Wall clock time and date at job start Tue Mar 31 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00135 * 2 1 4 4 C 1.50695 * 109.47184 * 66.04517 * 3 2 1 5 5 H 1.08005 * 119.99773 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00254 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99501 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00019 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47177 * 59.99923 * 8 6 4 10 10 H 1.48497 * 109.46668 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47247 * 299.99663 * 8 6 4 12 12 C 1.46905 * 111.00374 * 236.04565 * 2 1 3 13 13 H 1.08996 * 109.46912 * 63.32090 * 12 2 1 14 14 C 1.53005 * 109.46752 * 303.32578 * 12 2 1 15 15 O 1.42898 * 109.46856 * 296.17565 * 14 12 2 16 16 C 1.50700 * 109.47389 * 183.32636 * 12 2 1 17 17 C 1.38259 * 119.99650 * 39.91347 * 16 12 2 18 18 C 1.38221 * 120.01924 * 179.73054 * 17 16 12 19 19 C 1.38238 * 120.00644 * 0.54294 * 18 17 16 20 20 C 1.38295 * 119.99370 * 359.72830 * 19 18 17 21 21 Br 1.89104 * 120.01243 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99320 * 220.18754 * 16 12 2 23 23 H 1.09000 * 109.46788 * 190.63023 * 1 2 3 24 24 H 1.09004 * 109.47058 * 70.63082 * 1 2 3 25 25 H 1.08996 * 109.47036 * 310.62753 * 1 2 3 26 26 H 1.08997 * 109.47171 * 186.04522 * 3 2 1 27 27 H 1.09001 * 109.46938 * 306.04759 * 3 2 1 28 28 H 0.96998 * 119.99801 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47332 * 56.17632 * 14 12 2 30 30 H 1.08997 * 109.46711 * 176.18055 * 14 12 2 31 31 H 0.96702 * 113.99874 * 179.97438 * 15 14 12 32 32 H 1.08004 * 119.98882 * 359.97438 * 17 16 12 33 33 H 1.07999 * 119.99407 * 180.27104 * 18 17 16 34 34 H 1.08006 * 120.00206 * 179.70761 * 19 18 17 35 35 H 1.08004 * 120.00422 * 0.02562 * 22 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0739 1.5115 2.0484 6 6 2.0268 3.3495 1.5285 7 7 2.7120 4.0019 0.6149 8 14 1.5830 4.1868 3.1382 9 1 2.1757 3.4297 4.2698 10 1 2.1141 5.5736 3.1376 11 1 0.1059 4.2231 3.2866 12 6 1.9955 -0.7660 -1.1376 13 1 1.6950 -0.2861 -2.0689 14 6 1.4384 -2.1904 -1.0949 15 8 1.9057 -2.8494 0.0838 16 6 3.4998 -0.8124 -1.0589 17 6 4.1231 -0.9808 0.1637 18 6 5.5026 -1.0290 0.2357 19 6 6.2599 -0.8976 -0.9133 20 6 5.6370 -0.7234 -2.1357 21 35 6.6724 -0.5442 -3.7079 22 6 4.2561 -0.6808 -2.2080 23 1 -0.3633 -1.0100 0.1896 24 1 -0.3633 0.3408 -0.9695 25 1 -0.3633 0.6691 0.7799 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9274 -0.8309 28 1 2.9860 4.9182 0.7766 29 1 0.3491 -2.1543 -1.0833 30 1 1.7745 -2.7384 -1.9750 31 1 1.5907 -3.7589 0.1770 32 1 3.5318 -1.0788 1.0622 33 1 5.9890 -1.1650 1.1903 34 1 7.3379 -0.9305 -0.8563 35 1 3.7691 -0.5444 -3.1624 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095980927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:53 Heat of formation + Delta-G solvation = -11.882781 kcal Electronic energy + Delta-G solvation = -18659.917968 eV Core-core repulsion = 15704.412299 eV Total energy + Delta-G solvation = -2955.505669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 313.042 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43519 -37.22398 -35.48172 -32.71215 -31.94534 -31.26970 -28.94979 -28.41376 -26.68083 -25.14120 -22.59092 -22.05470 -21.38556 -19.24806 -17.29571 -16.46215 -16.24731 -15.48245 -15.03162 -14.56871 -14.48580 -13.89041 -13.58334 -13.09983 -13.01914 -12.80312 -12.51566 -12.00941 -11.88987 -11.68357 -11.19361 -10.91028 -10.83825 -10.65536 -10.58285 -10.53391 -10.29179 -10.08753 -9.78399 -9.67262 -9.19391 -8.51100 -8.42978 -8.13499 -7.25953 -5.99919 -4.01309 1.59136 1.67158 1.87764 3.34295 3.38728 3.41306 4.04766 4.42613 4.52161 4.86679 4.98414 5.20312 5.35220 5.40362 5.42969 5.67875 5.71297 5.79718 5.83803 5.93714 6.07785 6.24049 6.24629 6.28589 6.51105 6.71939 6.85611 7.05678 7.27667 7.33945 7.34508 7.79269 7.90779 8.10435 8.18988 8.54389 9.05745 9.62278 11.10716 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.004876 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.173630 B = 5741.271253 C = 6864.450810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.522 5.522 3 C 0.190 3.810 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.120 3.880 13 H 0.050 0.950 14 C 0.089 3.911 15 O -0.548 6.548 16 C -0.054 4.054 17 C -0.036 4.036 18 C -0.126 4.126 19 C -0.097 4.097 20 C -0.096 4.096 21 Br -0.072 7.072 22 C -0.093 4.093 23 H 0.048 0.952 24 H 0.008 0.992 25 H 0.079 0.921 26 H 0.037 0.963 27 H -0.013 1.013 28 H 0.261 0.739 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.366 0.634 32 H 0.144 0.856 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -13.593 -7.528 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.247 5.247 3 C 0.065 3.935 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 C 0.011 3.989 13 H 0.068 0.932 14 C 0.010 3.990 15 O -0.351 6.351 16 C -0.055 4.055 17 C -0.054 4.054 18 C -0.145 4.145 19 C -0.117 4.117 20 C -0.175 4.175 21 Br 0.013 6.987 22 C -0.113 4.113 23 H 0.067 0.933 24 H 0.027 0.973 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.211 0.789 32 H 0.162 0.838 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.214 -12.976 -7.637 15.933 hybrid contribution -0.955 0.574 0.203 1.132 sum 4.259 -12.402 -7.434 15.073 Atomic orbital electron populations 1.22278 0.88723 1.00359 1.00002 1.62160 1.06705 1.17612 1.38240 1.19801 0.95982 0.81195 0.96491 1.21084 1.34922 0.96847 1.01669 0.91928 1.24976 0.95326 0.97368 0.96845 1.69957 1.38164 1.11425 1.34023 0.86589 0.78627 0.78377 0.83973 1.20170 1.21422 1.20354 1.20613 0.90832 0.93106 0.94390 0.93199 1.22205 0.97158 0.92450 0.87154 1.86675 1.75321 1.29655 1.43476 1.19565 0.94671 0.98504 0.92749 1.21266 0.93592 0.92017 0.98551 1.21185 0.94350 1.01293 0.97662 1.20971 0.99746 0.99795 0.91163 1.21465 0.93983 1.10446 0.91592 1.96603 1.70849 1.97245 1.34023 1.20875 0.91665 1.00034 0.98757 0.93330 0.97322 0.90255 0.94515 0.99516 0.92919 0.93337 0.94231 0.78902 0.83832 0.85602 0.85855 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.82 60.06 0.53 1.18 16 2 N -0.52 -10.91 3.86 -237.73 -0.92 -11.83 16 3 C 0.19 4.89 4.40 -4.98 -0.02 4.87 16 4 C -0.51 -14.07 8.36 -34.44 -0.29 -14.36 16 5 H 0.06 1.72 7.19 -52.48 -0.38 1.34 16 6 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.12 2.11 2.09 -68.86 -0.14 1.97 16 13 H 0.05 0.88 8.00 -51.93 -0.42 0.47 16 14 C 0.09 1.23 6.32 37.16 0.23 1.46 16 15 O -0.55 -7.66 12.08 -35.23 -0.43 -8.08 16 16 C -0.05 -0.96 3.52 -104.63 -0.37 -1.33 16 17 C -0.04 -0.66 7.49 -39.58 -0.30 -0.95 16 18 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 19 C -0.10 -1.50 9.79 -39.56 -0.39 -1.89 16 20 C -0.10 -1.54 6.22 -39.52 -0.25 -1.78 16 21 Br -0.07 -1.00 33.70 -68.01 -2.29 -3.29 16 22 C -0.09 -1.56 9.41 -39.56 -0.37 -1.93 16 23 H 0.05 0.78 6.56 -51.93 -0.34 0.44 16 24 H 0.01 0.15 8.12 -51.93 -0.42 -0.27 16 25 H 0.08 1.63 6.64 -51.93 -0.34 1.28 16 26 H 0.04 1.02 6.22 -51.93 -0.32 0.70 16 27 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.05 0.62 6.29 -51.93 -0.33 0.29 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.37 3.26 9.12 45.56 0.42 3.68 16 32 H 0.14 2.85 7.47 -52.48 -0.39 2.46 16 33 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.12 1.87 8.04 -52.48 -0.42 1.45 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -30.94 310.03 -8.87 -39.82 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.77 Total: 1.81 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.85 Total: -13.70 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.18 Total: -37.86 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.43 Total: -8.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -2.29 Total: -3.29 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.94 -8.87 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095980927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.933 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds