Wall clock time and date at job start Tue Mar 31 2020 04:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31060 * 1 3 3 Si 1.86792 * 120.00186 * 2 1 4 4 H 1.48504 * 109.47089 * 269.99665 * 3 2 1 5 5 H 1.48493 * 109.47664 * 29.99801 * 3 2 1 6 6 H 1.48510 * 109.47315 * 150.00189 * 3 2 1 7 7 C 1.39730 * 119.99494 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99677 * 172.18281 * 7 2 1 9 9 C 1.41129 * 120.00019 * 352.18443 * 7 2 1 10 10 C 1.37450 * 123.66473 * 336.04237 * 9 7 2 11 11 S 1.70399 * 110.78760 * 180.21792 * 10 9 7 12 12 C 1.75429 * 92.66190 * 359.75672 * 11 10 9 13 13 C 1.33043 * 110.87367 * 0.02562 * 12 11 10 14 14 N 1.40382 * 123.50224 * 179.97438 * 13 12 11 15 15 C 1.39734 * 120.00002 * 114.71451 * 14 13 12 16 16 C 1.39010 * 120.08827 * 332.43847 * 15 14 13 17 17 Cl 1.73600 * 120.04221 * 0.02562 * 16 15 14 18 18 C 1.38203 * 119.91365 * 180.22820 * 16 15 14 19 19 C 1.38295 * 120.08651 * 359.51092 * 18 16 15 20 20 C 1.38293 * 120.17288 * 0.25787 * 19 18 16 21 21 C 1.38207 * 120.08426 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 120.04197 * 180.02562 * 21 20 19 23 23 H 0.97006 * 119.99327 * 0.02562 * 1 2 3 24 24 H 1.08003 * 124.60228 * 359.94031 * 10 9 7 25 25 H 1.07994 * 124.56275 * 180.02562 * 12 11 10 26 26 H 0.96999 * 119.99745 * 294.72361 * 14 13 12 27 27 H 1.08005 * 119.95847 * 179.79580 * 18 16 15 28 28 H 1.08003 * 119.91141 * 180.23176 * 19 18 16 29 29 H 1.07993 * 119.95814 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6176 0.0000 4 1 2.4922 2.0463 -1.4001 5 1 1.4422 2.6527 0.6999 6 1 3.5423 1.4401 0.7000 7 6 2.0091 -1.2102 0.0005 8 1 3.0816 -1.2146 -0.1267 9 6 1.3132 -2.4266 0.1673 10 6 0.0911 -2.5262 0.7884 11 16 -0.4443 -4.1437 0.8137 12 6 0.9843 -4.7156 -0.0287 13 6 1.8087 -3.7077 -0.3021 14 7 3.0327 -3.8674 -0.9707 15 6 3.2193 -3.2962 -2.2323 16 6 2.1300 -3.0847 -3.0696 17 17 0.5346 -3.5293 -2.5493 18 6 2.3194 -2.5239 -4.3185 19 6 3.5892 -2.1640 -4.7316 20 6 4.6748 -2.3684 -3.8996 21 6 4.4942 -2.9331 -2.6511 22 17 5.8577 -3.1885 -1.6073 23 1 -0.4849 0.8402 -0.0004 24 1 -0.4536 -1.6932 1.2076 25 1 1.1697 -5.7469 -0.2902 26 1 3.7488 -4.3743 -0.5570 27 1 1.4740 -2.3623 -4.9709 28 1 3.7334 -1.7225 -5.7066 29 1 5.6649 -2.0864 -4.2258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079669160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:25 Heat of formation + Delta-G solvation = 35.556473 kcal Electronic energy + Delta-G solvation = -19216.088282 eV Core-core repulsion = 16088.863266 eV Total energy + Delta-G solvation = -3127.225016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 312.979 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68416 -38.58087 -37.47241 -36.89448 -35.75388 -34.07952 -31.41170 -30.59578 -29.18429 -27.15012 -24.15302 -23.51698 -22.82385 -20.24631 -18.90442 -18.51658 -17.89494 -17.47278 -16.58629 -16.30504 -15.98685 -15.25437 -15.11414 -14.78148 -14.41486 -13.97884 -13.68431 -13.17363 -13.13308 -13.00334 -12.90320 -12.68538 -12.54995 -12.30150 -12.09333 -11.86506 -11.85167 -11.30939 -11.21547 -10.96015 -10.88118 -9.55637 -9.04739 -8.86250 -8.46955 -8.17128 -6.14660 0.17287 0.37177 0.87299 1.10025 1.32492 1.35540 1.40202 1.47320 1.63855 2.00351 2.25309 2.29425 2.63275 2.80713 3.46764 3.99399 4.05765 4.37957 4.38417 4.47962 4.64544 5.04261 5.19158 5.27323 5.35818 5.41268 5.50480 5.72666 5.83037 6.10942 6.35544 6.65596 6.86666 7.05443 7.12631 8.55537 Molecular weight = 312.98amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.008318 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.074697 B = 3365.583703 C = 4293.122827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.447 4.447 8 H 0.057 0.943 9 C 0.060 3.940 10 C -0.364 4.364 11 S 0.067 5.933 12 C -0.247 4.247 13 C 0.128 3.872 14 N -0.669 5.669 15 C 0.224 3.776 16 C -0.098 4.098 17 Cl -0.055 7.055 18 C -0.083 4.083 19 C -0.142 4.142 20 C -0.072 4.072 21 C -0.104 4.104 22 Cl -0.065 7.065 23 H 0.275 0.725 24 H 0.130 0.870 25 H 0.159 0.841 26 H 0.409 0.591 27 H 0.146 0.854 28 H 0.171 0.829 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -4.795 -8.383 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.481 4.481 8 H 0.075 0.925 9 C 0.049 3.951 10 C -0.501 4.501 11 S 0.327 5.673 12 C -0.384 4.384 13 C 0.019 3.981 14 N -0.297 5.297 15 C 0.120 3.880 16 C -0.130 4.130 17 Cl -0.026 7.026 18 C -0.102 4.102 19 C -0.162 4.162 20 C -0.091 4.091 21 C -0.135 4.135 22 Cl -0.036 7.036 23 H 0.085 0.915 24 H 0.148 0.852 25 H 0.177 0.823 26 H 0.247 0.753 27 H 0.164 0.836 28 H 0.189 0.811 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.620 -5.360 -7.599 10.865 hybrid contribution 1.485 1.401 0.115 2.045 sum 7.105 -3.959 -7.484 11.053 Atomic orbital electron populations 1.69945 1.08090 1.28655 1.39448 1.26334 0.95412 1.03172 0.92957 0.85532 0.79123 0.78029 0.79096 1.19187 1.19724 1.18919 1.18898 0.93869 0.90540 1.44840 0.92454 1.17816 0.93024 0.91800 0.92502 1.24482 1.06558 0.97992 1.21103 1.81625 1.22197 1.02008 1.61451 1.24940 0.99139 1.02319 1.11981 1.17724 0.88288 0.93301 0.98775 1.41345 1.14404 1.58360 1.15589 1.17337 0.91464 0.93812 0.85398 1.20872 0.86390 1.09742 0.95947 1.98397 1.22663 1.91263 1.90231 1.21266 0.99647 0.95933 0.93336 1.21191 0.90171 1.02979 1.01823 1.21232 1.01487 0.95840 0.90521 1.20572 0.86796 1.10379 0.95753 1.98322 1.42434 1.95631 1.67243 0.91457 0.85193 0.82326 0.75296 0.83625 0.81139 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.01 10.80 21.80 0.24 -44.78 15 2 C 0.03 1.72 5.40 85.17 0.46 2.18 15 3 Si 0.96 40.81 29.57 68.60 2.03 42.84 15 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15 7 C -0.45 -23.94 8.72 23.34 0.20 -23.74 15 8 H 0.06 3.10 7.85 -2.91 -0.02 3.08 15 9 C 0.06 3.06 4.80 -20.98 -0.10 2.96 15 10 C -0.36 -18.95 9.64 67.63 0.65 -18.30 15 11 S 0.07 2.87 23.00 -56.49 -1.30 1.57 15 12 C -0.25 -10.05 9.31 66.66 0.62 -9.43 15 13 C 0.13 5.62 3.69 38.39 0.14 5.76 15 14 N -0.67 -25.85 5.16 -178.99 -0.92 -26.78 15 15 C 0.22 8.31 6.05 38.25 0.23 8.54 15 16 C -0.10 -3.68 6.26 22.45 0.14 -3.54 15 17 Cl -0.05 -2.24 23.36 -2.72 -0.06 -2.30 15 18 C -0.08 -2.49 9.82 22.28 0.22 -2.27 15 19 C -0.14 -3.43 10.04 22.30 0.22 -3.20 15 20 C -0.07 -1.83 9.82 22.28 0.22 -1.61 15 21 C -0.10 -3.28 6.34 22.45 0.14 -3.14 15 22 Cl -0.06 -1.87 27.83 -2.72 -0.08 -1.94 15 23 H 0.28 13.85 8.30 -92.70 -0.77 13.08 15 24 H 0.13 7.46 6.35 -2.91 -0.02 7.45 15 25 H 0.16 5.58 8.06 -2.91 -0.02 5.55 15 26 H 0.41 14.11 7.97 -92.71 -0.74 13.37 15 27 H 0.15 3.83 8.06 -2.91 -0.02 3.80 15 28 H 0.17 2.72 8.06 -2.91 -0.02 2.69 15 29 H 0.16 3.05 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -59.86 293.63 3.53 -56.33 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.48 Total: 20.82 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 3.15 Total: -45.76 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -0.69 Total: -71.55 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.30 Total: 1.57 kcal Atomic # 17 Polarization: -4.10 SS G_CDS: -0.14 Total: -4.24 kcal Total: -59.86 3.53 -56.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079669160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.891 kcal (2) G-P(sol) polarization free energy of solvation -59.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds