Wall clock time and date at job start Tue Mar 31 2020 04:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 120.00259 * 2 1 4 4 H 1.48504 * 109.46875 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47056 * 119.99371 * 3 2 1 6 6 H 1.48501 * 109.46624 * 239.99456 * 3 2 1 7 7 C 1.38952 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00320 * 202.88984 * 7 2 1 9 9 N 1.37090 * 119.99916 * 22.90091 * 7 2 1 10 10 C 1.34779 * 120.00456 * 43.97039 * 9 7 2 11 11 O 1.21295 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00197 * 180.02562 * 10 9 7 13 13 C 1.50699 * 109.46922 * 179.97438 * 12 10 9 14 14 C 1.38341 * 120.01263 * 269.72402 * 13 12 10 15 15 Cl 1.73600 * 120.00443 * 0.02562 * 14 13 12 16 16 C 1.38359 * 119.98399 * 179.75117 * 14 13 12 17 17 C 1.38219 * 120.01214 * 0.54512 * 16 14 13 18 18 C 1.38218 * 120.03050 * 359.70983 * 17 16 14 19 19 C 1.38329 * 120.01363 * 90.00307 * 13 12 10 20 20 Cl 1.73595 * 120.00442 * 359.97438 * 19 13 12 21 21 C 1.46508 * 120.00084 * 223.97403 * 9 7 2 22 22 C 1.53002 * 117.49453 * 5.29030 * 21 9 7 23 23 C 1.53004 * 60.00148 * 252.51359 * 22 21 9 24 24 H 0.96999 * 120.00014 * 185.99251 * 1 2 3 25 25 H 1.08995 * 109.47434 * 300.00141 * 12 10 9 26 26 H 1.09001 * 109.47130 * 60.00236 * 12 10 9 27 27 H 1.07997 * 119.99227 * 180.30337 * 16 14 13 28 28 H 1.08001 * 119.98556 * 179.72462 * 17 16 14 29 29 H 1.07993 * 119.99895 * 179.97438 * 18 17 16 30 30 H 1.08999 * 115.55190 * 150.99993 * 21 9 7 31 31 H 1.08996 * 117.49764 * 0.02562 * 22 21 9 32 32 H 1.08999 * 117.49659 * 145.02224 * 22 21 9 33 33 H 1.08998 * 117.50051 * 252.51877 * 23 22 21 34 34 H 1.09000 * 117.51908 * 107.48332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2832 2.7465 -0.0006 5 1 3.1018 1.6964 1.2125 6 1 3.1020 1.6962 -1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0251 -1.2402 0.3644 9 7 1.4044 -2.3440 -0.4610 10 6 0.6815 -2.3109 -1.5980 11 8 0.5654 -1.2718 -2.2128 12 6 0.0165 -3.5647 -2.1050 13 6 -0.7236 -3.2597 -3.3818 14 6 -2.0472 -2.8600 -3.3358 15 17 -2.8558 -2.7092 -1.8070 16 6 -2.7246 -2.5752 -4.5081 17 6 -2.0825 -2.7006 -5.7256 18 6 -0.7616 -3.1050 -5.7725 19 6 -0.0814 -3.3847 -4.6006 20 17 1.5776 -3.8925 -4.6596 21 6 1.5440 -3.5990 0.2819 22 6 2.2712 -3.5465 1.6271 23 6 2.9498 -4.1883 0.4152 24 1 -0.4850 -0.8354 0.0877 25 1 0.7733 -4.3255 -2.2961 26 1 -0.6863 -3.9312 -1.3568 27 1 -3.7565 -2.2584 -4.4720 28 1 -2.6130 -2.4824 -6.6407 29 1 -0.2605 -3.2032 -6.7241 30 1 0.7126 -4.2973 0.1858 31 1 2.6452 -2.5782 1.9594 32 1 1.9181 -4.2102 2.4163 33 1 3.0430 -5.2743 0.4071 34 1 3.7705 -3.6425 -0.0502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:07 Heat of formation + Delta-G solvation = 12.872778 kcal Electronic energy + Delta-G solvation = -21880.787882 eV Core-core repulsion = 18445.659450 eV Total energy + Delta-G solvation = -3435.128431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.038 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.65233 -38.46909 -36.47530 -36.16791 -35.97657 -33.19976 -32.32505 -30.70420 -30.44860 -27.50763 -24.38633 -22.66370 -21.98526 -21.68904 -21.18656 -19.29387 -17.10385 -16.70443 -16.37255 -16.01493 -15.42790 -14.60198 -14.20473 -14.14238 -13.77713 -13.62220 -13.47210 -13.14255 -12.75599 -12.25785 -12.02202 -11.86611 -11.54905 -11.50254 -11.04759 -10.88306 -10.85990 -10.70882 -10.56721 -10.44092 -10.19678 -10.06295 -9.83898 -9.66881 -8.75638 -8.53219 -8.50168 -8.02578 -7.28673 -6.31395 -3.83629 1.16608 1.25416 2.12007 2.54918 3.44019 3.55540 3.58788 3.69465 3.95751 4.36983 4.66269 4.71490 4.85652 4.96689 5.02104 5.31385 5.35664 5.50493 5.52870 5.59533 5.62128 5.70599 5.78221 5.97671 6.06676 6.17125 6.18494 6.28319 6.38229 6.41049 6.66282 6.71243 6.89160 7.93703 8.46097 8.85214 9.23134 9.60894 10.13632 10.97136 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.006196 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.657339 B = 4517.831322 C = 4922.348848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.042 3.958 3 Si 1.072 2.928 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.429 4.429 8 H 0.069 0.931 9 N -0.430 5.430 10 C 0.477 3.523 11 O -0.526 6.526 12 C -0.112 4.112 13 C -0.028 4.028 14 C -0.012 4.012 15 Cl -0.052 7.052 16 C -0.108 4.108 17 C -0.106 4.106 18 C -0.110 4.110 19 C -0.014 4.014 20 Cl -0.058 7.058 21 C 0.066 3.934 22 C -0.172 4.172 23 C -0.203 4.203 24 H 0.272 0.728 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -10.185 -7.136 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.172 4.172 3 Si 0.900 3.100 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.555 4.555 8 H 0.086 0.914 9 N -0.152 5.152 10 C 0.264 3.736 11 O -0.404 6.404 12 C -0.152 4.152 13 C -0.030 4.030 14 C -0.039 4.039 15 Cl -0.022 7.022 16 C -0.127 4.127 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.041 4.041 20 Cl -0.029 7.029 21 C -0.040 4.040 22 C -0.209 4.209 23 C -0.242 4.242 24 H 0.083 0.917 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.651 -8.018 -7.396 11.503 hybrid contribution 0.317 -1.876 0.320 1.929 sum -3.335 -9.894 -7.076 12.613 Atomic orbital electron populations 1.70545 1.07374 1.31171 1.38116 1.26091 0.96013 1.02001 0.93057 0.83482 0.75021 0.75232 0.76305 1.20753 1.21668 1.21243 1.19695 0.98430 0.86787 1.50620 0.91363 1.42893 1.47539 1.06498 1.18264 1.19601 0.83758 0.88628 0.81573 1.90634 1.61263 1.31744 1.56749 1.20882 1.00004 1.00277 0.94060 1.19130 0.91961 0.97608 0.94264 1.20623 0.92707 1.02758 0.87813 1.98383 1.78412 1.96057 1.29394 1.21058 1.00695 1.00159 0.90777 1.20928 0.94086 0.99936 0.97538 1.21031 0.94765 1.00003 0.97052 1.20572 0.86367 1.03240 0.93900 1.98362 1.16926 1.89034 1.98588 1.21786 0.93808 0.91016 0.97406 1.23070 1.04280 1.02788 0.90795 1.23263 0.98210 0.98858 1.03828 0.91728 0.88740 0.89050 0.84645 0.84527 0.84695 0.88119 0.87339 0.89798 0.89762 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.53 12.39 55.50 0.69 -24.84 16 2 C 0.04 1.20 4.22 -17.47 -0.07 1.13 16 3 Si 1.07 26.07 29.98 -169.99 -5.10 20.97 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.43 -11.84 7.80 -14.94 -0.12 -11.96 16 8 H 0.07 1.86 7.37 -52.48 -0.39 1.48 16 9 N -0.43 -10.73 2.59 -107.72 -0.28 -11.01 16 10 C 0.48 11.84 6.44 -10.98 -0.07 11.77 16 11 O -0.53 -15.27 13.94 5.54 0.08 -15.20 16 12 C -0.11 -2.19 3.64 -29.03 -0.11 -2.30 16 13 C -0.03 -0.51 4.38 -104.55 -0.46 -0.97 16 14 C -0.01 -0.21 6.31 -39.50 -0.25 -0.46 16 15 Cl -0.05 -0.92 27.29 -51.86 -1.42 -2.33 16 16 C -0.11 -1.55 9.83 -39.54 -0.39 -1.94 16 17 C -0.11 -1.34 10.04 -39.60 -0.40 -1.74 16 18 C -0.11 -1.52 9.83 -39.54 -0.39 -1.91 16 19 C -0.01 -0.23 6.31 -39.50 -0.25 -0.48 16 20 Cl -0.06 -0.95 27.30 -51.86 -1.42 -2.37 16 21 C 0.07 1.32 5.92 -67.92 -0.40 0.92 16 22 C -0.17 -3.14 9.80 -26.73 -0.26 -3.40 16 23 C -0.20 -3.53 10.33 -26.73 -0.28 -3.81 16 24 H 0.27 8.31 7.43 -40.82 -0.30 8.01 16 25 H 0.09 1.70 6.87 -51.93 -0.36 1.34 16 26 H 0.09 1.68 6.31 -51.93 -0.33 1.36 16 27 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.10 1.80 6.89 -51.93 -0.36 1.44 16 31 H 0.11 2.23 6.77 -51.93 -0.35 1.87 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -33.27 319.91 -9.48 -42.75 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.42 Total: 2.36 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.44 Total: -15.15 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.41 Total: -35.85 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.08 Total: -15.20 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.10 Total: 20.97 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -2.83 Total: -4.70 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.27 -9.48 -42.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.620 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds