Wall clock time and date at job start Tue Mar 31 2020 04:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99896 * 2 1 4 4 O 1.20832 * 120.00040 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00140 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47185 * 299.99781 * 5 3 2 7 7 N 1.46508 * 109.47163 * 179.97438 * 5 3 2 8 8 C 1.36933 * 119.99487 * 84.99859 * 7 5 3 9 9 H 1.07994 * 120.00796 * 359.97438 * 8 7 5 10 10 C 1.38822 * 119.99443 * 179.97438 * 8 7 5 11 11 N 1.31613 * 119.99939 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99775 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47291 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47081 * 120.00280 * 12 10 8 15 15 H 1.48507 * 109.47209 * 240.00130 * 12 10 8 16 16 C 1.50706 * 109.47033 * 59.99879 * 5 3 2 17 17 C 1.38246 * 119.98595 * 259.99626 * 16 5 3 18 18 C 1.38215 * 120.00664 * 180.02562 * 17 16 5 19 19 C 1.38330 * 119.99152 * 359.97438 * 18 17 16 20 20 Br 1.89100 * 120.00875 * 179.97438 * 19 18 17 21 21 C 1.38320 * 119.97711 * 0.27274 * 19 18 17 22 22 C 1.38218 * 119.99430 * 359.46849 * 21 19 18 23 23 H 1.08999 * 109.47067 * 60.00954 * 1 2 3 24 24 H 1.09003 * 109.46701 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47228 * 300.00312 * 1 2 3 26 26 H 0.96997 * 119.99934 * 265.00184 * 7 5 3 27 27 H 0.97001 * 120.00153 * 179.97438 * 11 10 8 28 28 H 1.07998 * 119.99777 * 0.02620 * 17 16 5 29 29 H 1.07998 * 120.00665 * 180.02562 * 18 17 16 30 30 H 1.08005 * 120.00516 * 179.70850 * 21 19 18 31 31 H 1.07997 * 120.00216 * 180.27935 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7807 0.8892 7 7 3.9816 2.6799 -0.0011 8 6 4.0770 3.3660 1.1801 9 1 3.8457 2.8717 2.1120 10 6 4.4711 4.6971 1.1797 11 7 4.7525 5.2997 0.0440 12 14 4.6019 5.6329 2.7910 13 1 4.2348 4.7355 3.9159 14 1 5.9959 6.1106 2.9742 15 1 3.6794 6.7964 2.7641 16 6 4.1046 0.5920 -1.2314 17 6 4.5992 -0.6961 -1.1464 18 6 5.0936 -1.3227 -2.2748 19 6 5.0929 -0.6608 -3.4895 20 35 5.7698 -1.5173 -5.0336 21 6 4.6026 0.6299 -3.5730 22 6 4.1035 1.2538 -2.4452 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 4.1890 3.1240 -0.8381 27 1 5.0275 6.2299 0.0436 28 1 4.5993 -1.2130 -0.1981 29 1 5.4796 -2.3291 -2.2085 30 1 4.6062 1.1487 -4.5203 31 1 3.7165 2.2598 -2.5112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069898681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:06 Heat of formation + Delta-G solvation = -58.827001 kcal Electronic energy + Delta-G solvation = -17992.088306 eV Core-core repulsion = 14898.713888 eV Total energy + Delta-G solvation = -3093.374418 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51324 -40.16069 -37.58214 -36.50470 -34.29668 -32.56123 -32.04770 -30.59553 -28.95631 -27.26207 -25.32289 -23.71358 -22.98622 -21.34552 -19.60095 -18.60861 -17.66683 -17.65261 -17.14698 -16.64706 -16.20198 -15.88876 -15.36508 -14.96911 -14.55052 -14.40061 -14.25869 -14.05459 -13.40209 -13.09760 -12.94700 -12.85760 -12.37503 -12.18630 -12.08942 -11.94429 -11.83299 -11.66661 -11.57148 -11.23894 -11.02918 -9.97961 -9.58535 -9.28128 -8.04551 -5.36616 0.02613 0.35323 0.62440 1.37829 1.44963 1.47262 1.56956 1.90089 2.48024 2.66041 3.35232 3.65086 3.72340 3.85681 3.97706 4.20683 4.30708 4.34845 4.37487 4.42208 4.59347 4.68983 4.71853 5.00671 5.19357 5.20813 5.40676 5.48779 5.55454 5.80906 6.12722 6.97276 7.22356 7.81995 8.08255 9.18097 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.004180 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.652636 B = 6696.233491 C = 7873.227077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.429 3.571 4 O -0.532 6.532 5 C 0.221 3.779 6 H 0.117 0.883 7 N -0.696 5.696 8 C -0.253 4.253 9 H 0.081 0.919 10 C -0.061 4.061 11 N -0.961 5.961 12 Si 0.976 3.024 13 H -0.263 1.263 14 H -0.285 1.285 15 H -0.296 1.296 16 C -0.072 4.072 17 C -0.088 4.088 18 C -0.084 4.084 19 C -0.096 4.096 20 Br -0.043 7.043 21 C -0.092 4.092 22 C -0.115 4.115 23 H 0.049 0.951 24 H 0.136 0.864 25 H 0.052 0.948 26 H 0.382 0.618 27 H 0.255 0.745 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 -19.173 -7.907 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.268 3.732 4 O -0.420 6.420 5 C 0.107 3.893 6 H 0.134 0.866 7 N -0.334 5.334 8 C -0.384 4.384 9 H 0.099 0.901 10 C -0.254 4.254 11 N -0.610 5.610 12 Si 0.804 3.196 13 H -0.187 1.187 14 H -0.212 1.212 15 H -0.224 1.224 16 C -0.073 4.073 17 C -0.107 4.107 18 C -0.104 4.104 19 C -0.175 4.175 20 Br 0.042 6.958 21 C -0.112 4.112 22 C -0.134 4.134 23 H 0.068 0.932 24 H 0.154 0.846 25 H 0.070 0.930 26 H 0.217 0.783 27 H 0.064 0.936 28 H 0.180 0.820 29 H 0.181 0.819 30 H 0.160 0.840 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.065 -19.121 -8.301 20.845 hybrid contribution -0.599 1.769 0.678 1.987 sum -0.534 -17.352 -7.623 18.960 Atomic orbital electron populations 1.23433 0.76511 1.05282 1.01539 1.86576 1.23852 1.33438 1.83967 1.26684 0.94482 0.81070 0.70968 1.90615 1.67426 1.38104 1.45856 1.19098 0.84967 0.87194 0.98024 0.86585 1.42534 1.76591 1.07034 1.07204 1.19607 1.38002 0.93909 0.86873 0.90142 1.25613 1.01742 0.97734 1.00338 1.69812 1.52724 1.11958 1.26457 0.85055 0.76984 0.78293 0.79239 1.18731 1.21205 1.22367 1.19832 0.98930 0.95434 0.93115 1.21264 0.96479 0.92672 1.00251 1.21360 0.98054 1.00977 0.89971 1.21927 1.05534 0.96384 0.93685 1.96679 1.85549 1.78768 1.34777 1.21128 0.97447 0.93613 0.99029 1.20995 0.99986 0.99678 0.92742 0.93195 0.84593 0.92965 0.78321 0.93594 0.81982 0.81910 0.84036 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -11.77 10.48 -51.40 -0.54 -12.31 16 3 C 0.43 17.44 7.27 71.23 0.52 17.96 16 4 O -0.53 -26.38 16.09 21.95 0.35 -26.03 16 5 C 0.22 8.69 3.00 43.50 0.13 8.82 16 6 H 0.12 4.12 7.94 -2.38 -0.02 4.10 16 7 N -0.70 -34.95 4.59 -330.07 -1.52 -36.47 16 8 C -0.25 -13.94 9.81 84.04 0.82 -13.11 16 9 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 10 C -0.06 -3.48 5.50 84.87 0.47 -3.01 16 11 N -0.96 -58.48 13.06 21.65 0.28 -58.20 16 12 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 13 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 15 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 16 C -0.07 -2.36 4.88 -19.86 -0.10 -2.46 16 17 C -0.09 -2.18 9.67 22.27 0.22 -1.97 16 18 C -0.08 -1.85 9.79 22.29 0.22 -1.63 16 19 C -0.10 -2.35 6.22 22.31 0.14 -2.21 16 20 Br -0.04 -0.89 33.70 -20.37 -0.69 -1.57 16 21 C -0.09 -2.60 9.79 22.28 0.22 -2.38 16 22 C -0.11 -3.89 9.05 22.27 0.20 -3.69 16 23 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 24 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 26 H 0.38 20.58 6.06 -92.71 -0.56 20.02 16 27 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.16 3.09 8.04 -2.91 -0.02 3.07 16 29 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.11 4.23 6.92 -2.91 -0.02 4.21 16 Total: -1.00 -69.04 299.95 4.55 -64.49 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.60 Total: 23.96 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 4.03 Total: -1.83 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -1.23 Total: -94.66 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.19 Total: -38.34 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.69 Total: -1.57 kcal Total: -69.04 4.55 -64.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069898681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.660 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds