Wall clock time and date at job start Tue Mar 31 2020 04:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00261 * 2 1 4 4 C 1.50699 * 109.47274 * 69.10483 * 3 2 1 5 5 H 1.08002 * 119.99831 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99960 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00257 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99880 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46937 * 90.00006 * 8 6 4 10 10 H 1.48504 * 109.46778 * 209.99732 * 8 6 4 11 11 H 1.48498 * 109.47041 * 329.99677 * 8 6 4 12 12 C 1.46900 * 110.99690 * 236.04332 * 2 1 3 13 13 H 1.08997 * 109.47253 * 65.69917 * 12 2 1 14 14 C 1.53004 * 109.47176 * 185.69879 * 12 2 1 15 15 O 1.42902 * 109.47059 * 63.61110 * 14 12 2 16 16 C 1.50698 * 109.47277 * 305.69821 * 12 2 1 17 17 C 1.38262 * 119.99583 * 140.00391 * 16 12 2 18 18 C 1.38216 * 120.01932 * 180.02562 * 17 16 12 19 19 C 1.38238 * 120.01477 * 359.97438 * 18 17 16 20 20 C 1.38305 * 119.98679 * 359.97438 * 19 18 17 21 21 Br 1.89103 * 120.01172 * 180.02562 * 20 19 18 22 22 C 1.38197 * 119.99558 * 319.97630 * 16 12 2 23 23 H 1.09000 * 109.47206 * 183.95919 * 1 2 3 24 24 H 1.09001 * 109.46535 * 303.95111 * 1 2 3 25 25 H 1.08997 * 109.47247 * 63.95193 * 1 2 3 26 26 H 1.09003 * 109.47400 * 189.10728 * 3 2 1 27 27 H 1.09000 * 109.46834 * 309.10565 * 3 2 1 28 28 H 0.96996 * 120.00729 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47045 * 183.61014 * 14 12 2 30 30 H 1.09001 * 109.46864 * 303.61636 * 14 12 2 31 31 H 0.96695 * 113.99775 * 180.02562 * 15 14 12 32 32 H 1.07998 * 119.98937 * 359.72099 * 17 16 12 33 33 H 1.08003 * 119.99445 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.01374 * 180.02562 * 19 18 17 35 35 H 1.08003 * 120.00646 * 0.02562 * 22 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7025 2.0220 1.3274 5 1 1.1780 1.4716 2.0944 6 6 2.1040 3.3199 1.5625 7 7 2.7431 3.9899 0.6287 8 14 1.7402 4.1266 3.2076 9 1 2.8649 3.8720 4.1432 10 1 1.5773 5.5901 3.0159 11 1 0.4891 3.5589 3.7713 12 6 1.9954 -0.7661 -1.1376 13 1 1.7308 -0.2633 -2.0678 14 6 3.5183 -0.8635 -1.0259 15 8 3.8636 -1.5963 0.1513 16 6 1.4014 -2.1510 -1.1285 17 6 1.0219 -2.7481 -2.3164 18 6 0.4766 -4.0181 -2.3086 19 6 0.3108 -4.6922 -1.1131 20 6 0.6912 -4.0957 0.0753 21 35 0.4654 -5.0174 1.7110 22 6 1.2366 -2.8243 0.0671 23 1 -0.3633 -1.0252 0.0710 24 1 -0.3632 0.5740 0.8525 25 1 -0.3633 0.4513 -0.9232 26 1 3.0731 1.3469 -0.1627 27 1 1.5206 1.9428 -0.7975 28 1 3.0260 4.9028 0.7941 29 1 3.9147 -1.3762 -1.9023 30 1 3.9432 0.1386 -0.9678 31 1 4.8157 -1.6972 0.2866 32 1 1.1471 -2.2201 -3.2501 33 1 0.1799 -4.4841 -3.2367 34 1 -0.1149 -5.6847 -1.1071 35 1 1.5331 -2.3578 0.9950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095980926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:50 Heat of formation + Delta-G solvation = -31.464910 kcal Electronic energy + Delta-G solvation = -18553.345394 eV Core-core repulsion = 15596.990580 eV Total energy + Delta-G solvation = -2956.354814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 313.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81551 -38.55678 -36.81746 -34.78834 -33.37492 -32.37426 -30.41351 -29.53356 -29.13202 -26.03370 -24.72179 -23.50548 -22.62088 -20.78457 -18.72000 -18.22952 -17.52117 -16.92825 -16.67345 -16.10502 -15.86756 -15.48658 -15.06414 -14.46997 -14.32289 -14.14309 -14.00116 -13.92433 -13.36079 -13.23770 -12.85137 -12.75431 -12.43916 -12.28726 -12.12987 -11.98293 -11.76112 -11.50236 -11.28798 -11.14439 -10.76133 -10.51989 -9.66738 -9.56887 -8.97115 -8.18958 -6.26933 0.20390 0.44613 0.73933 1.40733 1.41751 1.52708 2.40720 2.71591 3.13284 3.23527 3.49933 3.71636 4.03729 4.22682 4.25915 4.37045 4.41360 4.49121 4.57482 4.67414 4.70473 4.74734 4.88354 5.06074 5.10056 5.18941 5.29810 5.37849 5.43212 5.63520 5.71148 5.94960 6.09770 6.35016 6.64335 6.87858 7.04121 7.41719 8.91612 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.004421 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.966278 B = 6331.225467 C = 7169.326941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.529 5.529 3 C 0.207 3.793 4 C -0.518 4.518 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.115 3.885 13 H 0.055 0.945 14 C 0.092 3.908 15 O -0.567 6.567 16 C -0.072 4.072 17 C -0.107 4.107 18 C -0.111 4.111 19 C -0.096 4.096 20 C -0.109 4.109 21 Br -0.060 7.060 22 C -0.052 4.052 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.012 0.988 26 H 0.020 0.980 27 H -0.039 1.039 28 H 0.264 0.736 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.385 0.615 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -19.793 -5.767 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.253 5.253 3 C 0.081 3.919 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.193 4.193 7 N -0.574 5.574 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.007 3.993 13 H 0.072 0.928 14 C 0.014 3.986 15 O -0.373 6.373 16 C -0.073 4.073 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.188 4.188 21 Br 0.025 6.975 22 C -0.072 4.072 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.030 0.970 26 H 0.037 0.963 27 H -0.021 1.021 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.233 0.767 32 H 0.162 0.838 33 H 0.181 0.819 34 H 0.168 0.832 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.636 -20.221 -4.687 21.073 hybrid contribution 0.467 1.676 -0.252 1.758 sum -3.169 -18.545 -4.938 19.451 Atomic orbital electron populations 1.22185 0.88151 1.00661 0.99567 1.62023 1.07294 1.15196 1.40792 1.19465 0.94426 0.83132 0.94896 1.21417 1.36324 0.97606 1.00245 0.92610 1.25793 0.95085 0.97797 1.00592 1.70054 1.40582 1.11555 1.35184 0.85474 0.78806 0.77338 0.79551 1.19998 1.20652 1.19265 1.20738 0.94280 0.91356 0.92970 0.92758 1.22151 0.93439 0.94956 0.88050 1.86563 1.29265 1.76483 1.44960 1.19653 0.99076 0.95036 0.93521 1.21436 0.97517 0.96068 0.97532 1.21387 0.98880 0.94141 0.98569 1.21357 0.98856 1.00801 0.90601 1.21927 1.07807 0.96699 0.92406 1.96647 1.96625 1.75529 1.28722 1.20867 0.95225 0.92028 0.99081 0.91433 0.92728 0.96985 0.96252 1.02107 0.92747 0.91242 0.94616 0.76697 0.83826 0.81863 0.83247 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.73 8.92 127.69 1.14 2.87 16 2 N -0.53 -23.05 3.88 -906.04 -3.52 -26.57 16 3 C 0.21 10.91 4.59 85.56 0.39 11.30 16 4 C -0.52 -29.70 8.49 25.60 0.22 -29.48 16 5 H 0.06 3.22 7.34 -2.91 -0.02 3.20 16 6 C 0.01 0.30 5.46 84.66 0.46 0.76 16 7 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 8 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C 0.12 4.06 2.11 44.17 0.09 4.15 16 13 H 0.05 1.86 8.00 -2.39 -0.02 1.84 16 14 C 0.09 3.02 6.49 71.98 0.47 3.49 16 15 O -0.57 -18.89 12.08 -148.98 -1.80 -20.69 16 16 C -0.07 -2.16 3.66 -19.87 -0.07 -2.23 16 17 C -0.11 -2.46 9.67 22.27 0.22 -2.25 16 18 C -0.11 -2.10 10.05 22.26 0.22 -1.88 16 19 C -0.10 -2.06 9.79 22.29 0.22 -1.84 16 20 C -0.11 -2.96 6.22 22.31 0.14 -2.82 16 21 Br -0.06 -1.55 33.70 -20.37 -0.69 -2.23 16 22 C -0.05 -1.66 6.69 22.29 0.15 -1.51 16 23 H 0.07 2.46 5.96 -2.39 -0.01 2.44 16 24 H 0.05 2.40 6.98 -2.39 -0.02 2.38 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.02 1.08 5.73 -2.39 -0.01 1.07 16 27 H -0.04 -2.21 8.09 -2.39 -0.02 -2.23 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.34 6.02 -2.39 -0.01 1.33 16 31 H 0.39 9.25 9.12 -74.06 -0.68 8.58 16 32 H 0.14 2.67 8.04 -2.91 -0.02 2.64 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.12 4.49 7.47 -2.91 -0.02 4.47 16 Total: -1.00 -66.81 309.38 0.38 -66.43 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.43 Total: 11.03 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 3.64 Total: -19.44 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.23 Total: -82.08 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -1.80 Total: -20.69 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 35 Polarization: -1.55 SS G_CDS: -0.69 Total: -2.23 kcal Total: -66.81 0.38 -66.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095980926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.966 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds