Wall clock time and date at job start Tue Mar 31 2020 04:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37104 * 119.99637 * 2 1 4 4 H 1.07998 * 120.00137 * 152.27314 * 3 2 1 5 5 C 1.38948 * 119.99968 * 332.27694 * 3 2 1 6 6 N 1.31410 * 119.99788 * 330.80843 * 5 3 2 7 7 Si 1.86804 * 120.00145 * 150.81372 * 5 3 2 8 8 H 1.48500 * 109.46943 * 179.97438 * 7 5 3 9 9 H 1.48500 * 109.46848 * 59.99863 * 7 5 3 10 10 H 1.48493 * 109.46904 * 299.99658 * 7 5 3 11 11 C 1.34770 * 120.00274 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99959 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00010 * 0.02562 * 11 2 1 14 14 H 1.08999 * 115.54931 * 325.58275 * 13 11 2 15 15 C 1.53007 * 117.49978 * 111.25139 * 13 11 2 16 16 C 1.52999 * 117.49929 * 179.91023 * 13 11 2 17 17 H 1.09007 * 117.49939 * 144.99810 * 16 13 11 18 18 C 1.50702 * 117.49893 * 359.97438 * 16 13 11 19 19 C 1.38241 * 119.99641 * 300.00012 * 18 16 13 20 20 C 1.38198 * 120.02824 * 179.97438 * 19 18 16 21 21 C 1.38380 * 120.01375 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 120.00755 * 179.97438 * 21 20 19 23 23 C 1.38312 * 119.98517 * 0.02562 * 21 20 19 24 24 C 1.38345 * 119.99151 * 119.72423 * 18 16 13 25 25 Cl 1.73596 * 120.00420 * 0.02562 * 24 18 16 26 26 H 1.08996 * 109.46918 * 95.33163 * 1 2 3 27 27 H 1.09003 * 109.46893 * 215.33070 * 1 2 3 28 28 H 1.08999 * 109.47324 * 335.32741 * 1 2 3 29 29 H 0.96996 * 120.00786 * 353.70109 * 6 5 3 30 30 H 1.09003 * 117.49651 * 214.98261 * 15 13 11 31 31 H 1.08994 * 117.49623 * 359.97438 * 15 13 11 32 32 H 1.08000 * 119.98063 * 359.95897 * 19 18 16 33 33 H 1.07994 * 119.99083 * 179.97438 * 20 19 18 34 34 H 1.08003 * 120.01501 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1375 1.2412 0.4351 5 6 1.5753 2.3216 -0.5598 6 7 0.7160 2.2035 -1.5469 7 14 2.0237 4.0143 0.0907 8 1 1.2797 5.0501 -0.6701 9 1 3.4833 4.2357 -0.0700 10 1 1.6649 4.1028 1.5290 11 6 2.1390 -1.1671 0.0005 12 8 3.3519 -1.1670 0.0010 13 6 1.3855 -2.4722 0.0005 14 1 0.4477 -2.4736 0.5560 15 6 1.4588 -3.3303 -1.2642 16 6 2.2077 -3.7626 -0.0010 17 1 1.8107 -4.6130 0.5535 18 6 3.7089 -3.6311 -0.0030 19 6 4.3438 -2.9741 -1.0405 20 6 5.7204 -2.8527 -1.0427 21 6 6.4642 -3.3883 -0.0059 22 17 8.1935 -3.2363 -0.0092 23 6 5.8296 -4.0457 1.0324 24 6 4.4511 -4.1629 1.0364 25 17 3.6531 -4.9822 2.3424 26 1 -0.3633 -0.0955 -1.0232 27 1 -0.3633 -0.8384 0.5943 28 1 -0.3634 0.9338 0.4290 29 1 0.5517 1.3347 -1.9458 30 1 0.5693 -3.8965 -1.5404 31 1 2.0516 -2.9506 -2.0962 32 1 3.7637 -2.5558 -1.8497 33 1 6.2158 -2.3397 -1.8537 34 1 6.4096 -4.4636 1.8420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089335288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:30 Heat of formation + Delta-G solvation = 17.080921 kcal Electronic energy + Delta-G solvation = -21491.303367 eV Core-core repulsion = 18056.357414 eV Total energy + Delta-G solvation = -3434.945953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.038 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05672 -38.43913 -36.68331 -36.34304 -35.73823 -34.66679 -31.64427 -30.59031 -30.13314 -26.59646 -25.07046 -23.85643 -22.80859 -22.39771 -20.47793 -18.79435 -17.65936 -17.16018 -16.48721 -15.48805 -15.12994 -14.75708 -14.43005 -14.14862 -13.83449 -13.75375 -13.66228 -13.50471 -12.44769 -12.22155 -12.08047 -11.95500 -11.79862 -11.70074 -11.32094 -11.18681 -11.04953 -10.88511 -10.70840 -10.64728 -10.25595 -10.21615 -10.10831 -10.04080 -8.98127 -8.83401 -8.38838 -7.86111 -7.72544 -6.69135 -3.94227 1.28161 1.48498 2.03647 2.51229 3.20813 3.33432 3.42780 3.52850 3.88426 4.12415 4.28700 4.59863 4.75482 4.95110 4.99036 5.14707 5.18483 5.31705 5.41348 5.52910 5.60141 5.74961 5.80725 5.99739 6.03377 6.06104 6.19171 6.25647 6.34745 6.46977 6.56532 6.71163 6.90333 7.84861 8.06399 8.58071 8.87851 9.35887 9.84050 10.56357 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.004752 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.952562 B = 5891.060040 C = 7053.811721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.444 5.444 3 C -0.403 4.403 4 H 0.089 0.911 5 C 0.012 3.988 6 N -0.871 5.871 7 Si 1.070 2.930 8 H -0.280 1.280 9 H -0.283 1.283 10 H -0.284 1.284 11 C 0.467 3.533 12 O -0.564 6.564 13 C -0.157 4.157 14 H 0.116 0.884 15 C -0.151 4.151 16 C -0.102 4.102 17 H 0.119 0.881 18 C -0.014 4.014 19 C -0.014 4.014 20 C -0.113 4.113 21 C -0.024 4.024 22 Cl -0.078 7.078 23 C -0.119 4.119 24 C -0.019 4.019 25 Cl -0.074 7.074 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.275 0.725 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -12.964 1.769 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.163 5.163 3 C -0.530 4.530 4 H 0.107 0.893 5 C -0.196 4.196 6 N -0.505 5.505 7 Si 0.896 3.104 8 H -0.205 1.205 9 H -0.209 1.209 10 H -0.210 1.210 11 C 0.255 3.745 12 O -0.448 6.448 13 C -0.178 4.178 14 H 0.133 0.867 15 C -0.189 4.189 16 C -0.120 4.120 17 H 0.137 0.863 18 C -0.015 4.015 19 C -0.032 4.032 20 C -0.132 4.132 21 C -0.051 4.051 22 Cl -0.049 7.049 23 C -0.138 4.138 24 C -0.046 4.046 25 Cl -0.045 7.045 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.255 -11.351 1.737 11.936 hybrid contribution 0.164 -1.505 0.377 1.561 sum 3.419 -12.856 2.114 13.470 Atomic orbital electron populations 1.21689 0.82737 1.01363 1.00215 1.43585 1.04454 1.05233 1.62984 1.20321 1.04945 0.86024 1.41673 0.89302 1.26345 0.95956 1.03715 0.93628 1.70771 1.34399 1.28112 1.17173 0.83497 0.76528 0.74289 0.76124 1.20512 1.20885 1.21042 1.19200 0.87611 0.83618 0.84035 1.90549 1.13267 1.85857 1.55113 1.22437 1.00954 0.91598 1.02826 0.86664 1.23075 1.02286 1.01994 0.91512 1.21029 0.89847 0.98496 1.02674 0.86286 1.18728 0.93426 0.96361 0.93034 1.20655 0.92936 0.92323 0.97307 1.20917 0.93844 1.00198 0.98250 1.20548 0.84061 1.03005 0.97455 1.98342 1.11168 1.96911 1.98488 1.20556 0.92388 1.01956 0.98910 1.20313 0.91778 1.01517 0.90969 1.98328 1.80299 1.77572 1.48278 0.93713 0.93622 0.91155 0.91433 0.87852 0.88098 0.85000 0.85109 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.73 8.48 59.85 0.51 2.24 16 2 N -0.44 -10.78 2.84 -122.19 -0.35 -11.13 16 3 C -0.40 -10.98 8.98 -14.93 -0.13 -11.11 16 4 H 0.09 2.62 7.63 -52.49 -0.40 2.21 16 5 C 0.01 0.30 4.61 -17.47 -0.08 0.22 16 6 N -0.87 -23.53 12.80 55.50 0.71 -22.82 16 7 Si 1.07 23.45 30.01 -169.99 -5.10 18.35 16 8 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 C 0.47 10.57 7.27 -10.99 -0.08 10.49 16 12 O -0.56 -14.08 11.46 5.55 0.06 -14.01 16 13 C -0.16 -2.68 5.30 -91.77 -0.49 -3.17 16 14 H 0.12 1.76 6.52 -51.93 -0.34 1.42 16 15 C -0.15 -2.13 9.58 -26.69 -0.26 -2.39 16 16 C -0.10 -1.55 5.55 -91.73 -0.51 -2.06 16 17 H 0.12 1.59 7.17 -51.92 -0.37 1.22 16 18 C -0.01 -0.24 4.37 -104.58 -0.46 -0.70 16 19 C -0.01 -0.24 6.17 -39.59 -0.24 -0.48 16 20 C -0.11 -1.85 9.83 -39.54 -0.39 -2.24 16 21 C -0.02 -0.37 6.32 -39.50 -0.25 -0.62 16 22 Cl -0.08 -1.08 28.96 -51.86 -1.50 -2.58 16 23 C -0.12 -1.82 9.62 -39.51 -0.38 -2.20 16 24 C -0.02 -0.30 6.31 -39.50 -0.25 -0.55 16 25 Cl -0.07 -1.04 27.42 -51.86 -1.42 -2.46 16 26 H 0.04 0.90 7.06 -51.93 -0.37 0.54 16 27 H 0.05 0.77 6.24 -51.93 -0.32 0.45 16 28 H 0.07 1.53 7.36 -51.93 -0.38 1.15 16 29 H 0.27 7.41 6.65 -40.82 -0.27 7.14 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.49 6.18 -51.93 -0.32 1.17 16 32 H 0.13 2.30 5.78 -52.49 -0.30 2.00 16 33 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 34 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -29.56 312.02 -9.05 -38.60 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.14 Total: 3.93 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -3.01 Total: -12.58 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.36 Total: -33.95 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.06 Total: -14.01 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.10 Total: 18.35 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -2.92 Total: -5.04 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.56 -9.05 -38.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089335288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.683 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds