Wall clock time and date at job start Tue Mar 31 2020 04:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46934 * 300.00223 * 3 2 1 6 6 H 1.48499 * 109.47042 * 60.00082 * 3 2 1 7 7 C 1.38952 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99570 * 198.21625 * 7 2 1 9 9 N 1.37099 * 120.00115 * 18.20959 * 7 2 1 10 10 C 1.34778 * 119.99553 * 44.29501 * 9 7 2 11 11 O 1.21290 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99567 * 179.97438 * 10 9 7 13 13 C 1.50702 * 109.46841 * 179.97438 * 12 10 9 14 14 C 1.38240 * 119.99184 * 264.72283 * 13 12 10 15 15 C 1.38201 * 120.02921 * 179.72889 * 14 13 12 16 16 C 1.38385 * 120.00683 * 0.54508 * 15 14 13 17 17 Cl 1.73601 * 120.00421 * 179.74852 * 16 15 14 18 18 C 1.38307 * 119.98973 * 359.72817 * 16 15 14 19 19 C 1.38339 * 119.99802 * 84.99993 * 13 12 10 20 20 Cl 1.73604 * 120.00169 * 0.02562 * 19 13 12 21 21 C 1.46497 * 120.00247 * 224.28239 * 9 7 2 22 22 C 1.53002 * 117.49676 * 3.23632 * 21 9 7 23 23 C 1.52999 * 117.50533 * 294.61109 * 21 9 7 24 24 H 0.96994 * 119.99554 * 354.92689 * 1 2 3 25 25 H 1.09005 * 109.47021 * 299.98884 * 12 10 9 26 26 H 1.08996 * 109.47657 * 59.99065 * 12 10 9 27 27 H 1.08003 * 119.98925 * 0.02562 * 14 13 12 28 28 H 1.07991 * 119.99907 * 180.27192 * 15 14 13 29 29 H 1.08002 * 120.01465 * 180.02562 * 18 16 15 30 30 H 1.09007 * 115.54794 * 148.93217 * 21 9 7 31 31 H 1.09001 * 117.50305 * 359.97438 * 22 21 9 32 32 H 1.09004 * 117.49843 * 145.02041 * 22 21 9 33 33 H 1.08991 * 117.49915 * 214.97661 * 23 21 9 34 34 H 1.09002 * 117.49243 * 359.97406 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0483 -1.2269 0.2918 9 7 1.3748 -2.3608 -0.3721 10 6 0.5784 -2.3736 -1.4593 11 8 0.4223 -1.3612 -2.1087 12 6 -0.1180 -3.6460 -1.8681 13 6 -0.9410 -3.3931 -3.1049 14 6 -2.2849 -3.0899 -2.9907 15 6 -3.0391 -2.8523 -4.1241 16 6 -2.4518 -2.9289 -5.3748 17 17 -3.4008 -2.6368 -6.7988 18 6 -1.1086 -3.2377 -5.4900 19 6 -0.3529 -3.4699 -4.3547 20 17 1.3330 -3.8584 -4.4983 21 6 1.5632 -3.5835 0.4125 22 6 2.4182 -3.4865 1.6776 23 6 2.9642 -4.1980 0.4379 24 1 -0.4849 0.8367 0.0743 25 1 0.6248 -4.4159 -2.0768 26 1 -0.7696 -3.9793 -1.0603 27 1 -2.7447 -3.0340 -2.0150 28 1 -4.0879 -2.6112 -4.0340 29 1 -0.6497 -3.2972 -6.4659 30 1 0.7137 -4.2664 0.4299 31 1 2.8409 -2.5129 1.9259 32 1 2.1314 -4.1056 2.5276 33 1 3.0364 -5.2849 0.4724 34 1 3.7457 -3.6925 -0.1295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060166967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:09 Heat of formation + Delta-G solvation = -1.660671 kcal Electronic energy + Delta-G solvation = -21421.370861 eV Core-core repulsion = 17985.612211 eV Total energy + Delta-G solvation = -3435.758649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.038 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92246 -39.89005 -37.85156 -37.59207 -37.22104 -34.82638 -33.58263 -32.65012 -31.89654 -28.91785 -26.49640 -23.97157 -23.33683 -22.95397 -22.58982 -20.95111 -18.43567 -18.15019 -17.75146 -17.15756 -16.80630 -16.40974 -15.86879 -15.57522 -15.10136 -15.05711 -14.77654 -14.59476 -14.31613 -13.69619 -13.40965 -13.23329 -12.96544 -12.88911 -12.73777 -12.60833 -12.34078 -12.15936 -12.09564 -11.98936 -11.94950 -11.79892 -11.60861 -11.17604 -10.70125 -10.02656 -9.87881 -9.52060 -8.90337 -8.16697 -5.92635 -0.01552 0.11125 0.83321 1.30054 1.35032 1.43235 1.49526 2.27406 2.42990 2.47446 3.15158 3.21102 3.40700 3.68528 3.72478 3.95745 4.15216 4.17378 4.21063 4.31531 4.35156 4.51671 4.61663 4.70348 4.71754 4.93149 4.93425 5.07477 5.12110 5.31934 5.36768 5.50357 5.54077 5.58717 6.25189 7.09162 7.26560 7.77094 8.43805 8.91783 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.004790 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.859205 B = 5843.640421 C = 6665.628349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.028 3.972 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.351 4.351 8 H 0.072 0.928 9 N -0.446 5.446 10 C 0.484 3.516 11 O -0.574 6.574 12 C -0.094 4.094 13 C -0.049 4.049 14 C -0.091 4.091 15 C -0.102 4.102 16 C -0.035 4.035 17 Cl -0.054 7.054 18 C -0.109 4.109 19 C -0.025 4.025 20 Cl -0.062 7.062 21 C 0.045 3.955 22 C -0.170 4.170 23 C -0.183 4.183 24 H 0.258 0.742 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 -11.739 -5.756 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.198 1.198 7 C -0.478 4.478 8 H 0.090 0.910 9 N -0.167 5.167 10 C 0.273 3.727 11 O -0.454 6.454 12 C -0.134 4.134 13 C -0.051 4.051 14 C -0.109 4.109 15 C -0.121 4.121 16 C -0.062 4.062 17 Cl -0.025 7.025 18 C -0.128 4.128 19 C -0.052 4.052 20 Cl -0.033 7.033 21 C -0.060 4.060 22 C -0.208 4.208 23 C -0.222 4.222 24 H 0.067 0.933 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.166 0.834 28 H 0.179 0.821 29 H 0.172 0.828 30 H 0.146 0.854 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.431 -11.103 -6.283 13.505 hybrid contribution 0.538 1.229 -0.034 1.342 sum -3.892 -9.875 -6.317 12.352 Atomic orbital electron populations 1.69909 1.07625 1.27243 1.45428 1.25887 0.95457 1.01986 0.94500 0.85408 0.79347 0.79668 0.76990 1.18556 1.22483 1.19843 1.19010 0.94474 0.85240 1.49105 0.91024 1.42955 1.44092 1.07624 1.22062 1.20237 0.82423 0.89275 0.80808 1.90518 1.63837 1.36516 1.54547 1.20694 0.99471 0.97461 0.95798 1.19570 0.94624 0.97848 0.93041 1.21159 0.92337 0.97595 0.99820 1.21326 1.01907 0.99031 0.89789 1.20741 0.91842 1.04741 0.88865 1.98358 1.71442 1.94526 1.38209 1.20948 0.92370 1.00818 0.98670 1.20696 0.85793 1.04413 0.94306 1.98354 1.14626 1.92180 1.98110 1.22041 0.94936 0.90586 0.98401 1.23098 1.03666 1.02022 0.92012 1.23310 0.97056 1.00412 1.01425 0.93324 0.87469 0.87333 0.83383 0.82094 0.82846 0.85398 0.90239 0.86460 0.85826 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.49 11.74 21.66 0.25 -51.23 16 2 C 0.03 1.58 4.39 84.93 0.37 1.96 16 3 Si 0.96 45.88 29.59 68.60 2.03 47.91 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.35 -19.07 7.92 84.04 0.67 -18.41 16 8 H 0.07 3.84 7.26 -2.91 -0.02 3.82 16 9 N -0.45 -21.63 2.83 -613.12 -1.74 -23.37 16 10 C 0.48 23.51 6.96 87.66 0.61 24.12 16 11 O -0.57 -33.33 13.79 -3.06 -0.04 -33.37 16 12 C -0.09 -3.39 3.96 29.10 0.12 -3.27 16 13 C -0.05 -1.72 4.38 -19.84 -0.09 -1.80 16 14 C -0.09 -2.79 9.68 22.26 0.22 -2.58 16 15 C -0.10 -2.73 9.83 22.30 0.22 -2.51 16 16 C -0.03 -0.95 6.32 22.32 0.14 -0.81 16 17 Cl -0.05 -1.25 28.96 -2.72 -0.08 -1.33 16 18 C -0.11 -3.17 9.61 22.31 0.21 -2.96 16 19 C -0.03 -0.84 6.31 22.32 0.14 -0.70 16 20 Cl -0.06 -2.03 27.40 -2.72 -0.07 -2.10 16 21 C 0.05 1.67 5.87 44.99 0.26 1.94 16 22 C -0.17 -5.63 9.80 30.60 0.30 -5.34 16 23 C -0.18 -5.64 10.36 30.60 0.32 -5.33 16 24 H 0.26 14.83 8.32 -92.71 -0.77 14.06 16 25 H 0.11 3.45 7.09 -2.38 -0.02 3.44 16 26 H 0.11 3.39 7.47 -2.39 -0.02 3.37 16 27 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 28 H 0.16 3.37 8.06 -2.92 -0.02 3.35 16 29 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.13 3.96 6.96 -2.38 -0.02 3.94 16 31 H 0.08 3.08 6.72 -2.39 -0.02 3.07 16 32 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 33 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -69.83 323.44 4.97 -64.86 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.13 Total: 14.32 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 3.49 Total: -15.69 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.48 Total: -74.60 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.04 Total: -33.37 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -3.27 SS G_CDS: -0.15 Total: -3.43 kcal Total: -69.83 4.97 -64.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060166967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.198 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds