Wall clock time and date at job start Tue Mar 31 2020 04:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00168 * 2 1 4 4 C 1.50696 * 109.47183 * 269.99721 * 3 2 1 5 5 H 1.07999 * 119.99846 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99959 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00355 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99791 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46937 * 90.00549 * 8 6 4 10 10 H 1.48504 * 109.47186 * 210.00303 * 8 6 4 11 11 H 1.48498 * 109.47466 * 330.00536 * 8 6 4 12 12 C 1.34777 * 120.00275 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00186 * 180.02562 * 12 2 1 14 14 N 1.34773 * 119.99705 * 0.02562 * 12 2 1 15 15 C 1.40001 * 120.00186 * 184.46143 * 14 12 2 16 16 C 1.38844 * 120.07121 * 325.29971 * 15 14 12 17 17 C 1.38122 * 119.94435 * 179.97438 * 16 15 14 18 18 N 1.48019 * 119.95565 * 180.02562 * 17 16 15 19 19 O 1.21801 * 119.99722 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00188 * 179.97438 * 18 17 16 21 21 C 1.38287 * 120.09099 * 359.97438 * 17 16 15 22 22 C 1.38257 * 120.15011 * 0.02562 * 21 17 16 23 23 C 1.38229 * 120.05486 * 359.97438 * 22 21 17 24 24 Cl 1.73604 * 120.04807 * 180.28189 * 23 22 21 25 25 H 1.08994 * 109.47619 * 270.00073 * 1 2 3 26 26 H 1.09003 * 109.46890 * 30.00218 * 1 2 3 27 27 H 1.09005 * 109.47003 * 149.99698 * 1 2 3 28 28 H 1.09008 * 109.47035 * 29.99456 * 3 2 1 29 29 H 1.09004 * 109.47344 * 149.99243 * 3 2 1 30 30 H 0.96993 * 119.99957 * 179.97438 * 7 6 4 31 31 H 0.97003 * 120.00355 * 4.45315 * 14 12 2 32 32 H 1.08002 * 120.02800 * 359.95877 * 16 15 14 33 33 H 1.07999 * 119.93119 * 179.97438 * 21 17 16 34 34 H 1.08002 * 119.97745 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6181 -0.6731 8 14 3.4381 3.4167 -3.4339 9 1 2.3081 4.2591 -3.9014 10 1 4.6982 4.2001 -3.4960 11 1 3.5562 2.2194 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4650 -2.3343 0.0005 15 6 2.1618 -3.5449 0.0954 16 6 3.4086 -3.6786 -0.5008 17 6 4.0939 -4.8740 -0.4051 18 7 5.4233 -5.0167 -1.0401 19 8 5.9120 -4.0804 -1.6468 20 8 6.0286 -6.0702 -0.9559 21 6 3.5402 -5.9375 0.2840 22 6 2.2989 -5.8085 0.8791 23 6 1.6077 -4.6150 0.7872 24 17 0.0523 -4.4510 1.5407 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0285 0.5138 29 1 3.1499 1.1384 0.5140 30 1 4.0302 4.4439 -0.8504 31 1 0.4972 -2.3357 -0.0651 32 1 3.8420 -2.8487 -1.0391 33 1 4.0781 -6.8711 0.3568 34 1 1.8693 -6.6407 1.4169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096008696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:44 Heat of formation + Delta-G solvation = -16.000292 kcal Electronic energy + Delta-G solvation = -23364.455419 eV Core-core repulsion = 19519.658544 eV Total energy + Delta-G solvation = -3844.796875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.37334 -42.01056 -40.22141 -37.86688 -37.75161 -36.91790 -36.22781 -34.70667 -32.87816 -31.39709 -29.59258 -27.75707 -27.48363 -25.51503 -24.18069 -23.45337 -21.35026 -20.77310 -19.81039 -19.10032 -18.72076 -18.70334 -18.14974 -17.93126 -17.05819 -16.80699 -16.46120 -15.68946 -15.34444 -15.20353 -14.77632 -14.41842 -14.11389 -13.95676 -13.65584 -13.51749 -13.17895 -13.02046 -12.87048 -12.81952 -12.56322 -12.42764 -12.36524 -12.27260 -12.22887 -11.97910 -11.75179 -11.23417 -10.65405 -10.49158 -9.85957 -9.41541 -8.24778 -6.38979 -1.44091 -0.29881 0.05811 0.21263 0.65524 1.34756 1.37732 1.40239 1.49556 1.81199 2.16187 2.36830 2.78814 3.06072 3.21511 3.42970 3.49490 3.69128 4.15538 4.22064 4.38683 4.48863 4.58978 4.69103 4.76933 4.88415 4.90431 5.09297 5.16792 5.31864 5.45993 5.65140 5.84514 6.01467 6.40232 6.68900 6.80678 7.25713 7.41300 8.82154 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.004447 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.151277 B = 6294.194842 C = 8124.816813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.612 5.612 3 C 0.275 3.725 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.964 3.036 9 H -0.261 1.261 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.693 3.307 13 O -0.614 6.614 14 N -0.671 5.671 15 C 0.175 3.825 16 C -0.076 4.076 17 C -0.036 4.036 18 N 0.029 4.971 19 O -0.237 6.237 20 O -0.110 6.110 21 C -0.048 4.048 22 C -0.064 4.064 23 C -0.016 4.016 24 Cl -0.016 7.016 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.002 0.998 30 H 0.268 0.732 31 H 0.425 0.575 32 H 0.138 0.862 33 H 0.197 0.803 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 -22.001 5.254 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.346 5.346 3 C 0.154 3.846 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.186 1.186 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.395 3.605 13 O -0.493 6.493 14 N -0.323 5.323 15 C 0.076 3.924 16 C -0.099 4.099 17 C -0.120 4.120 18 N 0.546 4.454 19 O -0.433 6.433 20 O -0.342 6.342 21 C -0.068 4.068 22 C -0.083 4.083 23 C -0.047 4.047 24 Cl 0.014 6.986 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.077 0.923 31 H 0.267 0.733 32 H 0.156 0.844 33 H 0.214 0.786 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.678 -21.398 5.621 25.017 hybrid contribution 0.468 1.152 -1.145 1.690 sum -11.210 -20.246 4.476 23.571 Atomic orbital electron populations 1.21974 0.77588 1.04134 1.03074 1.47376 1.08181 1.04653 1.74360 1.18773 0.91062 0.78677 0.96120 1.21680 1.37056 1.06509 0.93035 0.92958 1.25780 0.94838 0.96451 1.01696 1.70028 1.38810 1.14802 1.32890 0.85467 0.78150 0.78133 0.79366 1.18558 1.20744 1.20193 1.16063 0.85038 0.81085 0.78306 1.90913 1.13667 1.86186 1.58532 1.42602 1.10973 1.01831 1.76890 1.16978 0.92232 0.86125 0.97050 1.20966 0.94658 0.96639 0.97616 1.21136 0.85234 0.98636 1.06976 1.43841 1.03014 0.99800 0.98772 1.94678 1.71586 1.32978 1.44080 1.94419 1.61511 1.16032 1.62283 1.21396 0.95224 0.98052 0.92142 1.21400 0.91918 0.96647 0.98340 1.21269 0.91290 0.95227 0.96917 1.98424 1.23355 1.97818 1.79047 0.90445 0.90266 0.89748 0.94730 0.98034 0.92341 0.73267 0.84450 0.78613 0.77200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 10.24 127.77 1.31 3.31 16 2 N -0.61 -24.95 2.86 -869.31 -2.48 -27.44 16 3 C 0.27 14.46 5.16 85.63 0.44 14.90 16 4 C -0.54 -30.98 9.39 25.60 0.24 -30.74 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.68 5.46 84.65 0.46 1.14 16 7 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 8 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 9 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 C 0.69 28.48 8.12 179.06 1.45 29.93 16 13 O -0.61 -31.68 13.34 -4.00 -0.05 -31.74 16 14 N -0.67 -19.32 4.93 -317.09 -1.56 -20.88 16 15 C 0.17 4.64 6.31 38.15 0.24 4.88 16 16 C -0.08 -2.49 8.20 22.39 0.18 -2.30 16 17 C -0.04 -0.97 6.85 36.36 0.25 -0.72 16 18 N 0.03 0.93 4.45 -46.50 -0.21 0.73 16 19 O -0.24 -9.52 18.44 18.89 0.35 -9.17 16 20 O -0.11 -3.13 18.44 18.89 0.35 -2.78 16 21 C -0.05 -0.74 9.55 22.29 0.21 -0.53 16 22 C -0.06 -0.71 9.82 22.27 0.22 -0.49 16 23 C -0.02 -0.28 6.34 22.44 0.14 -0.14 16 24 Cl -0.02 -0.21 27.96 -2.72 -0.08 -0.29 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 27 H 0.08 1.65 6.30 -2.38 -0.02 1.64 16 28 H 0.03 1.81 8.07 -2.38 -0.02 1.79 16 29 H 0.00 0.09 7.42 -2.39 -0.02 0.08 16 30 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.43 9.05 5.78 -92.71 -0.54 8.51 16 32 H 0.14 5.86 5.75 -2.91 -0.02 5.85 16 33 H 0.20 1.70 7.60 -2.91 -0.02 1.68 16 34 H 0.21 0.33 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -79.12 321.32 4.42 -74.70 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.64 Total: 5.72 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 5.15 Total: 19.25 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.97 Total: -102.91 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: 0.64 Total: -43.69 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.08 Total: -0.29 kcal Total: -79.12 4.42 -74.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096008696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.703 kcal (2) G-P(sol) polarization free energy of solvation -79.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds