Wall clock time and date at job start Tue Mar 31 2020 04:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00168 * 2 1 4 4 C 1.50696 * 109.47183 * 269.99721 * 3 2 1 5 5 H 1.07999 * 119.99846 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99959 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00355 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99791 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46937 * 90.00549 * 8 6 4 10 10 H 1.48504 * 109.47186 * 210.00303 * 8 6 4 11 11 H 1.48498 * 109.47466 * 330.00536 * 8 6 4 12 12 C 1.34777 * 120.00275 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00186 * 180.02562 * 12 2 1 14 14 N 1.34773 * 119.99705 * 0.02562 * 12 2 1 15 15 C 1.40001 * 120.00186 * 184.46143 * 14 12 2 16 16 C 1.38844 * 120.07121 * 325.29971 * 15 14 12 17 17 C 1.38122 * 119.94435 * 179.97438 * 16 15 14 18 18 N 1.48019 * 119.95565 * 180.02562 * 17 16 15 19 19 O 1.21801 * 119.99722 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00188 * 179.97438 * 18 17 16 21 21 C 1.38287 * 120.09099 * 359.97438 * 17 16 15 22 22 C 1.38257 * 120.15011 * 0.02562 * 21 17 16 23 23 C 1.38229 * 120.05486 * 359.97438 * 22 21 17 24 24 Cl 1.73604 * 120.04807 * 180.28189 * 23 22 21 25 25 H 1.08994 * 109.47619 * 270.00073 * 1 2 3 26 26 H 1.09003 * 109.46890 * 30.00218 * 1 2 3 27 27 H 1.09005 * 109.47003 * 149.99698 * 1 2 3 28 28 H 1.09008 * 109.47035 * 29.99456 * 3 2 1 29 29 H 1.09004 * 109.47344 * 149.99243 * 3 2 1 30 30 H 0.96993 * 119.99957 * 179.97438 * 7 6 4 31 31 H 0.97003 * 120.00355 * 4.45315 * 14 12 2 32 32 H 1.08002 * 120.02800 * 359.95877 * 16 15 14 33 33 H 1.07999 * 119.93119 * 179.97438 * 21 17 16 34 34 H 1.08002 * 119.97745 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6181 -0.6731 8 14 3.4381 3.4167 -3.4339 9 1 2.3081 4.2591 -3.9014 10 1 4.6982 4.2001 -3.4960 11 1 3.5562 2.2194 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4650 -2.3343 0.0005 15 6 2.1618 -3.5449 0.0954 16 6 3.4086 -3.6786 -0.5008 17 6 4.0939 -4.8740 -0.4051 18 7 5.4233 -5.0167 -1.0401 19 8 5.9120 -4.0804 -1.6468 20 8 6.0286 -6.0702 -0.9559 21 6 3.5402 -5.9375 0.2840 22 6 2.2989 -5.8085 0.8791 23 6 1.6077 -4.6150 0.7872 24 17 0.0523 -4.4510 1.5407 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0285 0.5138 29 1 3.1499 1.1384 0.5140 30 1 4.0302 4.4439 -0.8504 31 1 0.4972 -2.3357 -0.0651 32 1 3.8420 -2.8487 -1.0391 33 1 4.0781 -6.8711 0.3568 34 1 1.8693 -6.6407 1.4169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096008696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:45 Heat of formation + Delta-G solvation = 4.516289 kcal Electronic energy + Delta-G solvation = -23363.565753 eV Core-core repulsion = 19519.658544 eV Total energy + Delta-G solvation = -3843.907210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18096 -40.73568 -39.00697 -37.04803 -36.52105 -35.38019 -34.82265 -32.67637 -31.91403 -30.18830 -27.83616 -26.61522 -26.04756 -23.98052 -22.89402 -22.20059 -19.95250 -19.58841 -18.58491 -17.73030 -17.48845 -17.21820 -16.78452 -16.55898 -15.88417 -15.23113 -14.77898 -14.39102 -14.17181 -14.05288 -13.27812 -13.26285 -12.93566 -12.64768 -12.28040 -12.17701 -12.05556 -11.60108 -11.43873 -11.28673 -11.21060 -11.07374 -10.99496 -10.75038 -10.65809 -10.23102 -9.80369 -9.69321 -9.48983 -8.63186 -8.49842 -7.86589 -6.11317 -4.16873 -0.35451 0.64567 1.15727 1.27062 1.53929 2.66439 2.88842 3.27365 3.35335 3.39323 3.55715 4.06390 4.13401 4.37688 4.41023 4.50900 4.55716 5.11034 5.22453 5.23732 5.30685 5.39818 5.58836 5.67958 5.84888 5.96595 6.30722 6.44251 6.46247 7.13391 7.28875 7.42841 7.66005 7.84275 8.11877 8.25869 8.78259 8.93191 9.48862 10.96750 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.004447 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.151277 B = 6294.194842 C = 8124.816813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.603 5.603 3 C 0.258 3.742 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.696 3.304 13 O -0.561 6.561 14 N -0.689 5.689 15 C 0.199 3.801 16 C -0.050 4.050 17 C -0.020 4.020 18 N 0.027 4.973 19 O -0.141 6.141 20 O -0.164 6.164 21 C -0.074 4.074 22 C -0.088 4.088 23 C -0.034 4.034 24 Cl -0.041 7.041 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.265 0.735 31 H 0.410 0.590 32 H 0.186 0.814 33 H 0.160 0.840 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 -18.635 4.423 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.337 5.337 3 C 0.140 3.860 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.398 3.602 13 O -0.437 6.437 14 N -0.340 5.340 15 C 0.099 3.901 16 C -0.072 4.072 17 C -0.104 4.104 18 N 0.548 4.452 19 O -0.361 6.361 20 O -0.378 6.378 21 C -0.095 4.095 22 C -0.108 4.108 23 C -0.065 4.065 24 Cl -0.012 7.012 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.249 0.751 32 H 0.203 0.797 33 H 0.178 0.822 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.035 -18.179 4.864 20.875 hybrid contribution -0.238 0.422 -1.058 1.163 sum -9.272 -17.757 3.806 20.390 Atomic orbital electron populations 1.21662 0.81300 1.02608 1.00788 1.47549 1.05982 1.06097 1.74095 1.19356 0.92437 0.76408 0.97844 1.21396 1.37066 1.06477 0.92102 0.92397 1.24918 0.95123 0.96290 0.97565 1.69919 1.38083 1.14324 1.30831 0.86476 0.77739 0.78654 0.84450 1.20657 1.20963 1.19806 1.15926 0.85579 0.79951 0.78782 1.90932 1.11084 1.85161 1.56497 1.43077 1.10580 1.02955 1.77362 1.16888 0.92338 0.85664 0.95224 1.21329 0.93092 0.96805 0.95984 1.20984 0.86354 0.97687 1.05327 1.43515 1.02232 1.00259 0.99149 1.94641 1.69750 1.31867 1.39821 1.94500 1.61535 1.16739 1.65008 1.20865 0.95046 0.98536 0.95047 1.20795 0.93365 0.96490 1.00170 1.21132 0.90591 0.95969 0.98785 1.98401 1.25139 1.97844 1.79819 0.93211 0.89771 0.93234 0.94450 0.93449 0.92565 0.75070 0.79741 0.82202 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.24 59.84 0.61 1.75 16 2 N -0.60 -11.92 2.86 -188.74 -0.54 -12.46 16 3 C 0.26 6.43 5.16 -5.19 -0.03 6.40 16 4 C -0.53 -14.52 9.39 -34.44 -0.32 -14.85 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.70 13.65 8.12 -86.92 -0.71 12.95 16 13 O -0.56 -13.32 13.34 5.29 0.07 -13.25 16 14 N -0.69 -9.99 4.93 -14.20 -0.07 -10.06 16 15 C 0.20 2.70 6.31 -83.64 -0.53 2.17 16 16 C -0.05 -0.77 8.20 -39.40 -0.32 -1.10 16 17 C -0.02 -0.27 6.85 -79.97 -0.55 -0.82 16 18 N 0.03 0.43 4.45 33.95 0.15 0.58 16 19 O -0.14 -2.55 18.44 -29.46 -0.54 -3.10 16 20 O -0.16 -2.46 18.44 -29.46 -0.54 -3.01 16 21 C -0.07 -0.73 9.55 -39.56 -0.38 -1.11 16 22 C -0.09 -0.73 9.82 -39.58 -0.39 -1.12 16 23 C -0.03 -0.35 6.34 -39.32 -0.25 -0.60 16 24 Cl -0.04 -0.36 27.96 -51.86 -1.45 -1.81 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 27 H 0.05 0.54 6.30 -51.93 -0.33 0.22 16 28 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 29 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.41 4.74 5.78 -40.82 -0.24 4.50 16 32 H 0.19 3.45 5.75 -52.49 -0.30 3.15 16 33 H 0.16 1.20 7.60 -52.49 -0.40 0.80 16 34 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -32.45 321.32 -8.20 -40.65 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -2.88 Total: 0.95 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.95 Total: 5.36 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.28 Total: -47.12 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -1.02 Total: -19.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.45 Total: -1.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.45 -8.20 -40.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096008696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.165 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds