Wall clock time and date at job start Tue Mar 31 2020 04:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31060 * 1 3 3 Si 1.86792 * 120.00186 * 2 1 4 4 H 1.48504 * 109.47089 * 269.99665 * 3 2 1 5 5 H 1.48493 * 109.47664 * 29.99801 * 3 2 1 6 6 H 1.48510 * 109.47315 * 150.00189 * 3 2 1 7 7 C 1.39730 * 119.99494 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99677 * 172.18281 * 7 2 1 9 9 C 1.41129 * 120.00019 * 352.18443 * 7 2 1 10 10 C 1.37450 * 123.66473 * 336.04237 * 9 7 2 11 11 S 1.70399 * 110.78760 * 180.21792 * 10 9 7 12 12 C 1.75429 * 92.66190 * 359.75672 * 11 10 9 13 13 C 1.33043 * 110.87367 * 0.02562 * 12 11 10 14 14 N 1.40382 * 123.50224 * 179.97438 * 13 12 11 15 15 C 1.39734 * 120.00002 * 114.71451 * 14 13 12 16 16 C 1.39010 * 120.08827 * 332.43847 * 15 14 13 17 17 Cl 1.73600 * 120.04221 * 0.02562 * 16 15 14 18 18 C 1.38203 * 119.91365 * 180.22820 * 16 15 14 19 19 C 1.38295 * 120.08651 * 359.51092 * 18 16 15 20 20 C 1.38293 * 120.17288 * 0.25787 * 19 18 16 21 21 C 1.38207 * 120.08426 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 120.04197 * 180.02562 * 21 20 19 23 23 H 0.97006 * 119.99327 * 0.02562 * 1 2 3 24 24 H 1.08003 * 124.60228 * 359.94031 * 10 9 7 25 25 H 1.07994 * 124.56275 * 180.02562 * 12 11 10 26 26 H 0.96999 * 119.99745 * 294.72361 * 14 13 12 27 27 H 1.08005 * 119.95847 * 179.79580 * 18 16 15 28 28 H 1.08003 * 119.91141 * 180.23176 * 19 18 16 29 29 H 1.07993 * 119.95814 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6176 0.0000 4 1 2.4922 2.0463 -1.4001 5 1 1.4422 2.6527 0.6999 6 1 3.5423 1.4401 0.7000 7 6 2.0091 -1.2102 0.0005 8 1 3.0816 -1.2146 -0.1267 9 6 1.3132 -2.4266 0.1673 10 6 0.0911 -2.5262 0.7884 11 16 -0.4443 -4.1437 0.8137 12 6 0.9843 -4.7156 -0.0287 13 6 1.8087 -3.7077 -0.3021 14 7 3.0327 -3.8674 -0.9707 15 6 3.2193 -3.2962 -2.2323 16 6 2.1300 -3.0847 -3.0696 17 17 0.5346 -3.5293 -2.5493 18 6 2.3194 -2.5239 -4.3185 19 6 3.5892 -2.1640 -4.7316 20 6 4.6748 -2.3684 -3.8996 21 6 4.4942 -2.9331 -2.6511 22 17 5.8577 -3.1885 -1.6073 23 1 -0.4849 0.8402 -0.0004 24 1 -0.4536 -1.6932 1.2076 25 1 1.1697 -5.7469 -0.2902 26 1 3.7488 -4.3743 -0.5570 27 1 1.4740 -2.3623 -4.9709 28 1 3.7334 -1.7225 -5.7066 29 1 5.6649 -2.0864 -4.2258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079669160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:25 Heat of formation + Delta-G solvation = 48.759892 kcal Electronic energy + Delta-G solvation = -19215.515739 eV Core-core repulsion = 16088.863266 eV Total energy + Delta-G solvation = -3126.652473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 312.979 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.34505 -37.00089 -36.20048 -35.48017 -34.05631 -32.36714 -30.16594 -28.99346 -27.57725 -25.27870 -22.73153 -22.19604 -21.19828 -18.53721 -17.48693 -16.84047 -16.22172 -15.98815 -15.07447 -14.67440 -14.41085 -14.00311 -13.83876 -13.40415 -12.63907 -12.24821 -12.10067 -11.84821 -11.67921 -11.37024 -11.22008 -11.19233 -10.86962 -10.68455 -10.52593 -10.47643 -10.33874 -9.73943 -9.51853 -9.28114 -9.02621 -8.27763 -7.46429 -7.05746 -6.71591 -6.44456 -4.18226 1.43131 1.66525 2.34653 2.60807 2.99988 3.05489 3.07808 3.16342 3.21530 3.80593 3.91390 4.11150 4.15207 4.23732 5.12652 5.28548 5.40621 5.50197 5.67901 5.85507 6.10540 6.26524 6.39874 6.61742 6.82668 7.03823 7.16895 7.36083 7.69989 7.98569 8.02017 8.23519 8.68116 8.95746 9.07197 10.47085 Molecular weight = 312.98amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.008318 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.074697 B = 3365.583703 C = 4293.122827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.428 4.428 8 H 0.068 0.932 9 C 0.073 3.927 10 C -0.333 4.333 11 S 0.034 5.966 12 C -0.257 4.257 13 C 0.129 3.871 14 N -0.667 5.667 15 C 0.251 3.749 16 C -0.071 4.071 17 Cl -0.029 7.029 18 C -0.074 4.074 19 C -0.158 4.158 20 C -0.076 4.076 21 C -0.095 4.095 22 Cl -0.074 7.074 23 H 0.272 0.728 24 H 0.159 0.841 25 H 0.134 0.866 26 H 0.402 0.598 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -4.978 -6.762 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.463 4.463 8 H 0.086 0.914 9 C 0.063 3.937 10 C -0.470 4.470 11 S 0.294 5.706 12 C -0.394 4.394 13 C 0.020 3.980 14 N -0.292 5.292 15 C 0.145 3.855 16 C -0.103 4.103 17 Cl 0.001 6.999 18 C -0.094 4.094 19 C -0.178 4.178 20 C -0.095 4.095 21 C -0.127 4.127 22 Cl -0.045 7.045 23 H 0.083 0.917 24 H 0.176 0.824 25 H 0.152 0.848 26 H 0.240 0.760 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.952 -5.532 -5.961 9.042 hybrid contribution 1.933 1.486 -0.307 2.458 sum 5.885 -4.046 -6.268 9.502 Atomic orbital electron populations 1.69841 1.06938 1.27848 1.38754 1.25626 0.94725 1.00382 0.93459 0.86434 0.80422 0.81633 0.78972 1.19791 1.20468 1.18899 1.18793 0.94299 0.89392 1.43789 0.91423 1.17533 0.92893 0.90545 0.92760 1.24606 1.05990 0.96342 1.20043 1.81950 1.22104 1.05041 1.61499 1.24663 1.00023 1.01334 1.13349 1.17928 0.87098 0.94457 0.98479 1.41469 1.15041 1.57542 1.15169 1.17098 0.90425 0.92455 0.85541 1.20565 0.87427 1.07818 0.94481 1.98420 1.20878 1.90857 1.89783 1.20927 0.97875 0.96441 0.94151 1.20696 0.91528 1.05052 1.00535 1.20758 0.99674 0.97445 0.91631 1.20316 0.87155 1.10469 0.94739 1.98321 1.43287 1.95661 1.67259 0.91717 0.82375 0.84845 0.76032 0.85150 0.85252 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.28 10.80 55.54 0.60 -20.68 15 2 C 0.07 1.87 5.40 -17.32 -0.09 1.78 15 3 Si 0.90 19.87 29.57 -169.99 -5.03 14.85 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.26 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.43 -11.28 8.72 -37.93 -0.33 -11.62 15 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 15 9 C 0.07 1.84 4.80 -106.34 -0.51 1.33 15 10 C -0.33 -8.42 9.64 30.45 0.29 -8.13 15 11 S 0.03 0.72 23.00 -107.50 -2.47 -1.75 15 12 C -0.26 -5.30 9.31 28.93 0.27 -5.03 15 13 C 0.13 2.83 3.69 -83.00 -0.31 2.53 15 14 N -0.67 -12.99 5.16 -7.93 -0.04 -13.03 15 15 C 0.25 4.76 6.05 -83.68 -0.51 4.25 15 16 C -0.07 -1.36 6.26 -39.31 -0.25 -1.61 15 17 Cl -0.03 -0.59 23.36 -51.86 -1.21 -1.80 15 18 C -0.07 -1.20 9.82 -39.57 -0.39 -1.59 15 19 C -0.16 -2.21 10.04 -39.54 -0.40 -2.60 15 20 C -0.08 -1.10 9.82 -39.57 -0.39 -1.49 15 21 C -0.10 -1.60 6.34 -39.30 -0.25 -1.85 15 22 Cl -0.07 -1.12 27.83 -51.86 -1.44 -2.57 15 23 H 0.27 6.71 8.30 -40.82 -0.34 6.37 15 24 H 0.16 4.34 6.35 -52.48 -0.33 4.01 15 25 H 0.13 2.46 8.06 -52.49 -0.42 2.03 15 26 H 0.40 7.03 7.97 -40.82 -0.33 6.71 15 27 H 0.13 1.84 8.06 -52.48 -0.42 1.42 15 28 H 0.13 1.39 8.06 -52.48 -0.42 0.96 15 29 H 0.13 1.53 8.06 -52.49 -0.42 1.10 15 LS Contribution 293.63 15.07 4.43 4.43 Total: -1.00 -27.32 293.63 -9.92 -37.24 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -1.90 Total: 7.33 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.85 Total: -24.02 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.56 Total: -33.71 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.47 Total: -1.75 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -2.65 Total: -4.37 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.32 -9.92 -37.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079669160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.000 kcal (2) G-P(sol) polarization free energy of solvation -27.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds