Wall clock time and date at job start Tue Mar 31 2020 04:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35913 * 117.00217 * 2 1 4 4 C 1.38749 * 120.04275 * 359.72079 * 3 2 1 5 5 C 1.38124 * 119.95112 * 179.72322 * 4 3 2 6 6 C 1.38370 * 120.04466 * 0.55660 * 5 4 3 7 7 Br 1.89100 * 119.95467 * 179.74718 * 6 5 4 8 8 C 1.38325 * 120.09127 * 359.72330 * 6 5 4 9 9 C 1.38163 * 120.04561 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.02512 * 179.97438 * 9 8 6 11 11 N 1.46894 * 109.47725 * 260.02925 * 10 9 8 12 12 C 1.46902 * 110.99990 * 293.95432 * 11 10 9 13 13 C 1.46897 * 111.00588 * 169.99910 * 11 10 9 14 14 C 1.50703 * 109.47113 * 189.99907 * 13 11 10 15 15 H 1.07999 * 119.99860 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99645 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00412 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99948 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47081 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47377 * 120.00315 * 18 16 14 21 21 H 1.48502 * 109.47525 * 240.00149 * 18 16 14 22 22 H 1.09001 * 109.47103 * 300.00583 * 1 2 3 23 23 H 1.09004 * 109.47054 * 60.00087 * 1 2 3 24 24 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.02624 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.97918 * 180.25547 * 5 4 3 27 27 H 1.07993 * 119.97560 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.46753 * 20.02933 * 10 9 8 29 29 H 1.09000 * 109.47143 * 140.02547 * 10 9 8 30 30 H 1.09001 * 109.47332 * 59.99429 * 12 11 10 31 31 H 1.08991 * 109.47839 * 179.97438 * 12 11 10 32 32 H 1.09005 * 109.46651 * 300.00009 * 12 11 10 33 33 H 1.09006 * 109.46827 * 309.99796 * 13 11 10 34 34 H 1.09000 * 109.47038 * 69.99984 * 13 11 10 35 35 H 0.97005 * 120.00235 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3752 -0.0059 5 6 1.9204 3.6049 -0.0001 6 6 3.3023 3.6762 -0.0001 7 35 4.1608 5.3610 0.0006 8 6 4.0566 2.5166 -0.0001 9 6 3.4312 1.2846 0.0004 10 6 4.2534 0.0217 -0.0002 11 7 4.3186 -0.5196 -1.3642 12 6 2.9942 -0.9647 -1.8178 13 6 5.2989 -1.6102 -1.4516 14 6 5.5185 -1.9736 -2.8976 15 1 4.9830 -1.4473 -3.6739 16 6 6.4029 -2.9779 -3.2293 17 7 7.0546 -3.6191 -2.2838 18 14 6.6746 -3.4288 -5.0215 19 1 5.8276 -2.5654 -5.8831 20 1 8.1036 -3.2269 -5.3717 21 1 6.3092 -4.8523 -5.2348 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2128 2.3200 -0.0100 26 1 1.3334 4.5114 -0.0004 27 1 5.1349 2.5745 0.0003 28 1 5.2611 0.2441 0.3510 29 1 3.7922 -0.7124 0.6604 30 1 2.3046 -0.1206 -1.8093 31 1 3.0709 -1.3605 -2.8304 32 1 2.6241 -1.7429 -1.1502 33 1 6.2420 -1.2871 -1.0108 34 1 4.9242 -2.4796 -0.9113 35 1 7.6771 -4.3254 -2.5173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042207045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:49 Heat of formation + Delta-G solvation = -1.095496 kcal Electronic energy + Delta-G solvation = -18301.301243 eV Core-core repulsion = 15346.263345 eV Total energy + Delta-G solvation = -2955.037897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 313.042 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42569 -37.53868 -36.34466 -32.80989 -31.77777 -31.34737 -28.97147 -27.47596 -27.09195 -26.33445 -23.96164 -22.04614 -21.39786 -20.02337 -18.01264 -16.58864 -16.26782 -16.03309 -15.41455 -14.72268 -14.51637 -14.22623 -13.87706 -13.59131 -13.54688 -12.93163 -12.51080 -12.03480 -11.88928 -11.72293 -11.63539 -11.29344 -11.03847 -10.87030 -10.75007 -10.59376 -10.41196 -10.24820 -10.13548 -9.80904 -9.18367 -8.89171 -8.40492 -8.07066 -7.15108 -5.99259 -3.99971 1.20217 1.27565 1.68932 3.26548 3.33256 3.40529 3.45807 3.60231 4.46516 4.64841 4.73786 4.97767 5.07180 5.16429 5.23022 5.32953 5.39056 5.40888 5.52069 5.73683 5.86835 6.10371 6.17076 6.22289 6.37665 6.40990 6.56351 6.70990 6.91361 7.32614 7.33504 7.40411 7.84518 8.12709 8.26396 8.59607 9.08125 9.63968 11.11717 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003950 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.225460 B = 7086.165459 C = 8337.223414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.299 6.299 3 C 0.149 3.851 4 C -0.207 4.207 5 C -0.060 4.060 6 C -0.127 4.127 7 Br -0.062 7.062 8 C -0.038 4.038 9 C -0.085 4.085 10 C 0.098 3.902 11 N -0.535 5.535 12 C 0.043 3.957 13 C 0.192 3.808 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.100 0.900 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.140 0.860 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.015 0.985 33 H 0.029 0.971 34 H -0.009 1.009 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.734 16.058 7.728 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.212 6.212 3 C 0.103 3.897 4 C -0.227 4.227 5 C -0.080 4.080 6 C -0.206 4.206 7 Br 0.023 6.977 8 C -0.058 4.058 9 C -0.087 4.087 10 C -0.030 4.030 11 N -0.259 5.259 12 C -0.105 4.105 13 C 0.067 3.933 14 C -0.542 4.542 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.212 1.212 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.118 0.882 25 H 0.151 0.849 26 H 0.148 0.852 27 H 0.158 0.842 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.048 0.952 34 H 0.009 0.991 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.037 16.701 7.436 21.889 hybrid contribution -0.514 -1.199 -0.423 1.371 sum -12.551 15.503 7.012 21.143 Atomic orbital electron populations 1.23071 0.78976 1.04083 1.01074 1.86384 1.20894 1.26197 1.87693 1.18937 0.91975 0.84379 0.94446 1.21134 1.00016 0.91721 1.09792 1.20754 0.92343 0.97672 0.97253 1.21550 0.94759 0.91171 1.13138 1.96650 1.79878 1.23124 1.98013 1.20869 1.00311 0.89371 0.95262 1.19398 0.90511 0.96052 1.02768 1.20883 0.97986 0.91660 0.92510 1.62200 1.08100 1.36952 1.18652 1.22321 0.89968 0.97808 1.00426 1.19751 0.89777 0.86256 0.97484 1.21199 1.23747 1.17128 0.92129 0.91846 1.24980 0.95902 0.96249 0.97512 1.69972 1.27839 1.24082 1.32055 0.86459 0.77980 0.78051 0.85036 1.19681 1.21018 1.21160 0.92873 0.92582 0.88181 0.84928 0.85230 0.84245 0.90447 0.94321 0.93214 0.91573 0.96651 0.95247 0.99091 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.22 6.54 -19.47 -0.13 -4.35 16 3 C 0.15 2.15 5.40 -39.22 -0.21 1.94 16 4 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 5 C -0.06 -0.71 9.78 -39.57 -0.39 -1.09 16 6 C -0.13 -1.67 6.22 -39.50 -0.25 -1.92 16 7 Br -0.06 -0.73 33.70 -68.01 -2.29 -3.02 16 8 C -0.04 -0.56 9.40 -39.58 -0.37 -0.93 16 9 C -0.09 -1.37 5.17 -104.48 -0.54 -1.91 16 10 C 0.10 1.83 4.99 -4.98 -0.02 1.81 16 11 N -0.53 -11.95 4.74 -245.83 -1.17 -13.12 16 12 C 0.04 0.89 7.86 60.07 0.47 1.36 16 13 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 14 C -0.50 -14.37 8.46 -34.44 -0.29 -14.67 16 15 H 0.06 1.81 7.12 -52.49 -0.37 1.44 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 18 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 23 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.13 1.20 6.30 -52.49 -0.33 0.86 16 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.14 1.98 8.04 -52.49 -0.42 1.56 16 28 H 0.08 1.41 7.79 -51.93 -0.40 1.00 16 29 H 0.04 0.73 7.83 -51.93 -0.41 0.33 16 30 H 0.05 0.92 4.99 -51.93 -0.26 0.66 16 31 H 0.07 1.46 6.76 -51.93 -0.35 1.11 16 32 H 0.01 0.31 7.71 -51.93 -0.40 -0.09 16 33 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 34 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -31.03 307.88 -8.87 -39.91 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -4.56 Total: -4.23 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -1.09 Total: -10.47 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.43 Total: -39.36 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.13 Total: -4.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.03 -8.87 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042207045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds