719 1.19183 1.19730 0.90151 0.92771 1.29089 1.19328 0.84423 0.83763 0.72113 1.90892 1.14155 1.88128 1.48495 1.84545 1.44486 1.17607 1.84925 0.86537 0.86210 0.86214 0.86281 0.86272 0.76858 0.91090 0.69845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 8.51 71.24 0.61 0.02 16 2 C 0.32 4.37 6.91 42.12 0.29 4.66 16 3 N -0.60 -9.97 5.18 -312.49 -1.62 -11.59 16 4 H 0.44 4.02 8.60 -92.71 -0.80 3.22 16 5 C 0.64 18.91 8.53 179.74 1.53 20.44 16 6 O -0.57 -21.13 18.00 -5.07 -0.09 -21.23 16 7 N -0.60 -19.21 9.34 -316.88 -2.96 -22.17 16 8 C 0.24 6.61 7.23 86.81 0.63 7.24 16 9 S 0.17 5.30 18.32 -56.49 -1.04 4.26 16 10 C -0.16 -5.91 5.36 71.24 0.38 -5.53 16 11 C 0.45 21.55 7.80 87.66 0.68 22.24 16 12 O -0.61 -32.48 15.44 -3.08 -0.05 -32.53 16 13 N -0.56 -29.01 5.29 -306.97 -1.62 -30.63 16 14 C -0.34 -18.91 9.68 84.04 0.81 -18.09 16 15 H 0.09 5.22 7.16 -2.91 -0.02 5.20 16 16 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 17 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 18 Si 1.00 42.35 29.55 68.60 2.03 44.38 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 C -0.30 -6.01 6.05 -18.67 -0.11 -6.12 16 23 C 0.56 9.84 8.24 70.14 0.58 10.42 16 24 O -0.52 -9.07 14.38 19.65 0.28 -8.79 16 25 O -0.50 -8.17 10.33 -57.00 -0.59 -8.76 16 26 H 0.12 -0.23 7.93 -2.39 -0.02 -0.25 16 27 H 0.12 0.63 7.41 -2.39 -0.02 0.61 16 28 H 0.12 0.63 7.40 -2.39 -0.02 0.61 16 29 H 0.12 4.27 8.14 -2.40 -0.02 4.25 16 30 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 31 H 0.40 20.11 7.90 -92.71 -0.73 19.38 16 32 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 33 H 0.44 2.84 9.11 -74.06 -0.67 2.17 16 Total: -1.00 -79.50 314.11 -0.47 -79.97 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.97 Total: 21.73 kcal Atomic # 6 Polarization: 29.25 SS G_CDS: 5.87 Total: 35.12 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -5.92 Total: -114.16 kcal Atomic # 8 Polarization: -70.86 SS G_CDS: -0.45 Total: -71.30 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.04 Total: 4.26 kcal Total: -79.50 -0.47 -79.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037404714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.107 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds