Wall clock time and date at job start Tue Mar 31 2020 04:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99514 * 2 1 4 4 C 1.38307 * 110.99701 * 123.95422 * 2 1 3 5 5 N 1.32398 * 119.82036 * 304.29670 * 4 2 1 6 6 C 1.31869 * 121.78801 * 179.75309 * 5 4 2 7 7 C 1.38461 * 121.22099 * 0.53742 * 6 5 4 8 8 Br 1.89094 * 120.25438 * 179.75833 * 7 6 5 9 9 C 1.38399 * 119.49106 * 359.74218 * 7 6 5 10 10 C 1.40028 * 118.35475 * 359.97438 * 9 7 6 11 11 C 1.47319 * 120.60911 * 179.97438 * 10 9 7 12 12 O 1.21646 * 119.99856 * 185.47876 * 11 10 9 13 13 N 1.34779 * 120.00295 * 5.47775 * 11 10 9 14 14 C 1.36901 * 120.00431 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99552 * 0.02562 * 14 13 11 16 16 C 1.39014 * 120.00319 * 179.97438 * 14 13 11 17 17 N 1.31387 * 119.99789 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00223 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47202 * 60.00437 * 18 16 14 20 20 H 1.48505 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47276 * 300.00307 * 18 16 14 22 22 H 1.08995 * 109.47266 * 60.00052 * 1 2 3 23 23 H 1.08993 * 109.47138 * 299.99957 * 1 2 3 24 24 H 1.09005 * 109.46637 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47434 * 58.96895 * 3 2 1 26 26 H 1.08998 * 109.46988 * 178.96821 * 3 2 1 27 27 H 1.08998 * 109.47192 * 298.96384 * 3 2 1 28 28 H 1.08005 * 119.38501 * 180.25298 * 6 5 4 29 29 H 1.08003 * 120.82163 * 180.02562 * 9 7 6 30 30 H 0.97003 * 119.99215 * 359.97438 * 13 11 10 31 31 H 0.96995 * 119.99933 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9646 -0.7212 1.0711 5 7 1.5963 -0.4069 2.3033 6 6 2.0410 -1.0712 3.3521 7 6 2.9266 -2.1262 3.2107 8 35 3.5521 -3.0556 4.7340 9 6 3.3502 -2.4953 1.9459 10 6 2.8611 -1.7804 0.8457 11 6 3.2796 -2.1307 -0.5227 12 8 2.9278 -1.4417 -1.4614 13 7 4.0521 -3.2146 -0.7345 14 6 4.4414 -3.5399 -2.0060 15 1 4.1298 -2.9277 -2.8394 16 6 5.2387 -4.6575 -2.2245 17 7 5.6190 -5.4014 -1.2104 18 14 5.7692 -5.1018 -3.9595 19 1 6.5544 -3.9824 -4.5389 20 1 6.6080 -6.3267 -3.9223 21 1 4.5678 -5.3490 -4.7966 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6310 1.9005 0.8806 26 1 3.0848 1.3425 0.0185 27 1 1.6610 1.8890 -0.8991 28 1 1.7118 -0.7842 4.3398 29 1 4.0402 -3.3151 1.8108 30 1 4.3329 -3.7638 0.0142 31 1 6.1750 -6.1815 -1.3629 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071904532.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:04 Heat of formation + Delta-G solvation = 8.259978 kcal Electronic energy + Delta-G solvation = -18141.193608 eV Core-core repulsion = 15083.021052 eV Total energy + Delta-G solvation = -3058.172557 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.017 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.90583 -39.61065 -38.03612 -35.93770 -34.14555 -33.35637 -32.64752 -30.23055 -28.56561 -27.43756 -25.87970 -25.29843 -22.68090 -21.43483 -20.09849 -18.52814 -18.10358 -17.65734 -16.66714 -16.51502 -15.90497 -15.71207 -15.25143 -15.22966 -15.00471 -14.57465 -14.18036 -13.72543 -13.52153 -13.20628 -12.96483 -12.92989 -12.73453 -12.44225 -12.23789 -12.12188 -11.55381 -11.53606 -11.02371 -10.87939 -10.41120 -10.04110 -9.88020 -9.35513 -8.51417 -5.94161 -0.52414 -0.21515 0.37424 1.43257 1.43419 1.54334 1.97434 2.27754 2.59596 2.62143 2.96386 3.30207 3.38442 3.57463 3.80718 3.86936 4.20400 4.37712 4.44088 4.50599 4.57924 4.62314 4.78894 4.89305 4.90843 5.08060 5.38808 5.90577 5.93769 6.22071 6.52071 6.59787 7.08643 7.48024 8.07768 8.65728 Molecular weight = 313.02amu Principal moments of inertia in cm(-1) A = 0.012104 B = 0.005709 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.752895 B = 4903.277933 C = 7038.419414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.497 5.497 3 C 0.046 3.954 4 C 0.342 3.658 5 N -0.509 5.509 6 C 0.158 3.842 7 C -0.151 4.151 8 Br -0.010 7.010 9 C -0.027 4.027 10 C -0.145 4.145 11 C 0.475 3.525 12 O -0.583 6.583 13 N -0.560 5.560 14 C -0.326 4.326 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.913 5.913 18 Si 0.996 3.004 19 H -0.270 1.270 20 H -0.270 1.270 21 H -0.270 1.270 22 H 0.089 0.911 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.202 0.798 29 H 0.148 0.852 30 H 0.393 0.607 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 5.852 13.740 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.220 5.220 3 C -0.100 4.100 4 C 0.112 3.888 5 N -0.221 5.221 6 C -0.004 4.004 7 C -0.233 4.233 8 Br 0.075 6.925 9 C -0.056 4.056 10 C -0.153 4.153 11 C 0.263 3.737 12 O -0.467 6.467 13 N -0.197 5.197 14 C -0.456 4.456 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.553 5.553 18 Si 0.819 3.181 19 H -0.195 1.195 20 H -0.194 1.194 21 H -0.195 1.195 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.218 0.782 29 H 0.166 0.834 30 H 0.228 0.772 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.785 6.270 13.309 15.809 hybrid contribution 0.763 -0.888 -0.262 1.200 sum -5.021 5.382 13.047 14.980 Atomic orbital electron populations 1.22348 0.84097 1.01936 1.02393 1.59766 1.10134 1.15651 1.36434 1.22269 0.99667 0.85765 1.02264 1.19918 0.90264 0.90789 0.87781 1.68051 1.25825 1.29215 0.99039 1.23255 0.89968 0.88460 0.98726 1.22856 1.04840 1.02184 0.93415 1.96741 1.87647 1.74898 1.33239 1.21871 0.96011 0.97234 0.90437 1.20975 1.01301 0.98631 0.94438 1.17784 0.84010 0.83664 0.88276 1.90646 1.59352 1.53017 1.43735 1.41914 1.44312 1.24149 1.09287 1.19731 1.29653 1.10467 0.85725 0.89510 1.26122 0.96235 0.95224 1.03612 1.69645 1.35893 1.17109 1.32655 0.84935 0.78404 0.77916 0.76810 1.19506 1.19441 1.19536 0.89262 0.93091 0.92977 0.93350 0.93307 0.89217 0.78182 0.83435 0.77237 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 9.35 127.69 1.19 2.33 16 2 N -0.50 -17.96 2.96 -750.99 -2.22 -20.19 16 3 C 0.05 1.41 9.47 127.69 1.21 2.62 16 4 C 0.34 12.47 5.32 133.66 0.71 13.18 16 5 N -0.51 -15.44 9.64 -192.37 -1.86 -17.29 16 6 C 0.16 3.96 10.92 84.74 0.93 4.88 16 7 C -0.15 -4.11 6.24 22.36 0.14 -3.97 16 8 Br -0.01 -0.21 33.72 -20.37 -0.69 -0.90 16 9 C -0.03 -0.91 9.38 22.74 0.21 -0.70 16 10 C -0.15 -5.87 5.91 -19.88 -0.12 -5.99 16 11 C 0.48 23.79 7.70 86.63 0.67 24.46 16 12 O -0.58 -32.44 14.66 -4.18 -0.06 -32.50 16 13 N -0.56 -29.20 5.23 -310.07 -1.62 -30.82 16 14 C -0.33 -18.32 9.68 84.09 0.81 -17.51 16 15 H 0.09 5.13 7.15 -2.91 -0.02 5.11 16 16 C -0.01 -0.58 5.50 84.95 0.47 -0.11 16 17 N -0.91 -48.34 13.05 21.68 0.28 -48.06 16 18 Si 1.00 42.01 29.55 68.60 2.03 44.04 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 22 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 23 H 0.05 1.31 7.87 -2.39 -0.02 1.29 16 24 H 0.05 1.61 8.12 -2.38 -0.02 1.59 16 25 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 26 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.20 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.15 5.03 6.55 -2.91 -0.02 5.01 16 30 H 0.39 19.47 6.02 -92.71 -0.56 18.91 16 31 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -64.43 294.19 2.70 -61.73 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.61 Total: 24.81 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 6.22 Total: 19.18 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.42 Total: -116.36 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.06 Total: -32.50 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.69 Total: -0.90 kcal Total: -64.43 2.70 -61.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071904532.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.994 kcal (2) G-P(sol) polarization free energy of solvation -64.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds