Wall clock time and date at job start Tue Mar 31 2020 04:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00102 * 2 1 4 4 O 1.20827 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00242 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46959 * 60.00359 * 5 3 2 7 7 N 1.46499 * 109.47060 * 180.02562 * 5 3 2 8 8 C 1.36943 * 119.99899 * 275.00058 * 7 5 3 9 9 H 1.07999 * 119.99910 * 359.97438 * 8 7 5 10 10 C 1.38807 * 119.99996 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00158 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00037 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47189 * 59.99289 * 12 10 8 14 14 H 1.48498 * 109.47253 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47290 * 299.99501 * 12 10 8 16 16 C 1.50701 * 109.47269 * 300.00444 * 5 3 2 17 17 C 1.38242 * 119.98907 * 279.72441 * 16 5 3 18 18 C 1.38223 * 120.01097 * 179.76550 * 17 16 5 19 19 C 1.38323 * 119.98586 * 0.50927 * 18 17 16 20 20 Br 1.89100 * 120.00935 * 179.76664 * 19 18 17 21 21 C 1.38325 * 119.98018 * 359.74550 * 19 18 17 22 22 C 1.38221 * 119.99232 * 359.97438 * 21 19 18 23 23 H 1.08999 * 109.46796 * 299.99226 * 1 2 3 24 24 H 1.09000 * 109.47771 * 59.99189 * 1 2 3 25 25 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 26 26 H 0.96998 * 120.00630 * 95.00405 * 7 5 3 27 27 H 0.97001 * 119.99843 * 180.02562 * 11 10 8 28 28 H 1.08002 * 119.99771 * 0.02562 * 17 16 5 29 29 H 1.07996 * 120.00646 * 180.23152 * 18 17 16 30 30 H 1.08005 * 120.00325 * 179.97438 * 21 19 18 31 31 H 1.08004 * 119.99361 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8909 7 7 3.9816 2.6798 0.0002 8 6 4.0761 3.3665 -1.1809 9 1 3.8448 2.8722 -2.1129 10 6 4.4701 4.6974 -1.1803 11 7 4.7525 5.2997 -0.0445 12 14 4.5983 5.6343 -2.7912 13 1 3.2725 5.6529 -3.4599 14 1 5.0351 7.0275 -2.5202 15 1 5.5887 4.9675 -3.6742 16 6 4.1057 0.5914 1.2295 17 6 4.1111 1.2548 2.4423 18 6 4.6012 0.6266 3.5718 19 6 5.0961 -0.6622 3.4862 20 35 5.7728 -1.5198 5.0297 21 6 5.0953 -1.3237 2.2714 22 6 4.5996 -0.6968 1.1436 23 1 -0.3633 0.5137 0.8901 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 4.1897 3.1236 0.8371 27 1 5.0275 6.2299 -0.0441 28 1 3.7284 2.2626 2.5082 29 1 4.6020 1.1436 4.5199 30 1 5.4819 -2.3299 2.2040 31 1 4.5986 -1.2134 0.1951 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069898684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:10 Heat of formation + Delta-G solvation = -40.162274 kcal Electronic energy + Delta-G solvation = -17991.223371 eV Core-core repulsion = 14898.658317 eV Total energy + Delta-G solvation = -3092.565054 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.99989 -38.89019 -36.01711 -34.80178 -32.68138 -31.11385 -30.89863 -29.13074 -27.69488 -25.73503 -23.53880 -22.46545 -21.69330 -19.86021 -17.77912 -17.08976 -16.22656 -16.08386 -15.69759 -15.18118 -14.91672 -14.35354 -13.75178 -13.40330 -13.31501 -13.10225 -12.86471 -12.69249 -12.00980 -11.64546 -11.29313 -11.03756 -10.92003 -10.89865 -10.71129 -10.28258 -10.23930 -10.21867 -9.97660 -9.88440 -9.14030 -8.85538 -8.40379 -7.31437 -5.96761 -3.27430 1.19907 1.48326 1.67933 3.00179 3.25951 3.41576 3.42341 3.43125 3.81275 4.45378 4.90716 5.00676 5.03820 5.35076 5.39723 5.43849 5.49012 5.52079 5.65591 5.70741 5.81626 5.91152 5.94989 6.17073 6.32076 6.38588 6.76096 6.94155 7.04519 7.51923 8.16168 8.57298 9.30603 9.73334 10.09379 11.24218 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.004180 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.193671 B = 6696.864636 C = 7873.618279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.418 3.582 4 O -0.486 6.486 5 C 0.223 3.777 6 H 0.100 0.900 7 N -0.676 5.676 8 C -0.256 4.256 9 H 0.075 0.925 10 C 0.003 3.997 11 N -0.921 5.921 12 Si 0.915 3.085 13 H -0.283 1.283 14 H -0.288 1.288 15 H -0.282 1.282 16 C -0.053 4.053 17 C -0.096 4.096 18 C -0.090 4.090 19 C -0.094 4.094 20 Br -0.066 7.066 21 C -0.093 4.093 22 C -0.095 4.095 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.393 0.607 27 H 0.261 0.739 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -16.157 8.156 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.289 6.289 3 C 0.255 3.745 4 O -0.369 6.369 5 C 0.107 3.893 6 H 0.118 0.882 7 N -0.315 5.315 8 C -0.386 4.386 9 H 0.093 0.907 10 C -0.195 4.195 11 N -0.566 5.566 12 Si 0.745 3.255 13 H -0.209 1.209 14 H -0.214 1.214 15 H -0.208 1.208 16 C -0.055 4.055 17 C -0.115 4.115 18 C -0.109 4.109 19 C -0.174 4.174 20 Br 0.019 6.981 21 C -0.113 4.113 22 C -0.114 4.114 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.230 0.770 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.063 -15.998 8.565 18.147 hybrid contribution -0.463 1.094 -0.888 1.483 sum -0.526 -14.904 7.677 16.773 Atomic orbital electron populations 1.23063 0.78989 1.02324 1.01812 1.86646 1.21688 1.35800 1.84816 1.27094 0.94310 0.80934 0.72187 1.90625 1.66395 1.36461 1.43460 1.18913 0.85580 0.89072 0.95707 0.88240 1.42468 1.75287 1.05228 1.08475 1.19166 1.40055 0.93576 0.85782 0.90681 1.24812 1.00709 0.96592 0.97398 1.69651 1.50188 1.12160 1.24617 0.86163 0.78009 0.78959 0.82405 1.20893 1.21395 1.20790 1.19983 0.96979 0.94013 0.94520 1.21127 0.98552 1.00361 0.91490 1.21042 0.97660 0.92916 0.99318 1.21693 1.06518 0.96804 0.92335 1.96647 1.85969 1.79458 1.36013 1.20991 0.99493 0.99866 0.90966 1.20992 0.97854 0.94069 0.98534 0.92793 0.92655 0.89239 0.77035 0.92903 0.84614 0.85136 0.85164 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.39 10.48 -39.26 -0.41 -6.80 16 3 C 0.42 8.54 7.28 36.01 0.26 8.80 16 4 O -0.49 -11.79 16.09 -18.75 -0.30 -12.09 16 5 C 0.22 4.40 3.00 -70.23 -0.21 4.19 16 6 H 0.10 1.82 7.94 -51.93 -0.41 1.41 16 7 N -0.68 -16.51 4.59 -55.69 -0.26 -16.77 16 8 C -0.26 -6.91 9.81 -15.06 -0.15 -7.06 16 9 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 10 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 11 N -0.92 -26.96 13.06 55.49 0.72 -26.24 16 12 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 C -0.05 -0.90 4.88 -104.62 -0.51 -1.41 16 17 C -0.10 -1.60 9.05 -39.59 -0.36 -1.96 16 18 C -0.09 -1.29 9.79 -39.56 -0.39 -1.68 16 19 C -0.09 -1.27 6.22 -39.52 -0.25 -1.51 16 20 Br -0.07 -0.77 33.70 -68.01 -2.29 -3.06 16 21 C -0.09 -1.19 9.79 -39.56 -0.39 -1.58 16 22 C -0.10 -1.32 9.67 -39.59 -0.38 -1.70 16 23 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 24 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.39 10.05 6.05 -40.82 -0.25 9.80 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.14 2.45 6.90 -52.49 -0.36 2.08 16 29 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 31 H 0.13 1.56 8.04 -52.48 -0.42 1.13 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -31.08 299.93 -7.54 -38.62 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.10 Total: 7.34 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.40 Total: -2.41 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.47 Total: -43.00 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.71 Total: -18.90 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.08 -7.54 -38.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069898684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.541 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds