Wall clock time and date at job start Tue Mar 31 2020 04:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37102 * 119.99712 * 2 1 4 4 H 1.07998 * 119.99807 * 204.46159 * 3 2 1 5 5 C 1.38949 * 120.00310 * 24.46284 * 3 2 1 6 6 N 1.31413 * 119.99659 * 12.52526 * 5 3 2 7 7 Si 1.86794 * 120.00158 * 192.52598 * 5 3 2 8 8 H 1.48500 * 109.47388 * 59.99753 * 7 5 3 9 9 H 1.48501 * 109.47199 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46989 * 299.99889 * 7 5 3 11 11 C 1.34776 * 120.00118 * 179.97438 * 2 1 3 12 12 O 1.21293 * 120.00036 * 180.02562 * 11 2 1 13 13 C 1.50699 * 119.99764 * 359.72670 * 11 2 1 14 14 H 1.09006 * 115.55043 * 325.58075 * 13 11 2 15 15 C 1.52993 * 117.49962 * 111.25656 * 13 11 2 16 16 C 1.52998 * 117.49761 * 179.91439 * 13 11 2 17 17 H 1.09007 * 117.50124 * 0.02562 * 16 13 11 18 18 C 1.50705 * 117.49977 * 145.01870 * 16 13 11 19 19 C 1.38239 * 119.99154 * 59.73023 * 18 16 13 20 20 C 1.38204 * 120.02300 * 179.72725 * 19 18 16 21 21 C 1.38379 * 120.01299 * 0.54276 * 20 19 18 22 22 Cl 1.73601 * 120.00528 * 179.70520 * 21 20 19 23 23 C 1.38309 * 119.98930 * 359.72856 * 21 20 19 24 24 C 1.38336 * 119.99094 * 239.99998 * 18 16 13 25 25 Cl 1.73605 * 120.01263 * 0.02562 * 24 18 16 26 26 H 1.08997 * 109.47179 * 265.78061 * 1 2 3 27 27 H 1.09001 * 109.46945 * 25.78414 * 1 2 3 28 28 H 1.09001 * 109.46789 * 145.78029 * 1 2 3 29 29 H 0.97000 * 119.99484 * 179.97438 * 6 5 3 30 30 H 1.09004 * 117.49715 * 214.97983 * 15 13 11 31 31 H 1.08997 * 117.49813 * 359.97438 * 15 13 11 32 32 H 1.07991 * 119.98595 * 359.97225 * 19 18 16 33 33 H 1.08001 * 119.99239 * 180.26661 * 20 19 18 34 34 H 1.07994 * 120.01806 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1578 1.2294 -0.3873 5 6 1.5493 2.3367 0.4983 6 7 0.4346 2.2486 1.1886 7 14 2.3256 4.0069 0.1869 8 1 2.4071 4.2500 -1.2758 9 1 1.4962 5.0639 0.8194 10 1 3.6911 4.0346 0.7701 11 6 2.1390 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3854 -2.4722 0.0073 14 1 0.4501 -2.4722 0.5671 15 6 1.4531 -3.3336 -1.2553 16 6 2.2075 -3.7626 0.0056 17 1 3.2934 -3.6676 -0.0001 18 6 1.6619 -4.9364 0.7774 19 6 0.4278 -5.4658 0.4491 20 6 -0.0708 -6.5457 1.1528 21 6 0.6602 -7.0907 2.1937 22 17 0.0304 -8.4424 3.0824 23 6 1.8925 -6.5579 2.5263 24 6 2.3936 -5.4803 1.8178 25 17 3.9400 -4.8105 2.2349 26 1 -0.3633 -0.0756 1.0248 27 1 -0.3633 0.9254 -0.4470 28 1 -0.3633 -0.8498 -0.5779 29 1 0.0151 3.0509 1.5368 30 1 0.5623 -3.9005 -1.5261 31 1 2.0422 -2.9562 -2.0910 32 1 -0.1452 -5.0377 -0.3601 33 1 -1.0331 -6.9616 0.8931 34 1 2.4636 -6.9831 3.3383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089335284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:24 Heat of formation + Delta-G solvation = -7.353243 kcal Electronic energy + Delta-G solvation = -20688.466925 eV Core-core repulsion = 17252.461427 eV Total energy + Delta-G solvation = -3436.005498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.038 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22392 -40.16730 -37.96462 -37.59481 -37.03786 -36.37038 -33.60958 -31.94338 -31.50453 -28.39079 -26.86554 -25.13253 -24.50518 -23.63162 -21.65196 -20.24885 -18.95906 -18.68707 -17.93926 -17.09881 -16.65716 -16.34078 -16.01857 -15.79849 -15.40102 -15.04095 -15.01678 -14.74574 -13.95237 -13.50760 -13.38453 -13.37292 -13.14396 -13.07234 -12.99415 -12.65478 -12.52300 -12.39894 -12.25065 -12.14726 -11.96007 -11.78191 -11.46013 -11.41082 -10.99438 -10.36870 -9.97978 -9.65888 -9.50448 -8.34571 -5.99537 -0.12194 0.05499 0.83822 1.29026 1.37682 1.39933 1.50569 1.87883 2.26505 2.34171 2.92452 2.99144 3.17392 3.55321 3.65220 3.83355 3.93274 4.00104 4.12171 4.24910 4.33661 4.39792 4.57333 4.69714 4.82373 4.93756 4.99671 5.03989 5.08984 5.14168 5.37960 5.38690 5.43898 5.54433 6.10583 6.49590 7.16953 7.48160 8.05415 8.68419 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.022781 B = 0.003201 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.789121 B = 8745.902452 C = 9137.454329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.459 5.459 3 C -0.347 4.347 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.896 5.896 7 Si 0.988 3.012 8 H -0.265 1.265 9 H -0.269 1.269 10 H -0.279 1.279 11 C 0.463 3.537 12 O -0.633 6.633 13 C -0.162 4.162 14 H 0.133 0.867 15 C -0.118 4.118 16 C -0.101 4.101 17 H 0.102 0.898 18 C -0.041 4.041 19 C -0.090 4.090 20 C -0.092 4.092 21 C -0.035 4.035 22 Cl -0.055 7.055 23 C -0.104 4.104 24 C -0.037 4.037 25 Cl -0.070 7.070 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.274 0.726 30 H 0.149 0.851 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 -19.358 -0.686 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.177 5.177 3 C -0.475 4.475 4 H 0.087 0.913 5 C -0.203 4.203 6 N -0.534 5.534 7 Si 0.811 3.189 8 H -0.190 1.190 9 H -0.193 1.193 10 H -0.205 1.205 11 C 0.253 3.747 12 O -0.521 6.521 13 C -0.183 4.183 14 H 0.150 0.850 15 C -0.155 4.155 16 C -0.120 4.120 17 H 0.120 0.880 18 C -0.042 4.042 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.062 4.062 22 Cl -0.026 7.026 23 C -0.124 4.124 24 C -0.064 4.064 25 Cl -0.041 7.041 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.112 0.888 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.091 -19.242 -0.461 20.188 hybrid contribution 0.898 1.171 0.499 1.558 sum -5.193 -18.071 0.038 18.802 Atomic orbital electron populations 1.21417 0.79263 1.00909 1.00376 1.43741 1.06827 1.04386 1.62767 1.19571 1.00451 0.86257 1.41204 0.91311 1.26076 0.97053 1.02901 0.94307 1.70058 1.19640 1.30842 1.32855 0.85087 0.77931 0.76896 0.78970 1.18994 1.19321 1.20468 1.20117 0.87282 0.85487 0.81806 1.90472 1.16154 1.87935 1.57560 1.22189 1.01333 0.88538 1.06284 0.84953 1.23279 1.03097 0.99398 0.89770 1.20939 0.98760 0.91270 1.01017 0.88028 1.19178 0.95111 0.95481 0.94460 1.21309 0.93543 0.95395 1.00533 1.21454 1.01004 0.95374 0.93235 1.20854 0.94932 0.93335 0.97085 1.98384 1.86321 1.43217 1.74639 1.20962 0.95556 0.95175 1.00657 1.20789 0.89453 0.97630 0.98496 1.98405 1.27964 1.84990 1.92705 0.94244 0.92451 0.91022 0.91672 0.83293 0.88784 0.81056 0.81202 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.39 8.17 127.77 1.04 6.43 16 2 N -0.46 -24.08 3.01 -658.88 -1.98 -26.07 16 3 C -0.35 -20.12 9.24 84.04 0.78 -19.34 16 4 H 0.07 4.26 7.45 -2.91 -0.02 4.24 16 5 C 0.00 -0.08 5.05 84.93 0.43 0.35 16 6 N -0.90 -47.96 10.83 21.66 0.23 -47.73 16 7 Si 0.99 42.97 29.57 68.60 2.03 45.00 16 8 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 9 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 C 0.46 23.08 7.41 87.66 0.65 23.73 16 12 O -0.63 -36.87 15.97 -3.07 -0.05 -36.92 16 13 C -0.16 -5.70 4.44 -11.54 -0.05 -5.75 16 14 H 0.13 4.13 7.36 -2.38 -0.02 4.11 16 15 C -0.12 -3.07 9.56 30.61 0.29 -2.78 16 16 C -0.10 -3.14 5.07 -11.52 -0.06 -3.20 16 17 H 0.10 3.83 6.69 -2.38 -0.02 3.82 16 18 C -0.04 -1.04 5.61 -19.84 -0.11 -1.15 16 19 C -0.09 -1.59 9.29 22.26 0.21 -1.38 16 20 C -0.09 -1.42 9.83 22.30 0.22 -1.20 16 21 C -0.04 -0.64 6.32 22.32 0.14 -0.50 16 22 Cl -0.05 -0.89 28.96 -2.72 -0.08 -0.97 16 23 C -0.10 -2.24 9.62 22.32 0.21 -2.03 16 24 C -0.04 -0.96 6.31 22.32 0.14 -0.82 16 25 Cl -0.07 -2.12 27.42 -2.72 -0.07 -2.19 16 26 H 0.04 1.78 7.83 -2.39 -0.02 1.76 16 27 H 0.06 2.66 6.80 -2.39 -0.02 2.65 16 28 H 0.07 2.43 6.90 -2.39 -0.02 2.42 16 29 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.15 2.37 6.18 -2.39 -0.01 2.35 16 31 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.17 2.01 6.03 -2.92 -0.02 2.00 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -70.60 320.79 5.11 -65.49 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.15 Total: 11.03 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 3.89 Total: -7.64 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.75 Total: -73.80 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.05 Total: -36.92 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.15 Total: -3.16 kcal Total: -70.60 5.11 -65.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089335284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.137 kcal (2) G-P(sol) polarization free energy of solvation -70.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds