Wall clock time and date at job start Tue Mar 31 2020 04:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37101 * 120.00276 * 2 1 4 4 H 1.07995 * 120.00404 * 205.14885 * 3 2 1 5 5 C 1.38954 * 119.99718 * 25.14665 * 3 2 1 6 6 N 1.31418 * 119.99770 * 11.74739 * 5 3 2 7 7 Si 1.86796 * 120.00233 * 191.74220 * 5 3 2 8 8 H 1.48496 * 109.47006 * 90.00119 * 7 5 3 9 9 H 1.48499 * 109.47516 * 210.00206 * 7 5 3 10 10 H 1.48503 * 109.46916 * 330.00182 * 7 5 3 11 11 C 1.34773 * 120.00114 * 180.02562 * 2 1 3 12 12 O 1.21294 * 120.00246 * 179.97438 * 11 2 1 13 13 C 1.50705 * 119.99940 * 359.97438 * 11 2 1 14 14 H 1.09004 * 115.54449 * 34.42530 * 13 11 2 15 15 C 1.52990 * 117.50019 * 248.74825 * 13 11 2 16 16 C 1.52997 * 117.49700 * 180.08810 * 13 11 2 17 17 H 1.09005 * 117.49928 * 215.00510 * 16 13 11 18 18 C 1.50702 * 117.50153 * 0.02664 * 16 13 11 19 19 C 1.38235 * 119.99252 * 59.72576 * 18 16 13 20 20 C 1.38203 * 120.02624 * 179.72463 * 19 18 16 21 21 C 1.38378 * 120.01114 * 0.55169 * 20 19 18 22 22 Cl 1.73594 * 120.00865 * 179.74615 * 21 20 19 23 23 C 1.38317 * 119.98870 * 359.72294 * 21 20 19 24 24 C 1.38340 * 119.99116 * 240.00090 * 18 16 13 25 25 Cl 1.73600 * 120.00852 * 0.02562 * 24 18 16 26 26 H 1.08998 * 109.47412 * 265.05606 * 1 2 3 27 27 H 1.09004 * 109.47127 * 25.06177 * 1 2 3 28 28 H 1.08995 * 109.47026 * 145.05298 * 1 2 3 29 29 H 0.97003 * 119.99694 * 180.02562 * 6 5 3 30 30 H 1.09005 * 117.50002 * 359.97438 * 15 13 11 31 31 H 1.09003 * 117.49893 * 144.97571 * 15 13 11 32 32 H 1.08002 * 119.99018 * 359.97438 * 19 18 16 33 33 H 1.07994 * 119.99492 * 180.27087 * 20 19 18 34 34 H 1.07994 * 120.01404 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1537 1.2317 -0.3974 5 6 1.5545 2.3336 0.5114 6 7 0.4387 2.2429 1.1997 7 14 2.3394 4.0036 0.2206 8 1 1.8079 4.5882 -1.0367 9 1 2.0225 4.9043 1.3579 10 1 3.8118 3.8459 0.1095 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.4476 -2.4736 -0.5562 15 6 1.4586 -3.3303 1.2640 16 6 2.2075 -3.7626 0.0010 17 1 1.8105 -4.6130 -0.5536 18 6 3.7088 -3.6312 0.0029 19 6 4.3431 -2.9694 1.0375 20 6 5.7203 -2.8534 1.0430 21 6 6.4641 -3.3899 0.0067 22 17 8.1934 -3.2385 0.0103 23 6 5.8295 -4.0473 -1.0317 24 6 4.4513 -4.1680 -1.0336 25 17 3.6538 -4.9923 -2.3367 26 1 -0.3634 -0.0886 1.0238 27 1 -0.3633 0.9309 -0.4353 28 1 -0.3633 -0.8423 -0.5886 29 1 0.0225 3.0432 1.5563 30 1 2.0522 -2.9511 2.0959 31 1 0.5688 -3.8959 1.5407 32 1 3.7627 -2.5462 1.8441 33 1 6.2157 -2.3401 1.8537 34 1 6.4097 -4.4665 -1.8404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089335281.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:21 Heat of formation + Delta-G solvation = 6.939786 kcal Electronic energy + Delta-G solvation = -21451.878184 eV Core-core repulsion = 18016.492478 eV Total energy + Delta-G solvation = -3435.385705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.038 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.36138 -39.82413 -37.88712 -37.52345 -36.92676 -36.24901 -33.58408 -31.78475 -31.35865 -28.38539 -26.76943 -25.06392 -24.41652 -23.64272 -21.65949 -20.13046 -18.90254 -18.62741 -17.89005 -16.92922 -16.56189 -16.17065 -15.94235 -15.78542 -15.15686 -14.99502 -14.90767 -14.79931 -13.95696 -13.56848 -13.35189 -13.26192 -13.11269 -13.08656 -12.90865 -12.64504 -12.43525 -12.33202 -12.24686 -12.07606 -11.85905 -11.76321 -11.37648 -11.29245 -10.94770 -10.35521 -9.69783 -9.51096 -9.09774 -8.30966 -5.95021 0.07822 0.28254 0.87740 1.34817 1.36164 1.40409 1.51325 1.94325 2.27141 2.55493 2.97543 3.07147 3.24343 3.62898 3.77616 3.97113 4.03009 4.03712 4.17942 4.32176 4.37720 4.57905 4.70355 4.80737 4.87759 4.89490 5.03266 5.10455 5.14960 5.26662 5.41353 5.47168 5.52643 5.70602 6.15386 6.53904 7.22424 7.54623 8.12892 8.71360 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.004800 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.543439 B = 5831.762087 C = 7105.221822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.461 5.461 3 C -0.334 4.334 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.897 5.897 7 Si 0.981 3.019 8 H -0.268 1.268 9 H -0.275 1.275 10 H -0.278 1.278 11 C 0.463 3.537 12 O -0.599 6.599 13 C -0.172 4.172 14 H 0.139 0.861 15 C -0.129 4.129 16 C -0.097 4.097 17 H 0.143 0.857 18 C -0.029 4.029 19 C -0.027 4.027 20 C -0.126 4.126 21 C -0.031 4.031 22 Cl -0.064 7.064 23 C -0.121 4.121 24 C -0.028 4.028 25 Cl -0.057 7.057 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.271 0.729 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -13.732 -1.394 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.180 5.180 3 C -0.462 4.462 4 H 0.087 0.913 5 C -0.203 4.203 6 N -0.535 5.535 7 Si 0.806 3.194 8 H -0.193 1.193 9 H -0.200 1.200 10 H -0.203 1.203 11 C 0.253 3.747 12 O -0.485 6.485 13 C -0.192 4.192 14 H 0.157 0.843 15 C -0.166 4.166 16 C -0.115 4.115 17 H 0.160 0.840 18 C -0.030 4.030 19 C -0.046 4.046 20 C -0.145 4.145 21 C -0.058 4.058 22 Cl -0.035 7.035 23 C -0.141 4.141 24 C -0.055 4.055 25 Cl -0.028 7.028 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.197 -13.614 -1.419 14.056 hybrid contribution 0.341 1.366 -0.205 1.423 sum 3.538 -12.247 -1.624 12.851 Atomic orbital electron populations 1.21390 0.79853 1.00378 1.00339 1.43768 1.06491 1.04571 1.63138 1.19507 1.00590 0.86289 1.39795 0.91344 1.25979 0.97081 1.02610 0.94597 1.70055 1.19673 1.30569 1.33249 0.85105 0.78277 0.77785 0.78242 1.19339 1.19971 1.20297 1.20080 0.87631 0.85067 0.81904 1.90527 1.14860 1.86911 1.56241 1.22304 1.01663 0.89208 1.06075 0.84345 1.23229 1.03086 1.00129 0.90177 1.21177 0.88848 0.97834 1.03625 0.83983 1.18969 0.94562 0.96347 0.93123 1.20695 0.93332 0.92906 0.97669 1.21093 0.93933 1.00553 0.98922 1.20650 0.84884 1.02911 0.97337 1.98340 1.09866 1.96864 1.98452 1.20817 0.92544 1.01525 0.99174 1.20475 0.92177 1.01483 0.91392 1.98327 1.80034 1.76877 1.47528 0.93960 0.92923 0.91733 0.91910 0.89237 0.83932 0.85886 0.84468 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.29 8.45 127.77 1.08 6.37 16 2 N -0.46 -22.97 3.01 -658.89 -1.98 -24.95 16 3 C -0.33 -18.56 9.23 84.04 0.78 -17.79 16 4 H 0.07 4.10 7.46 -2.91 -0.02 4.08 16 5 C 0.00 -0.05 5.06 84.93 0.43 0.37 16 6 N -0.90 -47.01 10.83 21.67 0.23 -46.77 16 7 Si 0.98 42.52 29.57 68.60 2.03 44.55 16 8 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 C 0.46 21.09 7.26 87.66 0.64 21.73 16 12 O -0.60 -30.25 11.41 -3.07 -0.04 -30.29 16 13 C -0.17 -5.62 5.29 -11.54 -0.06 -5.68 16 14 H 0.14 3.89 6.51 -2.39 -0.02 3.87 16 15 C -0.13 -3.37 9.58 30.61 0.29 -3.07 16 16 C -0.10 -2.74 5.55 -11.52 -0.06 -2.80 16 17 H 0.14 3.33 7.16 -2.38 -0.02 3.31 16 18 C -0.03 -0.95 4.38 -19.84 -0.09 -1.03 16 19 C -0.03 -0.95 6.16 22.26 0.14 -0.81 16 20 C -0.13 -4.14 9.83 22.29 0.22 -3.92 16 21 C -0.03 -0.95 6.32 22.32 0.14 -0.81 16 22 Cl -0.06 -1.71 28.96 -2.72 -0.08 -1.79 16 23 C -0.12 -3.59 9.62 22.32 0.21 -3.37 16 24 C -0.03 -0.87 6.31 22.32 0.14 -0.73 16 25 Cl -0.06 -1.48 27.42 -2.72 -0.07 -1.56 16 26 H 0.04 1.85 7.85 -2.39 -0.02 1.83 16 27 H 0.05 2.44 6.78 -2.38 -0.02 2.42 16 28 H 0.06 2.19 6.22 -2.39 -0.01 2.18 16 29 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 30 H 0.09 2.58 6.18 -2.38 -0.01 2.56 16 31 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.12 4.40 5.76 -2.91 -0.02 4.39 16 33 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -62.45 312.04 5.10 -57.36 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.15 Total: 15.01 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 3.86 Total: -11.55 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.75 Total: -71.72 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.04 Total: -30.29 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.15 Total: -3.34 kcal Total: -62.45 5.10 -57.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089335281.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.295 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds