Wall clock time and date at job start Tue Mar 31 2020 04:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 120.00259 * 2 1 4 4 H 1.48504 * 109.46875 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47056 * 119.99371 * 3 2 1 6 6 H 1.48501 * 109.46624 * 239.99456 * 3 2 1 7 7 C 1.38952 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00320 * 202.88984 * 7 2 1 9 9 N 1.37090 * 119.99916 * 22.90091 * 7 2 1 10 10 C 1.34779 * 120.00456 * 43.97039 * 9 7 2 11 11 O 1.21295 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00197 * 180.02562 * 10 9 7 13 13 C 1.50699 * 109.46922 * 179.97438 * 12 10 9 14 14 C 1.38341 * 120.01263 * 269.72402 * 13 12 10 15 15 Cl 1.73600 * 120.00443 * 0.02562 * 14 13 12 16 16 C 1.38359 * 119.98399 * 179.75117 * 14 13 12 17 17 C 1.38219 * 120.01214 * 0.54512 * 16 14 13 18 18 C 1.38218 * 120.03050 * 359.70983 * 17 16 14 19 19 C 1.38329 * 120.01363 * 90.00307 * 13 12 10 20 20 Cl 1.73595 * 120.00442 * 359.97438 * 19 13 12 21 21 C 1.46508 * 120.00084 * 223.97403 * 9 7 2 22 22 C 1.53002 * 117.49453 * 5.29030 * 21 9 7 23 23 C 1.53004 * 60.00148 * 252.51359 * 22 21 9 24 24 H 0.96999 * 120.00014 * 185.99251 * 1 2 3 25 25 H 1.08995 * 109.47434 * 300.00141 * 12 10 9 26 26 H 1.09001 * 109.47130 * 60.00236 * 12 10 9 27 27 H 1.07997 * 119.99227 * 180.30337 * 16 14 13 28 28 H 1.08001 * 119.98556 * 179.72462 * 17 16 14 29 29 H 1.07993 * 119.99895 * 179.97438 * 18 17 16 30 30 H 1.08999 * 115.55190 * 150.99993 * 21 9 7 31 31 H 1.08996 * 117.49764 * 0.02562 * 22 21 9 32 32 H 1.08999 * 117.49659 * 145.02224 * 22 21 9 33 33 H 1.08998 * 117.50051 * 252.51877 * 23 22 21 34 34 H 1.09000 * 117.51908 * 107.48332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2832 2.7465 -0.0006 5 1 3.1018 1.6964 1.2125 6 1 3.1020 1.6962 -1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0251 -1.2402 0.3644 9 7 1.4044 -2.3440 -0.4610 10 6 0.6815 -2.3109 -1.5980 11 8 0.5654 -1.2718 -2.2128 12 6 0.0165 -3.5647 -2.1050 13 6 -0.7236 -3.2597 -3.3818 14 6 -2.0472 -2.8600 -3.3358 15 17 -2.8558 -2.7092 -1.8070 16 6 -2.7246 -2.5752 -4.5081 17 6 -2.0825 -2.7006 -5.7256 18 6 -0.7616 -3.1050 -5.7725 19 6 -0.0814 -3.3847 -4.6006 20 17 1.5776 -3.8925 -4.6596 21 6 1.5440 -3.5990 0.2819 22 6 2.2712 -3.5465 1.6271 23 6 2.9498 -4.1883 0.4152 24 1 -0.4850 -0.8354 0.0877 25 1 0.7733 -4.3255 -2.2961 26 1 -0.6863 -3.9312 -1.3568 27 1 -3.7565 -2.2584 -4.4720 28 1 -2.6130 -2.4824 -6.6407 29 1 -0.2605 -3.2032 -6.7241 30 1 0.7126 -4.2973 0.1858 31 1 2.6452 -2.5782 1.9594 32 1 1.9181 -4.2102 2.4163 33 1 3.0430 -5.2743 0.4071 34 1 3.7705 -3.6425 -0.0502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:06 Heat of formation + Delta-G solvation = -5.566726 kcal Electronic energy + Delta-G solvation = -21881.587479 eV Core-core repulsion = 18445.659450 eV Total energy + Delta-G solvation = -3435.928028 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.038 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09733 -40.04348 -37.86010 -37.74750 -37.23913 -35.05751 -33.87052 -32.59493 -31.60532 -29.02231 -26.31497 -23.84198 -23.46558 -23.09570 -22.77394 -21.11274 -18.69636 -18.25281 -18.06476 -17.32013 -16.81973 -16.20258 -15.89539 -15.51120 -15.41154 -15.33622 -14.96887 -14.44041 -14.30408 -13.92013 -13.34881 -13.28245 -13.08294 -12.98509 -12.67853 -12.45582 -12.31062 -12.09091 -11.99807 -11.87255 -11.84553 -11.82404 -11.70649 -11.33283 -10.66788 -10.13034 -9.72052 -9.71615 -9.27245 -8.48209 -5.99859 -0.00327 0.05777 0.87182 1.29186 1.47896 1.59879 1.75936 2.15264 2.37324 2.52510 3.01194 3.08287 3.34828 3.53278 3.79375 3.87940 3.98857 4.04879 4.18772 4.21399 4.31984 4.38496 4.42061 4.49105 4.65857 4.80336 4.95277 5.09357 5.12218 5.18861 5.18933 5.39546 5.61844 5.79006 6.26140 6.89162 7.22233 7.57590 8.19481 8.77418 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.006196 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.657339 B = 4517.831322 C = 4922.348848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C -0.004 4.004 3 Si 1.110 2.890 4 H -0.288 1.288 5 H -0.259 1.259 6 H -0.289 1.289 7 C -0.433 4.433 8 H 0.063 0.937 9 N -0.449 5.449 10 C 0.474 3.526 11 O -0.576 6.576 12 C -0.095 4.095 13 C -0.060 4.060 14 C -0.034 4.034 15 Cl -0.068 7.068 16 C -0.110 4.110 17 C -0.089 4.089 18 C -0.107 4.107 19 C -0.032 4.032 20 Cl -0.064 7.064 21 C 0.035 3.965 22 C -0.167 4.167 23 C -0.177 4.177 24 H 0.258 0.742 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.160 0.840 28 H 0.184 0.816 29 H 0.165 0.835 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 -11.459 -8.370 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.212 4.212 3 Si 0.933 3.067 4 H -0.213 1.213 5 H -0.184 1.184 6 H -0.216 1.216 7 C -0.559 4.559 8 H 0.081 0.919 9 N -0.170 5.170 10 C 0.263 3.737 11 O -0.457 6.457 12 C -0.135 4.135 13 C -0.062 4.062 14 C -0.061 4.061 15 Cl -0.039 7.039 16 C -0.129 4.129 17 C -0.107 4.107 18 C -0.126 4.126 19 C -0.059 4.059 20 Cl -0.035 7.035 21 C -0.070 4.070 22 C -0.204 4.204 23 C -0.216 4.216 24 H 0.068 0.932 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.178 0.822 28 H 0.201 0.799 29 H 0.183 0.817 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.679 -9.335 -8.595 13.212 hybrid contribution 0.358 -1.564 0.621 1.720 sum -3.321 -10.899 -7.974 13.907 Atomic orbital electron populations 1.70651 1.08216 1.30223 1.41373 1.27264 0.96165 1.05128 0.92617 0.83010 0.74320 0.72069 0.77330 1.21334 1.18400 1.21557 1.19801 0.98281 0.88117 1.49745 0.91900 1.43115 1.47413 1.07436 1.19038 1.20341 0.82830 0.89576 0.80915 1.90580 1.62922 1.34000 1.58223 1.20663 1.00121 0.97715 0.95030 1.19169 0.92721 1.00085 0.94257 1.20908 0.92871 1.04064 0.88238 1.98368 1.78549 1.96230 1.30731 1.21478 1.01875 0.99185 0.90347 1.21489 0.93495 0.97194 0.98516 1.21486 0.95344 0.98556 0.97199 1.20839 0.86378 1.04137 0.94510 1.98351 1.17403 1.89139 1.98579 1.22098 0.96313 0.89849 0.98711 1.23101 1.03681 1.02371 0.91294 1.23277 0.95452 1.00848 1.01994 0.93249 0.87472 0.88437 0.82231 0.79865 0.81721 0.85852 0.90168 0.86312 0.85638 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.63 12.39 21.66 0.27 -54.36 16 2 C 0.00 -0.26 4.22 84.93 0.36 0.10 16 3 Si 1.11 53.54 29.98 68.60 2.06 55.59 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 5 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.43 -24.40 7.80 84.04 0.66 -23.75 16 8 H 0.06 3.51 7.37 -2.91 -0.02 3.49 16 9 N -0.45 -22.72 2.59 -613.09 -1.59 -24.31 16 10 C 0.47 23.99 6.44 87.66 0.56 24.55 16 11 O -0.58 -34.43 13.94 -3.07 -0.04 -34.47 16 12 C -0.10 -3.75 3.64 29.10 0.11 -3.64 16 13 C -0.06 -2.23 4.38 -19.82 -0.09 -2.31 16 14 C -0.03 -1.17 6.31 22.32 0.14 -1.03 16 15 Cl -0.07 -2.44 27.29 -2.72 -0.07 -2.51 16 16 C -0.11 -2.92 9.83 22.29 0.22 -2.70 16 17 C -0.09 -1.91 10.04 22.26 0.22 -1.69 16 18 C -0.11 -2.68 9.83 22.30 0.22 -2.46 16 19 C -0.03 -1.04 6.31 22.32 0.14 -0.89 16 20 Cl -0.06 -2.04 27.30 -2.72 -0.07 -2.11 16 21 C 0.04 1.38 5.92 44.99 0.27 1.65 16 22 C -0.17 -5.87 9.80 30.60 0.30 -5.57 16 23 C -0.18 -5.82 10.33 30.60 0.32 -5.50 16 24 H 0.26 16.40 7.43 -92.71 -0.69 15.71 16 25 H 0.11 3.82 6.87 -2.39 -0.02 3.80 16 26 H 0.10 3.63 6.31 -2.39 -0.02 3.61 16 27 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 28 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.12 4.23 6.89 -2.39 -0.02 4.22 16 31 H 0.08 3.30 6.77 -2.39 -0.02 3.28 16 32 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -75.78 319.91 5.19 -70.59 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.22 Total: 14.83 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 3.42 Total: -23.24 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -1.32 Total: -78.67 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.04 Total: -34.47 kcal Atomic # 14 Polarization: 53.54 SS G_CDS: 2.06 Total: 55.59 kcal Atomic # 17 Polarization: -4.48 SS G_CDS: -0.15 Total: -4.63 kcal Total: -75.78 5.19 -70.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.027 kcal (2) G-P(sol) polarization free energy of solvation -75.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds