Wall clock time and date at job start Tue Mar 31 2020 04:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00102 * 2 1 4 4 O 1.20827 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00242 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46959 * 60.00359 * 5 3 2 7 7 N 1.46499 * 109.47060 * 180.02562 * 5 3 2 8 8 C 1.36943 * 119.99899 * 275.00058 * 7 5 3 9 9 H 1.07999 * 119.99910 * 359.97438 * 8 7 5 10 10 C 1.38807 * 119.99996 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00158 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00037 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47189 * 59.99289 * 12 10 8 14 14 H 1.48498 * 109.47253 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47290 * 299.99501 * 12 10 8 16 16 C 1.50701 * 109.47269 * 300.00444 * 5 3 2 17 17 C 1.38242 * 119.98907 * 279.72441 * 16 5 3 18 18 C 1.38223 * 120.01097 * 179.76550 * 17 16 5 19 19 C 1.38323 * 119.98586 * 0.50927 * 18 17 16 20 20 Br 1.89100 * 120.00935 * 179.76664 * 19 18 17 21 21 C 1.38325 * 119.98018 * 359.74550 * 19 18 17 22 22 C 1.38221 * 119.99232 * 359.97438 * 21 19 18 23 23 H 1.08999 * 109.46796 * 299.99226 * 1 2 3 24 24 H 1.09000 * 109.47771 * 59.99189 * 1 2 3 25 25 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 26 26 H 0.96998 * 120.00630 * 95.00405 * 7 5 3 27 27 H 0.97001 * 119.99843 * 180.02562 * 11 10 8 28 28 H 1.08002 * 119.99771 * 0.02562 * 17 16 5 29 29 H 1.07996 * 120.00646 * 180.23152 * 18 17 16 30 30 H 1.08005 * 120.00325 * 179.97438 * 21 19 18 31 31 H 1.08004 * 119.99361 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8909 7 7 3.9816 2.6798 0.0002 8 6 4.0761 3.3665 -1.1809 9 1 3.8448 2.8722 -2.1129 10 6 4.4701 4.6974 -1.1803 11 7 4.7525 5.2997 -0.0445 12 14 4.5983 5.6343 -2.7912 13 1 3.2725 5.6529 -3.4599 14 1 5.0351 7.0275 -2.5202 15 1 5.5887 4.9675 -3.6742 16 6 4.1057 0.5914 1.2295 17 6 4.1111 1.2548 2.4423 18 6 4.6012 0.6266 3.5718 19 6 5.0961 -0.6622 3.4862 20 35 5.7728 -1.5198 5.0297 21 6 5.0953 -1.3237 2.2714 22 6 4.5996 -0.6968 1.1436 23 1 -0.3633 0.5137 0.8901 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 4.1897 3.1236 0.8371 27 1 5.0275 6.2299 -0.0441 28 1 3.7284 2.2626 2.5082 29 1 4.6020 1.1436 4.5199 30 1 5.4819 -2.3299 2.2040 31 1 4.5986 -1.2134 0.1951 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069898684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:09 Heat of formation + Delta-G solvation = -58.591534 kcal Electronic energy + Delta-G solvation = -17992.022524 eV Core-core repulsion = 14898.658317 eV Total energy + Delta-G solvation = -3093.364207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51321 -40.16112 -37.58143 -36.50320 -34.29427 -32.55973 -32.04680 -30.59278 -28.95703 -27.25967 -25.31965 -23.71126 -22.98605 -21.34416 -19.59743 -18.60853 -17.66430 -17.65053 -17.14681 -16.64375 -16.20336 -15.89164 -15.35426 -14.97136 -14.55267 -14.39977 -14.25528 -14.05469 -13.39668 -13.09659 -12.93308 -12.80828 -12.37138 -12.25681 -12.11117 -11.93867 -11.84165 -11.66692 -11.55633 -11.23867 -11.01006 -9.97907 -9.58474 -9.27854 -8.03876 -5.36170 0.02680 0.35343 0.62457 1.37903 1.45590 1.49268 1.55271 1.90135 2.48568 2.66166 3.35486 3.65196 3.72518 3.85721 3.97792 4.20716 4.30799 4.34728 4.37441 4.42252 4.59384 4.69009 4.71812 5.00691 5.19412 5.20820 5.40275 5.48838 5.55506 5.80946 6.13039 6.97350 7.22668 7.82355 8.08599 9.18279 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.004180 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.193671 B = 6696.864636 C = 7873.618279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.429 3.571 4 O -0.532 6.532 5 C 0.221 3.779 6 H 0.117 0.883 7 N -0.695 5.695 8 C -0.256 4.256 9 H 0.080 0.920 10 C -0.060 4.060 11 N -0.961 5.961 12 Si 0.977 3.023 13 H -0.284 1.284 14 H -0.293 1.293 15 H -0.267 1.267 16 C -0.072 4.072 17 C -0.114 4.114 18 C -0.093 4.093 19 C -0.096 4.096 20 Br -0.043 7.043 21 C -0.084 4.084 22 C -0.088 4.088 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.136 0.864 26 H 0.382 0.618 27 H 0.255 0.745 28 H 0.109 0.891 29 H 0.142 0.858 30 H 0.163 0.837 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 -19.088 7.918 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.268 3.732 4 O -0.420 6.420 5 C 0.107 3.893 6 H 0.134 0.866 7 N -0.333 5.333 8 C -0.387 4.387 9 H 0.098 0.902 10 C -0.254 4.254 11 N -0.609 5.609 12 Si 0.804 3.196 13 H -0.210 1.210 14 H -0.219 1.219 15 H -0.192 1.192 16 C -0.073 4.073 17 C -0.134 4.134 18 C -0.112 4.112 19 C -0.175 4.175 20 Br 0.042 6.958 21 C -0.104 4.104 22 C -0.107 4.107 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.154 0.846 26 H 0.217 0.783 27 H 0.064 0.936 28 H 0.127 0.873 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.144 -19.021 8.321 20.762 hybrid contribution -0.621 1.743 -0.697 1.977 sum -0.477 -17.278 7.624 18.891 Atomic orbital electron populations 1.23431 0.76525 1.05279 1.01530 1.86576 1.23841 1.33448 1.83970 1.26698 0.94491 0.81063 0.70962 1.90614 1.67426 1.38119 1.45858 1.19094 0.84954 0.87199 0.98029 0.86595 1.42520 1.76591 1.07026 1.07202 1.19533 1.38292 0.93948 0.86879 0.90194 1.25614 1.01663 0.97716 1.00363 1.69805 1.52556 1.12014 1.26537 0.85187 0.77967 0.77422 0.78988 1.20995 1.21863 1.19245 1.19829 0.98922 0.95421 0.93143 1.20996 1.00031 0.99635 0.92732 1.21129 0.97480 0.93612 0.99001 1.21927 1.05494 0.96420 0.93685 1.96678 1.85549 1.78717 1.34828 1.21361 0.98062 1.00961 0.89986 1.21263 0.96463 0.92691 1.00248 0.93209 0.92975 0.84587 0.78314 0.93579 0.87320 0.84031 0.81910 0.81987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -11.80 10.48 -51.42 -0.54 -12.34 16 3 C 0.43 17.47 7.28 71.24 0.52 17.99 16 4 O -0.53 -26.47 16.09 21.96 0.35 -26.11 16 5 C 0.22 8.71 3.00 43.50 0.13 8.84 16 6 H 0.12 4.12 7.94 -2.39 -0.02 4.10 16 7 N -0.70 -34.98 4.59 -330.09 -1.52 -36.50 16 8 C -0.26 -14.10 9.81 84.03 0.82 -13.27 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 10 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 11 N -0.96 -58.44 13.06 21.65 0.28 -58.16 16 12 Si 0.98 45.87 29.55 68.60 2.03 47.89 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 C -0.07 -2.37 4.88 -19.86 -0.10 -2.47 16 17 C -0.11 -3.90 9.05 22.27 0.20 -3.69 16 18 C -0.09 -2.61 9.79 22.29 0.22 -2.39 16 19 C -0.10 -2.35 6.22 22.31 0.14 -2.21 16 20 Br -0.04 -0.89 33.70 -20.37 -0.69 -1.57 16 21 C -0.08 -1.86 9.79 22.29 0.22 -1.64 16 22 C -0.09 -2.19 9.67 22.26 0.22 -1.97 16 23 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 24 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 25 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.38 20.60 6.05 -92.71 -0.56 20.04 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.11 4.23 6.90 -2.91 -0.02 4.21 16 29 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.16 3.10 8.04 -2.91 -0.02 3.08 16 Total: -1.00 -69.00 299.93 4.55 -64.45 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.60 Total: 24.24 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 4.03 Total: -1.91 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -1.23 Total: -94.65 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.19 Total: -38.45 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.69 Total: -1.57 kcal Total: -69.00 4.55 -64.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069898684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.856 kcal (2) G-P(sol) polarization free energy of solvation -69.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds