Wall clock time and date at job start Tue Mar 31 2020 04:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00261 * 2 1 4 4 C 1.50699 * 109.47274 * 69.10483 * 3 2 1 5 5 H 1.08002 * 119.99831 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99960 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00257 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99880 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46937 * 90.00006 * 8 6 4 10 10 H 1.48504 * 109.46778 * 209.99732 * 8 6 4 11 11 H 1.48498 * 109.47041 * 329.99677 * 8 6 4 12 12 C 1.46900 * 110.99690 * 236.04332 * 2 1 3 13 13 H 1.08997 * 109.47253 * 65.69917 * 12 2 1 14 14 C 1.53004 * 109.47176 * 185.69879 * 12 2 1 15 15 O 1.42902 * 109.47059 * 63.61110 * 14 12 2 16 16 C 1.50698 * 109.47277 * 305.69821 * 12 2 1 17 17 C 1.38262 * 119.99583 * 140.00391 * 16 12 2 18 18 C 1.38216 * 120.01932 * 180.02562 * 17 16 12 19 19 C 1.38238 * 120.01477 * 359.97438 * 18 17 16 20 20 C 1.38305 * 119.98679 * 359.97438 * 19 18 17 21 21 Br 1.89103 * 120.01172 * 180.02562 * 20 19 18 22 22 C 1.38197 * 119.99558 * 319.97630 * 16 12 2 23 23 H 1.09000 * 109.47206 * 183.95919 * 1 2 3 24 24 H 1.09001 * 109.46535 * 303.95111 * 1 2 3 25 25 H 1.08997 * 109.47247 * 63.95193 * 1 2 3 26 26 H 1.09003 * 109.47400 * 189.10728 * 3 2 1 27 27 H 1.09000 * 109.46834 * 309.10565 * 3 2 1 28 28 H 0.96996 * 120.00729 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47045 * 183.61014 * 14 12 2 30 30 H 1.09001 * 109.46864 * 303.61636 * 14 12 2 31 31 H 0.96695 * 113.99775 * 180.02562 * 15 14 12 32 32 H 1.07998 * 119.98937 * 359.72099 * 17 16 12 33 33 H 1.08003 * 119.99445 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.01374 * 180.02562 * 19 18 17 35 35 H 1.08003 * 120.00646 * 0.02562 * 22 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7025 2.0220 1.3274 5 1 1.1780 1.4716 2.0944 6 6 2.1040 3.3199 1.5625 7 7 2.7431 3.9899 0.6287 8 14 1.7402 4.1266 3.2076 9 1 2.8649 3.8720 4.1432 10 1 1.5773 5.5901 3.0159 11 1 0.4891 3.5589 3.7713 12 6 1.9954 -0.7661 -1.1376 13 1 1.7308 -0.2633 -2.0678 14 6 3.5183 -0.8635 -1.0259 15 8 3.8636 -1.5963 0.1513 16 6 1.4014 -2.1510 -1.1285 17 6 1.0219 -2.7481 -2.3164 18 6 0.4766 -4.0181 -2.3086 19 6 0.3108 -4.6922 -1.1131 20 6 0.6912 -4.0957 0.0753 21 35 0.4654 -5.0174 1.7110 22 6 1.2366 -2.8243 0.0671 23 1 -0.3633 -1.0252 0.0710 24 1 -0.3632 0.5740 0.8525 25 1 -0.3633 0.4513 -0.9232 26 1 3.0731 1.3469 -0.1627 27 1 1.5206 1.9428 -0.7975 28 1 3.0260 4.9028 0.7941 29 1 3.9147 -1.3762 -1.9023 30 1 3.9432 0.1386 -0.9678 31 1 4.8157 -1.6972 0.2866 32 1 1.1471 -2.2201 -3.2501 33 1 0.1799 -4.4841 -3.2367 34 1 -0.1149 -5.6847 -1.1071 35 1 1.5331 -2.3578 0.9950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095980926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:51 Heat of formation + Delta-G solvation = -10.975179 kcal Electronic energy + Delta-G solvation = -18552.456893 eV Core-core repulsion = 15596.990580 eV Total energy + Delta-G solvation = -2955.466312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 313.042 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62093 -37.20392 -35.34550 -32.85860 -32.15537 -31.08045 -29.26940 -28.27225 -27.19429 -24.24324 -23.34238 -22.32639 -21.16849 -19.35953 -17.18527 -16.58957 -16.24863 -15.44422 -15.08370 -14.73226 -14.44895 -14.01107 -13.60147 -13.24028 -12.98332 -12.94408 -12.55490 -12.13389 -11.88710 -11.67605 -11.17093 -10.96750 -10.95068 -10.76485 -10.63461 -10.55425 -10.34826 -10.10842 -9.87306 -9.39194 -9.20872 -8.57940 -8.51364 -8.39522 -7.24746 -6.02714 -4.02627 1.25382 1.50203 1.79515 3.33327 3.39097 3.43364 3.78070 4.42141 4.65745 4.81076 4.89755 5.01202 5.20983 5.33186 5.38755 5.57450 5.64841 5.81451 5.84675 5.88002 6.06895 6.18545 6.20387 6.32979 6.42413 6.48811 6.72545 6.79769 7.02029 7.24584 7.29080 7.81013 8.05509 8.13260 8.18193 8.53918 9.04757 9.61161 11.08265 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.004421 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.966278 B = 6331.225467 C = 7169.326941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.521 5.521 3 C 0.190 3.810 4 C -0.500 4.500 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.902 5.902 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.120 3.880 13 H 0.051 0.949 14 C 0.088 3.912 15 O -0.550 6.550 16 C -0.057 4.057 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.101 4.101 20 C -0.099 4.099 21 Br -0.063 7.063 22 C -0.035 4.035 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.009 0.991 26 H 0.035 0.965 27 H -0.010 1.010 28 H 0.260 0.740 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.368 0.632 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 -18.049 -4.945 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.246 5.246 3 C 0.065 3.935 4 C -0.539 4.539 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.542 5.542 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C 0.010 3.990 13 H 0.069 0.931 14 C 0.010 3.990 15 O -0.353 6.353 16 C -0.059 4.059 17 C -0.128 4.128 18 C -0.143 4.143 19 C -0.121 4.121 20 C -0.178 4.178 21 Br 0.022 6.978 22 C -0.055 4.055 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.007 0.993 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.213 0.787 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.956 -18.455 -3.865 19.085 hybrid contribution 0.247 1.235 -0.457 1.340 sum -2.709 -17.219 -4.322 17.959 Atomic orbital electron populations 1.22287 0.88785 0.99896 1.00459 1.62155 1.06632 1.17576 1.38224 1.19831 0.95557 0.81172 0.96908 1.21129 1.36319 0.97027 0.99402 0.91831 1.24964 0.95404 0.97244 0.97008 1.69945 1.39789 1.11162 1.33271 0.86504 0.78786 0.78227 0.83939 1.20644 1.21410 1.19853 1.20631 0.93374 0.90502 0.94447 0.93093 1.22210 0.94094 0.95872 0.86814 1.86599 1.27379 1.76689 1.44618 1.19833 0.97463 0.96092 0.92470 1.21179 0.98400 0.95363 0.97855 1.20965 1.00875 0.95104 0.97372 1.20992 1.00043 0.99868 0.91232 1.21818 1.07528 0.97153 0.91302 1.96654 1.96671 1.75984 1.28491 1.21173 0.93278 0.90880 1.00136 0.93346 0.90599 0.97232 0.94697 0.99263 0.92998 0.94613 0.92025 0.78716 0.85968 0.85705 0.85744 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 8.92 60.07 0.54 1.22 16 2 N -0.52 -11.04 3.88 -237.73 -0.92 -11.97 16 3 C 0.19 4.81 4.59 -4.98 -0.02 4.79 16 4 C -0.50 -13.93 8.49 -34.44 -0.29 -14.22 16 5 H 0.06 1.78 7.34 -52.49 -0.39 1.40 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.12 2.11 2.11 -68.86 -0.14 1.96 16 13 H 0.05 0.88 8.00 -51.93 -0.42 0.46 16 14 C 0.09 1.44 6.49 37.16 0.24 1.68 16 15 O -0.55 -9.09 12.08 -35.23 -0.43 -9.51 16 16 C -0.06 -0.90 3.66 -104.63 -0.38 -1.28 16 17 C -0.11 -1.43 9.67 -39.58 -0.38 -1.81 16 18 C -0.12 -1.45 10.05 -39.59 -0.40 -1.84 16 19 C -0.10 -1.26 9.79 -39.56 -0.39 -1.65 16 20 C -0.10 -1.42 6.22 -39.52 -0.25 -1.67 16 21 Br -0.06 -0.84 33.70 -68.01 -2.29 -3.13 16 22 C -0.03 -0.57 6.69 -39.56 -0.26 -0.83 16 23 H 0.05 0.88 5.96 -51.93 -0.31 0.57 16 24 H 0.08 1.62 6.98 -51.93 -0.36 1.25 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.04 0.93 5.73 -51.93 -0.30 0.63 16 27 H -0.01 -0.28 8.09 -51.93 -0.42 -0.70 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 1.11 6.02 -51.93 -0.31 0.80 16 31 H 0.37 4.42 9.12 45.56 0.42 4.83 16 32 H 0.12 1.37 8.04 -52.49 -0.42 0.94 16 33 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.15 2.81 7.47 -52.48 -0.39 2.41 16 LS Contribution 309.38 15.07 4.66 4.66 Total: -1.00 -30.44 309.38 -8.83 -39.27 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.73 Total: 1.92 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.84 Total: -12.22 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.19 Total: -37.66 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.43 Total: -9.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -2.29 Total: -3.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.44 -8.83 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095980926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.292 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds