Wall clock time and date at job start Tue Mar 31 2020 04:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46934 * 300.00223 * 3 2 1 6 6 H 1.48499 * 109.47042 * 60.00082 * 3 2 1 7 7 C 1.38952 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99570 * 198.21625 * 7 2 1 9 9 N 1.37099 * 120.00115 * 18.20959 * 7 2 1 10 10 C 1.34778 * 119.99553 * 44.29501 * 9 7 2 11 11 O 1.21290 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99567 * 179.97438 * 10 9 7 13 13 C 1.50702 * 109.46841 * 179.97438 * 12 10 9 14 14 C 1.38240 * 119.99184 * 264.72283 * 13 12 10 15 15 C 1.38201 * 120.02921 * 179.72889 * 14 13 12 16 16 C 1.38385 * 120.00683 * 0.54508 * 15 14 13 17 17 Cl 1.73601 * 120.00421 * 179.74852 * 16 15 14 18 18 C 1.38307 * 119.98973 * 359.72817 * 16 15 14 19 19 C 1.38339 * 119.99802 * 84.99993 * 13 12 10 20 20 Cl 1.73604 * 120.00169 * 0.02562 * 19 13 12 21 21 C 1.46497 * 120.00247 * 224.28239 * 9 7 2 22 22 C 1.53002 * 117.49676 * 3.23632 * 21 9 7 23 23 C 1.52999 * 117.50533 * 294.61109 * 21 9 7 24 24 H 0.96994 * 119.99554 * 354.92689 * 1 2 3 25 25 H 1.09005 * 109.47021 * 299.98884 * 12 10 9 26 26 H 1.08996 * 109.47657 * 59.99065 * 12 10 9 27 27 H 1.08003 * 119.98925 * 0.02562 * 14 13 12 28 28 H 1.07991 * 119.99907 * 180.27192 * 15 14 13 29 29 H 1.08002 * 120.01465 * 180.02562 * 18 16 15 30 30 H 1.09007 * 115.54794 * 148.93217 * 21 9 7 31 31 H 1.09001 * 117.50305 * 359.97438 * 22 21 9 32 32 H 1.09004 * 117.49843 * 145.02041 * 22 21 9 33 33 H 1.08991 * 117.49915 * 214.97661 * 23 21 9 34 34 H 1.09002 * 117.49243 * 359.97406 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0483 -1.2269 0.2918 9 7 1.3748 -2.3608 -0.3721 10 6 0.5784 -2.3736 -1.4593 11 8 0.4223 -1.3612 -2.1087 12 6 -0.1180 -3.6460 -1.8681 13 6 -0.9410 -3.3931 -3.1049 14 6 -2.2849 -3.0899 -2.9907 15 6 -3.0391 -2.8523 -4.1241 16 6 -2.4518 -2.9289 -5.3748 17 17 -3.4008 -2.6368 -6.7988 18 6 -1.1086 -3.2377 -5.4900 19 6 -0.3529 -3.4699 -4.3547 20 17 1.3330 -3.8584 -4.4983 21 6 1.5632 -3.5835 0.4125 22 6 2.4182 -3.4865 1.6776 23 6 2.9642 -4.1980 0.4379 24 1 -0.4849 0.8367 0.0743 25 1 0.6248 -4.4159 -2.0768 26 1 -0.7696 -3.9793 -1.0603 27 1 -2.7447 -3.0340 -2.0150 28 1 -4.0879 -2.6112 -4.0340 29 1 -0.6497 -3.2972 -6.4659 30 1 0.7137 -4.2664 0.4299 31 1 2.8409 -2.5129 1.9259 32 1 2.1314 -4.1056 2.5276 33 1 3.0364 -5.2849 0.4724 34 1 3.7457 -3.6925 -0.1295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060166967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:09 Heat of formation + Delta-G solvation = 14.768506 kcal Electronic energy + Delta-G solvation = -21420.658438 eV Core-core repulsion = 17985.612211 eV Total energy + Delta-G solvation = -3435.046227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.038 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.55613 -38.32438 -36.64665 -36.11447 -35.92362 -32.99357 -32.09445 -30.84312 -30.69759 -27.41194 -24.65889 -22.77906 -21.89889 -21.61151 -21.06566 -19.21756 -17.14574 -16.44615 -16.06334 -15.87780 -15.32390 -14.69067 -14.35179 -14.01320 -13.76018 -13.63678 -13.32965 -13.28892 -12.77853 -12.10403 -12.04063 -11.76964 -11.49013 -11.27064 -11.09772 -10.91331 -10.88976 -10.86102 -10.81876 -10.53624 -10.44361 -10.14993 -9.97341 -9.74709 -8.79599 -8.70144 -8.40092 -7.96363 -7.01682 -6.11275 -3.85694 1.20244 1.30317 1.99230 2.51301 3.29418 3.39830 3.41789 3.63696 4.12360 4.27990 4.74546 4.82232 4.86924 5.03879 5.09016 5.28302 5.39290 5.53751 5.57407 5.67644 5.75640 5.83207 5.92377 6.06987 6.08042 6.15241 6.22226 6.29048 6.45900 6.61737 6.72172 6.79439 6.92753 7.62940 8.27806 9.06751 9.16508 9.66968 10.29760 10.97963 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.004790 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.859205 B = 5843.640421 C = 6665.628349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.346 4.346 8 H 0.077 0.923 9 N -0.428 5.428 10 C 0.493 3.507 11 O -0.522 6.522 12 C -0.109 4.109 13 C -0.025 4.025 14 C -0.082 4.082 15 C -0.105 4.105 16 C -0.034 4.034 17 Cl -0.074 7.074 18 C -0.105 4.105 19 C -0.011 4.011 20 Cl -0.056 7.056 21 C 0.074 3.926 22 C -0.173 4.173 23 C -0.208 4.208 24 H 0.263 0.737 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -10.219 -5.753 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.472 4.472 8 H 0.094 0.906 9 N -0.150 5.150 10 C 0.280 3.720 11 O -0.398 6.398 12 C -0.149 4.149 13 C -0.026 4.026 14 C -0.101 4.101 15 C -0.124 4.124 16 C -0.061 4.061 17 Cl -0.045 7.045 18 C -0.125 4.125 19 C -0.038 4.038 20 Cl -0.027 7.027 21 C -0.032 4.032 22 C -0.211 4.211 23 C -0.247 4.247 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.094 -9.547 -6.312 12.155 hybrid contribution 0.417 0.820 0.024 0.920 sum -3.677 -8.727 -6.288 11.367 Atomic orbital electron populations 1.69818 1.06498 1.27214 1.43184 1.25202 0.94803 0.99249 0.94258 0.86198 0.79875 0.82807 0.77463 1.19604 1.20685 1.21230 1.18850 0.94429 0.83784 1.50178 0.90580 1.42715 1.44291 1.06760 1.21206 1.19375 0.82997 0.88083 0.81567 1.90564 1.62126 1.34151 1.52985 1.20859 0.99143 1.00268 0.94671 1.19482 0.93837 0.96105 0.93180 1.20955 0.92661 0.97727 0.98713 1.21033 1.00764 1.00259 0.90369 1.20596 0.91828 1.05677 0.87951 1.98350 1.72087 1.94727 1.39370 1.20739 0.91990 1.01274 0.98452 1.20534 0.85832 1.03606 0.93791 1.98366 1.14142 1.92098 1.98107 1.21701 0.92528 0.91618 0.97380 1.23056 1.04502 1.02479 0.91050 1.23310 0.99817 0.98467 1.03077 0.92729 0.88963 0.89310 0.84255 0.84692 0.84379 0.88111 0.87501 0.89841 0.89827 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.18 11.74 55.50 0.65 -23.53 16 2 C 0.08 2.09 4.39 -17.47 -0.08 2.01 16 3 Si 0.91 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.35 -9.26 7.92 -14.93 -0.12 -9.38 16 8 H 0.08 2.00 7.26 -52.49 -0.38 1.62 16 9 N -0.43 -10.38 2.83 -107.73 -0.31 -10.68 16 10 C 0.49 11.93 6.96 -10.98 -0.08 11.85 16 11 O -0.52 -14.82 13.79 5.55 0.08 -14.74 16 12 C -0.11 -2.01 3.96 -29.03 -0.12 -2.12 16 13 C -0.02 -0.44 4.38 -104.58 -0.46 -0.89 16 14 C -0.08 -1.31 9.68 -39.59 -0.38 -1.69 16 15 C -0.11 -1.51 9.83 -39.54 -0.39 -1.89 16 16 C -0.03 -0.49 6.32 -39.50 -0.25 -0.74 16 17 Cl -0.07 -0.93 28.96 -51.86 -1.50 -2.43 16 18 C -0.11 -1.59 9.61 -39.52 -0.38 -1.97 16 19 C -0.01 -0.18 6.31 -39.50 -0.25 -0.43 16 20 Cl -0.06 -0.93 27.40 -51.86 -1.42 -2.36 16 21 C 0.07 1.43 5.87 -67.93 -0.40 1.03 16 22 C -0.17 -3.03 9.80 -26.73 -0.26 -3.29 16 23 C -0.21 -3.46 10.36 -26.73 -0.28 -3.73 16 24 H 0.26 7.34 8.32 -40.82 -0.34 7.00 16 25 H 0.09 1.55 7.09 -51.93 -0.37 1.18 16 26 H 0.09 1.46 7.47 -51.93 -0.39 1.07 16 27 H 0.14 2.03 8.06 -52.48 -0.42 1.61 16 28 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 29 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.10 1.70 6.96 -51.93 -0.36 1.34 16 31 H 0.11 2.09 6.72 -51.93 -0.35 1.74 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -31.60 323.44 -9.61 -41.20 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -3.52 Total: 2.04 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -3.43 Total: -11.26 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.35 Total: -34.22 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.08 Total: -14.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -2.92 Total: -4.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.60 -9.61 -41.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060166967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.972 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds