Wall clock time and date at job start Tue Mar 31 2020 04:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86791 * 119.99841 * 2 1 4 4 H 1.48493 * 109.47340 * 269.99813 * 3 2 1 5 5 H 1.48501 * 109.47728 * 30.00285 * 3 2 1 6 6 H 1.48507 * 109.47106 * 149.99998 * 3 2 1 7 7 C 1.38946 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99842 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00231 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00084 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00119 * 179.97438 * 10 9 7 13 13 C 1.53005 * 109.47189 * 180.02562 * 12 10 9 14 14 O 1.42898 * 109.46827 * 180.02562 * 13 12 10 15 15 C 1.35919 * 116.99795 * 179.97438 * 14 13 12 16 16 C 1.38719 * 120.05837 * 359.96051 * 15 14 13 17 17 C 1.38148 * 119.95689 * 180.02562 * 16 15 14 18 18 C 1.38285 * 120.06801 * 359.97438 * 17 16 15 19 19 C 1.38238 * 120.11971 * 0.02562 * 18 17 16 20 20 C 1.38241 * 120.04751 * 359.97316 * 19 18 17 21 21 Br 1.89097 * 120.03989 * 180.02562 * 20 19 18 22 22 H 0.97007 * 119.99864 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99514 * 0.02562 * 9 7 2 24 24 H 1.09003 * 109.47146 * 60.00433 * 12 10 9 25 25 H 1.09002 * 109.47279 * 300.00439 * 12 10 9 26 26 H 1.08995 * 109.47226 * 59.99678 * 13 12 10 27 27 H 1.08997 * 109.46597 * 299.99978 * 13 12 10 28 28 H 1.08003 * 120.02392 * 359.97438 * 16 15 14 29 29 H 1.07992 * 119.96574 * 180.27286 * 17 16 15 30 30 H 1.07997 * 119.93887 * 179.97438 * 18 17 16 31 31 H 1.07998 * 119.97742 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0011 13 6 2.2379 -6.0259 0.0016 14 8 1.5233 -7.2634 0.0016 15 6 2.2635 -8.4033 0.0015 16 6 3.6489 -8.3322 0.0006 17 6 4.3992 -9.4921 -0.0001 18 6 3.7706 -10.7239 0.0007 19 6 2.3903 -10.7983 0.0016 20 6 1.6347 -9.6406 0.0023 21 35 -0.2535 -9.7426 0.0042 22 1 -0.4850 0.8401 -0.0004 23 1 0.3533 -2.3906 -0.0002 24 1 0.6167 -4.9209 -0.8887 25 1 0.6172 -4.9204 0.8913 26 1 2.8646 -5.9678 0.8915 27 1 2.8645 -5.9685 -0.8884 28 1 4.1406 -7.3706 -0.0004 29 1 5.4777 -9.4369 0.0037 30 1 4.3592 -11.6294 -0.0002 31 1 1.9018 -11.7614 0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126721742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:57 Heat of formation + Delta-G solvation = -73.793542 kcal Electronic energy + Delta-G solvation = -17101.889434 eV Core-core repulsion = 14007.866018 eV Total energy + Delta-G solvation = -3094.023416 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26907 -40.17378 -38.48544 -36.08800 -33.59686 -33.33701 -32.64910 -31.02248 -29.84431 -27.40082 -25.32384 -23.25595 -22.84531 -20.99373 -19.93618 -19.38009 -17.69216 -17.40849 -16.96760 -16.80061 -16.46151 -15.84004 -15.74503 -15.43333 -14.54423 -14.40657 -14.30555 -14.25486 -13.52310 -13.16107 -12.86245 -12.75148 -12.71255 -12.44477 -12.12317 -11.87220 -11.83477 -11.78492 -11.55798 -11.15050 -10.49881 -10.07834 -9.87864 -9.23789 -8.50504 -6.00433 0.08732 0.32689 0.70891 1.36636 1.41682 1.54334 1.89348 1.95833 2.31391 2.62390 3.16659 3.30916 3.69966 3.79283 3.96719 4.00002 4.17384 4.27399 4.31966 4.46396 4.60868 4.73426 4.77623 4.81665 5.10516 5.26416 5.38269 5.43944 5.70531 5.93685 6.21332 6.51233 7.05653 7.47562 8.00565 8.66675 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.002962 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.512432 B = 9452.299233 C =10478.366138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.634 6.634 12 C -0.117 4.117 13 C 0.092 3.908 14 O -0.314 6.314 15 C 0.135 3.865 16 C -0.217 4.217 17 C -0.063 4.063 18 C -0.148 4.148 19 C -0.056 4.056 20 C -0.146 4.146 21 Br -0.047 7.047 22 H 0.279 0.721 23 H 0.398 0.602 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.167 0.833 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -23.373 -0.001 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.522 6.522 12 C -0.157 4.157 13 C 0.016 3.984 14 O -0.228 6.228 15 C 0.087 3.913 16 C -0.237 4.237 17 C -0.081 4.081 18 C -0.167 4.167 19 C -0.076 4.076 20 C -0.226 4.226 21 Br 0.038 6.962 22 H 0.089 0.911 23 H 0.233 0.767 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.175 0.825 30 H 0.184 0.816 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.178 -23.198 0.005 23.228 hybrid contribution 0.260 1.262 -0.010 1.289 sum 1.438 -21.936 -0.005 21.983 Atomic orbital electron populations 1.69681 1.06954 1.29532 1.49651 1.26103 0.96548 1.02605 0.95913 0.84892 0.77924 0.76593 0.78733 1.19533 1.19555 1.19534 1.19730 0.92889 0.83828 1.50340 0.89888 1.41917 1.09527 1.04679 1.63964 1.20402 0.87881 0.85875 0.82806 1.90497 1.15671 1.88196 1.57884 1.21191 0.98641 0.89576 1.06254 1.22270 0.93824 0.79936 1.02345 1.86055 1.35921 1.12795 1.87984 1.18947 0.90778 0.85910 0.95670 1.21552 0.91844 1.01576 1.08723 1.21488 1.01541 0.91247 0.93839 1.21482 0.93638 0.99061 1.02532 1.21313 0.94385 0.96527 0.95329 1.21308 0.91279 0.93702 1.16345 1.96666 1.02909 1.98731 1.97917 0.91129 0.76742 0.87443 0.87450 0.91622 0.91629 0.84814 0.82506 0.81592 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 1.00 42.29 29.55 68.60 2.03 44.31 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.57 -28.84 5.29 -306.99 -1.62 -30.46 16 10 C 0.44 20.75 7.78 87.66 0.68 21.43 16 11 O -0.63 -34.00 15.56 -3.08 -0.05 -34.05 16 12 C -0.12 -4.05 6.07 29.85 0.18 -3.87 16 13 C 0.09 2.98 4.03 71.98 0.29 3.27 16 14 O -0.31 -9.66 9.47 -92.64 -0.88 -10.54 16 15 C 0.13 3.70 6.68 22.52 0.15 3.85 16 16 C -0.22 -5.24 9.04 22.36 0.20 -5.04 16 17 C -0.06 -1.10 10.04 22.26 0.22 -0.88 16 18 C -0.15 -2.18 10.04 22.28 0.22 -1.95 16 19 C -0.06 -0.99 9.78 22.27 0.22 -0.77 16 20 C -0.15 -3.53 6.24 22.40 0.14 -3.39 16 21 Br -0.05 -1.13 33.16 -20.37 -0.68 -1.80 16 22 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 23 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 24 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 25 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 26 H 0.07 2.18 7.62 -2.39 -0.02 2.17 16 27 H 0.07 2.18 7.62 -2.39 -0.02 2.16 16 28 H 0.13 3.35 6.30 -2.91 -0.02 3.33 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -65.52 297.64 3.11 -62.41 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.43 Total: 24.78 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 3.59 Total: -5.69 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.34 Total: -79.44 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.93 Total: -44.58 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 35 Polarization: -1.13 SS G_CDS: -0.68 Total: -1.80 kcal Total: -65.52 3.11 -62.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126721742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.381 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds