Wall clock time and date at job start Tue Mar 31 2020 04:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46812 * 2 1 4 4 C 1.36877 * 119.99495 * 263.81089 * 3 2 1 5 5 H 1.08002 * 119.99576 * 131.14183 * 4 3 2 6 6 C 1.39034 * 120.00272 * 311.13802 * 4 3 2 7 7 N 1.31372 * 120.00354 * 165.10126 * 6 4 3 8 8 Si 1.86800 * 120.00032 * 345.10295 * 6 4 3 9 9 H 1.48504 * 109.47430 * 91.20137 * 8 6 4 10 10 H 1.48499 * 109.47250 * 211.20100 * 8 6 4 11 11 H 1.48500 * 109.47066 * 331.19905 * 8 6 4 12 12 C 1.34773 * 119.99872 * 83.81584 * 3 2 1 13 13 O 1.21593 * 120.00528 * 0.54359 * 12 3 2 14 14 C 1.47700 * 119.99755 * 180.54318 * 12 3 2 15 15 C 1.39687 * 120.11347 * 329.08502 * 14 12 3 16 16 C 1.37919 * 119.96321 * 179.97438 * 15 14 12 17 17 C 1.38400 * 120.20143 * 0.02562 * 16 15 14 18 18 Br 1.89102 * 119.88040 * 179.97438 * 17 16 15 19 19 C 1.38935 * 120.23627 * 359.97438 * 17 16 15 20 20 O 1.35923 * 119.98536 * 179.97438 * 19 17 16 21 21 C 1.38404 * 120.02808 * 359.70572 * 19 17 16 22 22 H 1.09000 * 109.47783 * 295.18821 * 1 2 3 23 23 H 1.09004 * 109.46767 * 55.19070 * 1 2 3 24 24 H 1.09003 * 109.47155 * 175.18634 * 1 2 3 25 25 H 1.08995 * 109.46660 * 119.99214 * 2 1 3 26 26 H 1.08999 * 109.47476 * 239.99631 * 2 1 3 27 27 H 0.96995 * 120.00584 * 179.97438 * 7 6 4 28 28 H 1.08000 * 120.02160 * 359.97438 * 15 14 12 29 29 H 1.08000 * 119.89476 * 179.97438 * 16 15 14 30 30 H 0.96706 * 113.99777 * 89.99867 * 20 19 17 31 31 H 1.08003 * 120.10043 * 180.29562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3669 1.9839 -1.1785 5 1 1.9905 2.9685 -1.4135 6 6 3.2055 1.3284 -2.0731 7 7 3.3093 1.7568 -3.3106 8 14 4.1846 -0.1614 -1.5153 9 1 3.3987 -1.3949 -1.7725 10 1 5.4634 -0.2234 -2.2676 11 1 4.4701 -0.0504 -0.0622 12 6 2.1243 2.0585 1.1604 13 8 1.8242 1.5199 2.2084 14 6 2.6052 3.4550 1.1591 15 6 3.5179 3.8811 0.1913 16 6 3.9645 5.1859 0.1926 17 6 3.5115 6.0758 1.1509 18 35 4.1303 7.8627 1.1447 19 6 2.6037 5.6610 2.1174 20 8 2.1625 6.5391 3.0564 21 6 2.1441 4.3555 2.1210 22 1 -0.3635 0.4373 0.9299 23 1 -0.3633 0.5867 -0.8438 24 1 -0.3633 -1.0241 -0.0862 25 1 1.8933 -0.5137 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.8947 1.2998 -3.9346 28 1 3.8737 3.1891 -0.5577 29 1 4.6705 5.5140 -0.5559 30 1 1.3661 7.0234 2.7987 31 1 1.4348 4.0331 2.8689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095997774.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:00 Heat of formation + Delta-G solvation = -55.181638 kcal Electronic energy + Delta-G solvation = -18382.057648 eV Core-core repulsion = 15288.841305 eV Total energy + Delta-G solvation = -3093.216343 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43133 -40.06021 -37.53740 -37.09964 -34.23777 -33.46875 -31.94717 -31.15637 -29.81446 -27.01351 -25.20408 -23.65096 -23.42907 -21.25257 -19.92133 -18.63860 -17.67107 -17.50374 -17.05584 -16.41175 -16.38690 -15.82319 -15.57365 -14.99348 -14.80476 -14.53753 -14.09347 -13.83615 -13.58642 -13.19947 -13.14643 -12.81148 -12.71792 -12.51381 -11.99342 -11.87411 -11.80923 -11.70679 -11.26494 -11.15295 -10.61435 -9.95558 -9.64955 -9.59022 -8.51428 -6.24222 -0.31241 0.22050 0.53583 1.20596 1.33427 1.43202 1.78869 2.16960 2.41527 2.62805 2.95723 3.14245 3.78853 3.91287 4.14554 4.21924 4.31922 4.39060 4.51063 4.57712 4.80165 4.83786 4.96814 5.04540 5.20523 5.25952 5.45389 5.48691 5.67343 6.05375 6.19073 6.69776 6.88740 7.27242 7.65870 8.59097 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.021228 B = 0.004989 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.705805 B = 5610.458206 C = 6530.397321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.087 3.913 3 N -0.463 5.463 4 C -0.339 4.339 5 H 0.085 0.915 6 C 0.045 3.955 7 N -0.884 5.884 8 Si 0.913 3.087 9 H -0.255 1.255 10 H -0.278 1.278 11 H -0.272 1.272 12 C 0.516 3.484 13 O -0.610 6.610 14 C -0.094 4.094 15 C -0.074 4.074 16 C -0.092 4.092 17 C -0.108 4.108 18 Br -0.026 7.026 19 C 0.123 3.877 20 O -0.486 6.486 21 C -0.101 4.101 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.283 0.717 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.410 0.590 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 9.265 4.995 10.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 N -0.183 5.183 4 C -0.467 4.467 5 H 0.102 0.898 6 C -0.162 4.162 7 N -0.520 5.520 8 Si 0.738 3.262 9 H -0.180 1.180 10 H -0.204 1.204 11 H -0.197 1.197 12 C 0.306 3.694 13 O -0.496 6.496 14 C -0.097 4.097 15 C -0.094 4.094 16 C -0.111 4.111 17 C -0.188 4.188 18 Br 0.059 6.941 19 C 0.076 3.924 20 O -0.299 6.299 21 C -0.122 4.122 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.173 0.827 29 H 0.171 0.829 30 H 0.269 0.731 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.941 9.423 5.578 10.991 hybrid contribution -0.104 -0.988 -0.413 1.076 sum 0.837 8.435 5.165 9.926 Atomic orbital electron populations 1.21918 0.94236 1.02902 1.01461 1.21804 0.96484 0.84020 1.01167 1.43716 1.56597 1.12387 1.05599 1.18814 1.29373 1.04402 0.94074 0.89750 1.25816 0.96324 0.99469 0.94566 1.69725 1.36666 1.41948 1.03636 0.86292 0.79482 0.81367 0.79101 1.18037 1.20427 1.19675 1.18721 0.79964 0.87348 0.83338 1.90618 1.55655 1.71151 1.32220 1.19906 0.99266 0.93632 0.96940 1.22263 0.94305 0.96386 0.96411 1.21219 0.99921 0.92259 0.97726 1.22571 1.03522 0.93336 0.99369 1.96646 1.87591 1.11152 1.98690 1.17761 0.96121 0.89124 0.89387 1.84805 1.49547 1.55394 1.40175 1.21424 1.00466 0.92204 0.98092 0.93431 0.92769 0.89545 0.91765 0.91035 0.90679 0.82702 0.82914 0.73055 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 10.19 71.98 0.73 -4.47 16 2 C 0.09 3.61 4.59 86.38 0.40 4.01 16 3 N -0.46 -21.29 1.99 -638.97 -1.27 -22.56 16 4 C -0.34 -16.33 6.30 84.10 0.53 -15.80 16 5 H 0.08 4.39 7.13 -2.91 -0.02 4.37 16 6 C 0.04 2.16 4.89 84.95 0.42 2.57 16 7 N -0.88 -44.77 13.95 21.68 0.30 -44.47 16 8 Si 0.91 38.80 25.28 68.60 1.73 40.53 16 9 H -0.26 -10.19 6.71 99.48 0.67 -9.52 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 C 0.52 23.90 7.36 86.74 0.64 24.54 16 13 O -0.61 -30.26 16.42 -4.01 -0.07 -30.33 16 14 C -0.09 -3.86 5.54 -20.10 -0.11 -3.98 16 15 C -0.07 -2.91 7.98 22.54 0.18 -2.73 16 16 C -0.09 -3.00 9.76 22.23 0.22 -2.78 16 17 C -0.11 -3.26 6.24 22.48 0.14 -3.12 16 18 Br -0.03 -0.65 33.14 -20.37 -0.68 -1.32 16 19 C 0.12 3.78 6.68 22.48 0.15 3.93 16 20 O -0.49 -12.17 12.82 -92.68 -1.19 -13.35 16 21 C -0.10 -3.61 9.54 22.64 0.22 -3.40 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 24 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.06 2.65 7.61 -2.39 -0.02 2.63 16 26 H 0.07 2.93 4.53 -2.39 -0.01 2.91 16 27 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 28 H 0.16 6.73 5.14 -2.91 -0.01 6.71 16 29 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 30 H 0.41 6.34 9.06 -74.05 -0.67 5.67 16 31 H 0.14 4.85 7.94 -2.91 -0.02 4.83 16 Total: -1.00 -57.12 285.83 2.82 -54.30 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.47 Total: 18.42 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 3.51 Total: -1.22 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.97 Total: -67.03 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.25 Total: -43.68 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.73 Total: 40.53 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -0.68 Total: -1.32 kcal Total: -57.12 2.82 -54.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095997774.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.882 kcal (2) G-P(sol) polarization free energy of solvation -57.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds