Wall clock time and date at job start Tue Mar 31 2020 04:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46812 * 2 1 4 4 C 1.36877 * 119.99495 * 263.81089 * 3 2 1 5 5 H 1.08002 * 119.99576 * 131.14183 * 4 3 2 6 6 C 1.39034 * 120.00272 * 311.13802 * 4 3 2 7 7 N 1.31372 * 120.00354 * 165.10126 * 6 4 3 8 8 Si 1.86800 * 120.00032 * 345.10295 * 6 4 3 9 9 H 1.48504 * 109.47430 * 91.20137 * 8 6 4 10 10 H 1.48499 * 109.47250 * 211.20100 * 8 6 4 11 11 H 1.48500 * 109.47066 * 331.19905 * 8 6 4 12 12 C 1.34773 * 119.99872 * 83.81584 * 3 2 1 13 13 O 1.21593 * 120.00528 * 0.54359 * 12 3 2 14 14 C 1.47700 * 119.99755 * 180.54318 * 12 3 2 15 15 C 1.39687 * 120.11347 * 329.08502 * 14 12 3 16 16 C 1.37919 * 119.96321 * 179.97438 * 15 14 12 17 17 C 1.38400 * 120.20143 * 0.02562 * 16 15 14 18 18 Br 1.89102 * 119.88040 * 179.97438 * 17 16 15 19 19 C 1.38935 * 120.23627 * 359.97438 * 17 16 15 20 20 O 1.35923 * 119.98536 * 179.97438 * 19 17 16 21 21 C 1.38404 * 120.02808 * 359.70572 * 19 17 16 22 22 H 1.09000 * 109.47783 * 295.18821 * 1 2 3 23 23 H 1.09004 * 109.46767 * 55.19070 * 1 2 3 24 24 H 1.09003 * 109.47155 * 175.18634 * 1 2 3 25 25 H 1.08995 * 109.46660 * 119.99214 * 2 1 3 26 26 H 1.08999 * 109.47476 * 239.99631 * 2 1 3 27 27 H 0.96995 * 120.00584 * 179.97438 * 7 6 4 28 28 H 1.08000 * 120.02160 * 359.97438 * 15 14 12 29 29 H 1.08000 * 119.89476 * 179.97438 * 16 15 14 30 30 H 0.96706 * 113.99777 * 89.99867 * 20 19 17 31 31 H 1.08003 * 120.10043 * 180.29562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3669 1.9839 -1.1785 5 1 1.9905 2.9685 -1.4135 6 6 3.2055 1.3284 -2.0731 7 7 3.3093 1.7568 -3.3106 8 14 4.1846 -0.1614 -1.5153 9 1 3.3987 -1.3949 -1.7725 10 1 5.4634 -0.2234 -2.2676 11 1 4.4701 -0.0504 -0.0622 12 6 2.1243 2.0585 1.1604 13 8 1.8242 1.5199 2.2084 14 6 2.6052 3.4550 1.1591 15 6 3.5179 3.8811 0.1913 16 6 3.9645 5.1859 0.1926 17 6 3.5115 6.0758 1.1509 18 35 4.1303 7.8627 1.1447 19 6 2.6037 5.6610 2.1174 20 8 2.1625 6.5391 3.0564 21 6 2.1441 4.3555 2.1210 22 1 -0.3635 0.4373 0.9299 23 1 -0.3633 0.5867 -0.8438 24 1 -0.3633 -1.0241 -0.0862 25 1 1.8933 -0.5137 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.8947 1.2998 -3.9346 28 1 3.8737 3.1891 -0.5577 29 1 4.6705 5.5140 -0.5559 30 1 1.3661 7.0234 2.7987 31 1 1.4348 4.0331 2.8689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095997774.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:00 Heat of formation + Delta-G solvation = -38.086635 kcal Electronic energy + Delta-G solvation = -18381.316353 eV Core-core repulsion = 15288.841305 eV Total energy + Delta-G solvation = -3092.475048 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87632 -38.56041 -36.22836 -35.29832 -32.45988 -32.04427 -30.39839 -29.78853 -28.41302 -25.18644 -23.65941 -22.24969 -21.91478 -19.61074 -18.37265 -17.06557 -16.06017 -15.86496 -15.63042 -14.97661 -14.80854 -14.14874 -13.94658 -13.53616 -13.27305 -12.79039 -12.47649 -12.33232 -12.02172 -11.78545 -11.63295 -11.28917 -11.04154 -10.88775 -10.57702 -10.50313 -10.19890 -10.09536 -10.02033 -9.39128 -8.83423 -8.55333 -8.21768 -7.85539 -6.65411 -4.36916 1.12416 1.59483 1.81571 2.94423 3.10020 3.18841 3.40555 3.92285 3.99658 4.27118 4.44263 4.74028 5.13974 5.52747 5.60773 5.74154 5.75096 5.94779 5.96880 6.04826 6.15550 6.32495 6.42950 6.55300 6.67029 6.78431 6.90621 7.10185 7.25364 7.73005 7.88814 8.06066 8.72940 9.08997 9.45945 10.41827 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.021228 B = 0.004989 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.705805 B = 5610.458206 C = 6530.397321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.456 5.456 4 C -0.350 4.350 5 H 0.106 0.894 6 C 0.070 3.930 7 N -0.853 5.853 8 Si 0.872 3.128 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.258 1.258 12 C 0.521 3.479 13 O -0.586 6.586 14 C -0.070 4.070 15 C -0.063 4.063 16 C -0.098 4.098 17 C -0.106 4.106 18 Br -0.057 7.057 19 C 0.107 3.893 20 O -0.487 6.487 21 C -0.098 4.098 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.279 0.721 28 H 0.177 0.823 29 H 0.135 0.865 30 H 0.386 0.614 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 8.412 4.479 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.176 5.176 4 C -0.478 4.478 5 H 0.124 0.876 6 C -0.139 4.139 7 N -0.486 5.486 8 Si 0.698 3.302 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.182 1.182 12 C 0.311 3.689 13 O -0.471 6.471 14 C -0.073 4.073 15 C -0.082 4.082 16 C -0.118 4.118 17 C -0.187 4.187 18 Br 0.028 6.972 19 C 0.060 3.940 20 O -0.297 6.297 21 C -0.118 4.118 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.194 0.806 29 H 0.153 0.847 30 H 0.242 0.758 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.864 8.560 5.075 9.989 hybrid contribution -0.063 -0.900 -0.339 0.964 sum 0.802 7.659 4.736 9.041 Atomic orbital electron populations 1.22000 0.96310 1.00954 1.02247 1.21645 0.94649 0.85014 1.01309 1.43589 1.56398 1.11662 1.05908 1.19074 1.29590 1.05071 0.94026 0.87634 1.25480 0.95949 0.97768 0.94721 1.69682 1.35533 1.40563 1.02832 0.86933 0.80076 0.82775 0.80465 1.19577 1.20886 1.18197 1.18293 0.80561 0.86318 0.83711 1.90656 1.54544 1.70311 1.31630 1.19986 0.97769 0.94347 0.95242 1.22544 0.93515 0.95476 0.96657 1.21103 1.00130 0.93266 0.97292 1.22414 1.04239 0.91885 1.00115 1.96611 1.87947 1.13910 1.98764 1.17856 0.96884 0.89482 0.89744 1.84859 1.48189 1.55804 1.40831 1.21399 1.00278 0.91595 0.98559 0.92687 0.92037 0.92870 0.91641 0.91023 0.91061 0.80566 0.84677 0.75826 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.19 37.16 0.38 -2.47 16 2 C 0.10 2.01 4.59 -4.04 -0.02 1.99 16 3 N -0.46 -10.34 1.99 -115.94 -0.23 -10.57 16 4 C -0.35 -8.28 6.30 -15.00 -0.09 -8.38 16 5 H 0.11 2.66 7.13 -52.49 -0.37 2.28 16 6 C 0.07 1.68 4.89 -17.45 -0.09 1.59 16 7 N -0.85 -21.42 13.95 55.50 0.77 -20.64 16 8 Si 0.87 18.93 25.28 -169.99 -4.30 14.64 16 9 H -0.27 -5.68 6.71 56.52 0.38 -5.30 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 12 C 0.52 11.90 7.36 -12.40 -0.09 11.81 16 13 O -0.59 -14.38 16.42 5.28 0.09 -14.30 16 14 C -0.07 -1.42 5.54 -104.98 -0.58 -2.01 16 15 C -0.06 -1.22 7.98 -39.16 -0.31 -1.53 16 16 C -0.10 -1.66 9.76 -39.64 -0.39 -2.04 16 17 C -0.11 -1.72 6.24 -39.26 -0.25 -1.96 16 18 Br -0.06 -0.79 33.14 -68.01 -2.25 -3.05 16 19 C 0.11 1.74 6.68 -39.26 -0.26 1.48 16 20 O -0.49 -6.80 12.82 -19.50 -0.25 -7.05 16 21 C -0.10 -1.77 9.54 -39.01 -0.37 -2.15 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.36 7.61 -51.93 -0.39 0.96 16 26 H 0.07 1.49 4.53 -51.93 -0.24 1.26 16 27 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.18 3.72 5.14 -52.49 -0.27 3.45 16 29 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 30 H 0.39 3.63 9.06 45.56 0.41 4.05 16 31 H 0.14 2.43 7.94 -52.48 -0.42 2.02 16 LS Contribution 285.83 15.07 4.31 4.31 Total: -1.00 -27.08 285.83 -6.06 -33.14 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.13 Total: 7.19 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.07 Total: -3.67 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.54 Total: -31.22 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.16 Total: -21.35 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.30 Total: 14.64 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -2.25 Total: -3.05 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.08 -6.06 -33.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095997774.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.944 kcal (2) G-P(sol) polarization free energy of solvation -27.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds