Wall clock time and date at job start Tue Mar 31 2020 04:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35913 * 117.00217 * 2 1 4 4 C 1.38749 * 120.04275 * 359.72079 * 3 2 1 5 5 C 1.38124 * 119.95112 * 179.72322 * 4 3 2 6 6 C 1.38370 * 120.04466 * 0.55660 * 5 4 3 7 7 Br 1.89100 * 119.95467 * 179.74718 * 6 5 4 8 8 C 1.38325 * 120.09127 * 359.72330 * 6 5 4 9 9 C 1.38163 * 120.04561 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.02512 * 179.97438 * 9 8 6 11 11 N 1.46894 * 109.47725 * 260.02925 * 10 9 8 12 12 C 1.46902 * 110.99990 * 293.95432 * 11 10 9 13 13 C 1.46897 * 111.00588 * 169.99910 * 11 10 9 14 14 C 1.50703 * 109.47113 * 189.99907 * 13 11 10 15 15 H 1.07999 * 119.99860 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99645 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00412 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99948 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47081 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47377 * 120.00315 * 18 16 14 21 21 H 1.48502 * 109.47525 * 240.00149 * 18 16 14 22 22 H 1.09001 * 109.47103 * 300.00583 * 1 2 3 23 23 H 1.09004 * 109.47054 * 60.00087 * 1 2 3 24 24 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.02624 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.97918 * 180.25547 * 5 4 3 27 27 H 1.07993 * 119.97560 * 180.02562 * 8 6 5 28 28 H 1.09005 * 109.46753 * 20.02933 * 10 9 8 29 29 H 1.09000 * 109.47143 * 140.02547 * 10 9 8 30 30 H 1.09001 * 109.47332 * 59.99429 * 12 11 10 31 31 H 1.08991 * 109.47839 * 179.97438 * 12 11 10 32 32 H 1.09005 * 109.46651 * 300.00009 * 12 11 10 33 33 H 1.09006 * 109.46827 * 309.99796 * 13 11 10 34 34 H 1.09000 * 109.47038 * 69.99984 * 13 11 10 35 35 H 0.97005 * 120.00235 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3752 -0.0059 5 6 1.9204 3.6049 -0.0001 6 6 3.3023 3.6762 -0.0001 7 35 4.1608 5.3610 0.0006 8 6 4.0566 2.5166 -0.0001 9 6 3.4312 1.2846 0.0004 10 6 4.2534 0.0217 -0.0002 11 7 4.3186 -0.5196 -1.3642 12 6 2.9942 -0.9647 -1.8178 13 6 5.2989 -1.6102 -1.4516 14 6 5.5185 -1.9736 -2.8976 15 1 4.9830 -1.4473 -3.6739 16 6 6.4029 -2.9779 -3.2293 17 7 7.0546 -3.6191 -2.2838 18 14 6.6746 -3.4288 -5.0215 19 1 5.8276 -2.5654 -5.8831 20 1 8.1036 -3.2269 -5.3717 21 1 6.3092 -4.8523 -5.2348 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2128 2.3200 -0.0100 26 1 1.3334 4.5114 -0.0004 27 1 5.1349 2.5745 0.0003 28 1 5.2611 0.2441 0.3510 29 1 3.7922 -0.7124 0.6604 30 1 2.3046 -0.1206 -1.8093 31 1 3.0709 -1.3605 -2.8304 32 1 2.6241 -1.7429 -1.1502 33 1 6.2420 -1.2871 -1.0108 34 1 4.9242 -2.4796 -0.9113 35 1 7.6771 -4.3254 -2.5173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042207045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:48 Heat of formation + Delta-G solvation = -20.400121 kcal Electronic energy + Delta-G solvation = -18302.138354 eV Core-core repulsion = 15346.263345 eV Total energy + Delta-G solvation = -2955.875009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 313.042 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48179 -38.58075 -38.00910 -34.81386 -33.04146 -32.47886 -30.00309 -29.14464 -28.46068 -27.60984 -25.74631 -23.19299 -22.82415 -21.59151 -19.03000 -18.50122 -17.49758 -17.21471 -16.78162 -16.37289 -15.69944 -15.54490 -15.50741 -15.03853 -14.76025 -14.08793 -14.01273 -13.62193 -13.37511 -12.96248 -12.92152 -12.71616 -12.60050 -12.50239 -12.39858 -12.08165 -11.97104 -11.74160 -11.33204 -11.20365 -11.11771 -10.62220 -9.98881 -9.15988 -8.93764 -8.19847 -6.30071 0.16657 0.23320 0.70074 1.40922 1.41853 1.55643 2.36176 2.40227 2.54448 3.12427 3.49962 3.68658 3.77960 4.06916 4.18753 4.32726 4.43481 4.44193 4.46276 4.61790 4.73758 4.76493 4.82432 4.89260 5.08602 5.11405 5.16090 5.23993 5.28521 5.30043 5.63572 5.65436 6.04572 6.31843 6.41122 6.61791 6.85927 7.39500 8.91463 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003950 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.225460 B = 7086.165459 C = 8337.223414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.143 3.857 4 C -0.197 4.197 5 C -0.050 4.050 6 C -0.136 4.136 7 Br -0.050 7.050 8 C -0.046 4.046 9 C -0.114 4.114 10 C 0.104 3.896 11 N -0.542 5.542 12 C 0.056 3.944 13 C 0.208 3.792 14 C -0.522 4.522 15 H 0.061 0.939 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.168 0.832 26 H 0.160 0.840 27 H 0.133 0.867 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.011 0.989 33 H 0.005 0.995 34 H -0.039 1.039 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.725 17.562 6.925 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.096 3.904 4 C -0.216 4.216 5 C -0.069 4.069 6 C -0.216 4.216 7 Br 0.035 6.965 8 C -0.067 4.067 9 C -0.116 4.116 10 C -0.024 4.024 11 N -0.266 5.266 12 C -0.092 4.092 13 C 0.081 3.919 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.196 4.196 17 N -0.575 5.575 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.203 1.203 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.128 0.872 25 H 0.185 0.815 26 H 0.178 0.822 27 H 0.151 0.849 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.023 0.977 34 H -0.021 1.021 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.050 18.222 6.644 23.950 hybrid contribution 0.035 -1.599 -0.089 1.602 sum -14.015 16.623 6.554 22.709 Atomic orbital electron populations 1.23395 0.76473 1.05453 1.02785 1.86330 1.23568 1.26460 1.87612 1.19040 0.91472 0.85500 0.94364 1.21472 1.01571 0.90534 1.08023 1.21162 0.91830 0.98896 0.95058 1.21679 0.95571 0.91138 1.13171 1.96659 1.79994 1.21812 1.97985 1.20851 1.00315 0.89776 0.95725 1.19162 0.91409 0.94866 1.06142 1.20784 0.98440 0.92964 0.90218 1.62126 1.08254 1.34954 1.21311 1.22223 0.89462 0.98612 0.98935 1.19404 0.89814 0.86393 0.96251 1.21466 1.24120 1.17593 0.92820 0.92097 1.25909 0.95341 0.95934 1.02396 1.70096 1.28359 1.24585 1.34497 0.85322 0.78102 0.78008 0.79109 1.18837 1.20293 1.20253 0.90742 0.91119 0.87226 0.81468 0.82216 0.84878 0.91075 0.95124 0.90657 0.93499 0.97024 0.97698 1.02085 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.75 6.54 -92.57 -0.61 -9.35 16 3 C 0.14 3.89 5.40 22.50 0.12 4.01 16 4 C -0.20 -3.98 9.04 22.37 0.20 -3.78 16 5 C -0.05 -1.00 9.78 22.27 0.22 -0.78 16 6 C -0.14 -3.34 6.22 22.32 0.14 -3.20 16 7 Br -0.05 -1.08 33.70 -20.37 -0.69 -1.77 16 8 C -0.05 -1.36 9.40 22.27 0.21 -1.15 16 9 C -0.11 -3.66 5.17 -19.77 -0.10 -3.77 16 10 C 0.10 4.06 4.99 85.56 0.43 4.48 16 11 N -0.54 -25.10 4.74 -931.66 -4.42 -29.52 16 12 C 0.06 2.33 7.86 127.69 1.00 3.33 16 13 C 0.21 11.57 4.72 85.56 0.40 11.98 16 14 C -0.52 -30.57 8.46 25.60 0.22 -30.35 16 15 H 0.06 3.53 7.12 -2.91 -0.02 3.51 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 18 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 23 H 0.07 0.91 7.65 -2.38 -0.02 0.89 16 24 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.17 2.17 6.30 -2.91 -0.02 2.15 16 26 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 27 H 0.13 3.91 8.04 -2.91 -0.02 3.88 16 28 H 0.07 2.77 7.79 -2.38 -0.02 2.75 16 29 H 0.03 1.23 7.83 -2.39 -0.02 1.21 16 30 H 0.08 2.75 4.99 -2.39 -0.01 2.73 16 31 H 0.05 2.10 6.76 -2.39 -0.02 2.08 16 32 H 0.01 0.48 7.71 -2.38 -0.02 0.46 16 33 H 0.00 0.29 7.93 -2.38 -0.02 0.27 16 34 H -0.04 -2.33 8.12 -2.39 -0.02 -2.34 16 35 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -68.13 307.88 2.10 -66.03 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.09 Total: 1.79 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 4.41 Total: -17.32 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -4.13 Total: -86.54 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.61 Total: -9.35 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 35 Polarization: -1.08 SS G_CDS: -0.69 Total: -1.77 kcal Total: -68.13 2.10 -66.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042207045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.632 kcal (2) G-P(sol) polarization free energy of solvation -68.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds