Wall clock time and date at job start Tue Mar 31 2020 04:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37098 * 119.99959 * 2 1 4 4 H 1.07998 * 120.00057 * 205.14461 * 3 2 1 5 5 C 1.38948 * 119.99891 * 25.15050 * 3 2 1 6 6 N 1.31410 * 120.00127 * 11.74466 * 5 3 2 7 7 Si 1.86803 * 119.99843 * 191.74457 * 5 3 2 8 8 H 1.48503 * 109.46897 * 60.00060 * 7 5 3 9 9 H 1.48502 * 109.47211 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47286 * 300.00019 * 7 5 3 11 11 C 1.34776 * 119.99815 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99692 * 180.02562 * 11 2 1 13 13 C 1.50696 * 120.00390 * 0.02562 * 11 2 1 14 14 H 1.09000 * 115.54809 * 34.32905 * 13 11 2 15 15 C 1.52997 * 117.52057 * 248.62923 * 13 11 2 16 16 C 1.53003 * 117.50207 * 179.97438 * 13 11 2 17 17 H 1.09001 * 117.49371 * 0.02562 * 16 13 11 18 18 C 1.50700 * 117.50053 * 215.00431 * 16 13 11 19 19 C 1.38247 * 119.99330 * 300.00251 * 18 16 13 20 20 C 1.38198 * 120.02675 * 179.97438 * 19 18 16 21 21 C 1.38381 * 120.01015 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 120.00185 * 179.97438 * 21 20 19 23 23 C 1.38305 * 119.99161 * 0.02562 * 21 20 19 24 24 C 1.38332 * 119.99290 * 119.72374 * 18 16 13 25 25 Cl 1.73599 * 120.00941 * 0.02562 * 24 18 16 26 26 H 1.09004 * 109.47245 * 265.05511 * 1 2 3 27 27 H 1.08995 * 109.47392 * 25.05671 * 1 2 3 28 28 H 1.08999 * 109.46975 * 145.05731 * 1 2 3 29 29 H 0.97002 * 120.00062 * 180.02562 * 6 5 3 30 30 H 1.09000 * 117.49837 * 145.02877 * 15 13 11 31 31 H 1.08998 * 117.49855 * 0.02562 * 15 13 11 32 32 H 1.08006 * 119.98405 * 359.97438 * 19 18 16 33 33 H 1.08004 * 119.99231 * 179.97438 * 20 19 18 34 34 H 1.07993 * 120.01478 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1537 1.2316 -0.3974 5 6 1.5545 2.3336 0.5114 6 7 0.4388 2.2429 1.1997 7 14 2.3394 4.0036 0.2205 8 1 2.4233 4.2635 -1.2392 9 1 1.5141 5.0573 0.8638 10 1 3.7044 4.0176 0.8051 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.4473 -2.4735 -0.5544 15 6 1.4597 -3.3315 1.2643 16 6 2.2075 -3.7627 0.0005 17 1 3.2934 -3.6676 0.0010 18 6 1.6580 -4.9379 -0.7663 19 6 0.4280 -5.4702 -0.4272 20 6 -0.0769 -6.5476 -1.1302 21 6 0.6484 -7.0938 -2.1745 22 17 0.0143 -8.4476 -3.0571 23 6 1.8790 -6.5617 -2.5142 24 6 2.3818 -5.4802 -1.8130 25 17 3.9233 -4.8075 -2.2430 26 1 -0.3634 -0.0886 1.0239 27 1 -0.3634 0.9309 -0.4352 28 1 -0.3633 -0.8424 -0.5886 29 1 0.0225 3.0431 1.5564 30 1 0.5704 -3.8979 1.5407 31 1 2.0533 -2.9526 2.0963 32 1 -0.1386 -5.0439 0.3875 33 1 -1.0377 -6.9632 -0.8646 34 1 2.4452 -6.9875 -3.3294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089335287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:27 Heat of formation + Delta-G solvation = -6.266642 kcal Electronic energy + Delta-G solvation = -20672.446603 eV Core-core repulsion = 17236.488224 eV Total energy + Delta-G solvation = -3435.958379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.038 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22422 -40.16746 -37.96354 -37.59109 -37.03649 -36.36966 -33.61458 -31.94102 -31.50084 -28.40689 -26.86138 -25.12826 -24.53093 -23.63439 -21.64311 -20.25108 -18.93801 -18.72221 -17.97581 -17.08401 -16.57533 -16.35245 -16.01887 -15.90306 -15.35292 -15.03792 -15.01705 -14.75906 -13.80362 -13.73476 -13.39938 -13.28309 -13.15699 -13.07902 -13.01038 -12.66933 -12.54096 -12.32651 -12.25575 -12.14560 -11.95284 -11.77525 -11.46421 -11.39609 -10.99132 -10.36913 -9.97791 -9.65820 -9.49905 -8.34631 -6.00125 -0.12018 0.05742 0.84162 1.29444 1.37577 1.39966 1.50282 1.89029 2.24292 2.35246 2.93141 2.99015 3.17066 3.55422 3.65683 3.83249 3.93296 4.00911 4.12762 4.23163 4.25862 4.36824 4.58146 4.71823 4.82319 4.92759 4.97240 5.07047 5.10648 5.14567 5.38522 5.38806 5.43519 5.54401 6.10841 6.49489 7.16777 7.47481 8.05244 8.68202 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.024550 B = 0.003153 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.239875 B = 8877.508871 C = 9439.920063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.458 5.458 3 C -0.348 4.348 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.893 5.893 7 Si 0.987 3.013 8 H -0.268 1.268 9 H -0.267 1.267 10 H -0.278 1.278 11 C 0.463 3.537 12 O -0.633 6.633 13 C -0.161 4.161 14 H 0.138 0.862 15 C -0.122 4.122 16 C -0.099 4.099 17 H 0.102 0.898 18 C -0.040 4.040 19 C -0.091 4.091 20 C -0.092 4.092 21 C -0.035 4.035 22 Cl -0.055 7.055 23 C -0.103 4.103 24 C -0.036 4.036 25 Cl -0.069 7.069 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.274 0.726 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 -19.312 -4.294 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.176 5.176 3 C -0.476 4.476 4 H 0.085 0.915 5 C -0.201 4.201 6 N -0.532 5.532 7 Si 0.810 3.190 8 H -0.193 1.193 9 H -0.192 1.192 10 H -0.204 1.204 11 C 0.253 3.747 12 O -0.521 6.521 13 C -0.182 4.182 14 H 0.156 0.844 15 C -0.159 4.159 16 C -0.118 4.118 17 H 0.120 0.880 18 C -0.041 4.041 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.062 4.062 22 Cl -0.026 7.026 23 C -0.122 4.122 24 C -0.062 4.062 25 Cl -0.040 7.040 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.187 0.813 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.122 -19.193 -4.321 20.604 hybrid contribution 0.898 1.172 -0.300 1.506 sum -5.225 -18.022 -4.621 19.324 Atomic orbital electron populations 1.21442 0.79259 1.00634 1.00641 1.43737 1.06824 1.04376 1.62681 1.19552 1.00850 0.86441 1.40714 0.91489 1.26054 0.97045 1.02802 0.94237 1.70036 1.19484 1.30956 1.32688 0.85105 0.78030 0.77002 0.78855 1.19282 1.19163 1.20367 1.20121 0.87297 0.85482 0.81830 1.90474 1.16146 1.87922 1.57603 1.22222 1.01381 0.88532 1.06072 0.84409 1.23222 1.03141 0.99674 0.89891 1.20930 0.98732 0.91414 1.00746 0.88030 1.19154 0.95143 0.95455 0.94373 1.21299 0.93598 0.95476 1.00480 1.21442 1.01013 0.95366 0.93215 1.20850 0.94939 0.93285 0.97098 1.98386 1.86161 1.43055 1.74956 1.20961 0.95485 0.95059 1.00732 1.20765 0.89542 0.97553 0.98387 1.98404 1.28326 1.84866 1.92371 0.93564 0.92573 0.91577 0.91608 0.83432 0.89457 0.81282 0.81277 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.37 8.45 127.77 1.08 6.45 16 2 N -0.46 -24.04 3.01 -658.89 -1.98 -26.02 16 3 C -0.35 -20.17 9.23 84.04 0.78 -19.39 16 4 H 0.07 4.17 7.46 -2.91 -0.02 4.15 16 5 C 0.00 0.04 5.06 84.93 0.43 0.47 16 6 N -0.89 -47.29 10.83 21.66 0.23 -47.05 16 7 Si 0.99 42.87 29.57 68.60 2.03 44.90 16 8 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 9 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 C 0.46 23.10 7.41 87.66 0.65 23.75 16 12 O -0.63 -36.96 15.98 -3.08 -0.05 -37.01 16 13 C -0.16 -5.67 4.93 -11.54 -0.06 -5.73 16 14 H 0.14 4.12 6.51 -2.39 -0.02 4.10 16 15 C -0.12 -3.40 9.57 30.61 0.29 -3.11 16 16 C -0.10 -3.10 5.06 -11.52 -0.06 -3.16 16 17 H 0.10 3.84 6.69 -2.39 -0.02 3.83 16 18 C -0.04 -1.00 5.61 -19.84 -0.11 -1.11 16 19 C -0.09 -1.59 9.30 22.26 0.21 -1.38 16 20 C -0.09 -1.38 9.83 22.29 0.22 -1.16 16 21 C -0.03 -0.61 6.32 22.32 0.14 -0.47 16 22 Cl -0.05 -0.85 28.96 -2.72 -0.08 -0.93 16 23 C -0.10 -2.13 9.62 22.31 0.21 -1.91 16 24 C -0.04 -0.90 6.31 22.32 0.14 -0.76 16 25 Cl -0.07 -2.01 27.42 -2.72 -0.07 -2.09 16 26 H 0.05 2.04 7.85 -2.38 -0.02 2.02 16 27 H 0.06 2.62 6.78 -2.39 -0.02 2.60 16 28 H 0.07 2.28 6.22 -2.39 -0.01 2.27 16 29 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.15 2.64 6.18 -2.39 -0.01 2.63 16 31 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.17 2.07 6.02 -2.91 -0.02 2.05 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -69.75 320.06 5.15 -64.60 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.15 Total: 11.12 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 3.92 Total: -7.51 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.75 Total: -73.07 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.05 Total: -37.01 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -0.15 Total: -3.02 kcal Total: -69.75 5.15 -64.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089335287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.332 kcal (2) G-P(sol) polarization free energy of solvation -69.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds