Wall clock time and date at job start Tue Mar 31 2020 04:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47164 * 240.57820 * 3 2 1 5 5 C 1.36968 * 120.00482 * 274.37027 * 4 3 2 6 6 H 1.07999 * 120.00317 * 124.68449 * 5 4 3 7 7 C 1.38975 * 119.99763 * 304.68987 * 5 4 3 8 8 N 1.31416 * 120.00001 * 183.20289 * 7 5 4 9 9 Si 1.86800 * 120.00004 * 3.19840 * 7 5 4 10 10 H 1.48506 * 109.46750 * 94.48391 * 9 7 5 11 11 H 1.48500 * 109.47023 * 214.48431 * 9 7 5 12 12 H 1.48501 * 109.47038 * 334.48660 * 9 7 5 13 13 C 1.34780 * 119.99933 * 94.36822 * 4 3 2 14 14 O 1.21672 * 119.99432 * 1.88231 * 13 4 3 15 15 C 1.47103 * 120.00299 * 181.88357 * 13 4 3 16 16 C 1.36096 * 123.47525 * 171.21227 * 15 13 4 17 17 S 1.70444 * 110.81168 * 180.29209 * 16 15 13 18 18 C 1.75505 * 92.44897 * 359.71970 * 17 16 15 19 19 S 1.76202 * 124.70101 * 179.97438 * 18 17 16 20 20 C 1.81397 * 104.45269 * 270.02684 * 19 18 17 21 21 O 1.42104 * 104.27847 * 26.10084 * 19 18 17 22 22 O 1.42101 * 104.27683 * 153.95299 * 19 18 17 23 23 C 1.32763 * 110.59524 * 0.02562 * 18 17 16 24 24 H 4.40638 * 5.51391 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46679 * 120.58409 * 3 2 1 26 26 H 1.08998 * 109.47072 * 0.58131 * 3 2 1 27 27 H 0.96997 * 120.00358 * 180.02562 * 8 7 5 28 28 H 1.08004 * 124.59063 * 359.97438 * 16 15 13 29 29 H 1.09004 * 109.47203 * 60.00237 * 20 19 18 30 30 H 1.08995 * 109.47461 * 179.97438 * 20 19 18 31 31 H 1.09004 * 109.47213 * 300.00240 * 20 19 18 32 32 H 1.08000 * 123.45226 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.6794 1.2031 5 6 3.2766 2.0416 1.2108 6 1 2.7825 2.6320 1.9683 7 6 4.0569 2.6641 0.2438 8 7 4.2450 3.9640 0.2881 9 14 4.8384 1.6531 -1.1187 10 1 3.9564 1.6670 -2.3134 11 1 6.1587 2.2343 -1.4713 12 1 5.0213 0.2544 -0.6546 13 6 3.4429 -0.0367 2.3024 14 8 3.3489 -1.2497 2.2844 15 6 3.8934 0.6482 3.5238 16 6 4.0573 0.0198 4.7198 17 16 4.5806 1.1175 5.9140 18 6 4.5905 2.4596 4.7831 19 16 5.0404 4.1132 5.1926 20 6 3.4842 4.8922 5.7044 21 8 5.9167 3.9734 6.3025 22 8 5.4952 4.6668 3.9654 23 6 4.2110 2.0563 3.5764 24 1 -1.0500 0.0001 -0.0002 25 1 3.0091 0.5237 -0.8847 26 1 3.0098 -1.0268 -0.0104 27 1 4.7893 4.3986 -0.3870 28 1 3.8751 -1.0311 4.8903 29 1 3.0750 4.3577 6.5618 30 1 3.6707 5.9303 5.9793 31 1 2.7717 4.8566 4.8802 32 1 4.1427 2.7144 2.7229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281041062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:20 Heat of formation + Delta-G solvation = 16.447766 kcal Electronic energy + Delta-G solvation = -21648.446259 eV Core-core repulsion = 18217.560264 eV Total energy + Delta-G solvation = -3430.885996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 313.027 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.44022 -36.81386 -36.32912 -35.61002 -35.43565 -32.84768 -31.75518 -29.83136 -29.19684 -27.51403 -25.25637 -23.80682 -21.30470 -18.96945 -18.86818 -18.44296 -17.88951 -16.83634 -16.07985 -15.95040 -15.74112 -15.28852 -14.74449 -14.56194 -14.20735 -13.60519 -13.32080 -13.12015 -13.05545 -12.92725 -12.55227 -12.25337 -12.09336 -11.96354 -11.73554 -11.62008 -11.29574 -11.10591 -10.90973 -10.70328 -10.55842 -10.32571 -9.94169 -9.46827 -9.24917 -8.98724 -8.88897 -8.05101 -7.89753 -6.61059 -4.49715 0.32156 0.95314 1.78903 2.11504 2.38411 2.96255 3.12056 3.13578 3.15626 3.20871 3.41788 3.97160 4.04306 4.17230 4.45656 4.48988 4.69726 4.88611 5.01024 5.19337 5.35582 5.66947 5.74111 5.88102 5.94292 6.10644 6.35570 6.41836 6.42879 6.99610 7.25555 7.82249 7.91857 8.15400 8.70867 9.01299 9.38888 10.42517 Molecular weight = 313.03amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.006190 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.367534 B = 4522.384737 C = 5472.187060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.165 4.165 3 C 0.203 3.797 4 N -0.457 5.457 5 C -0.370 4.370 6 H 0.110 0.890 7 C 0.074 3.926 8 N -0.841 5.841 9 Si 0.878 3.122 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.257 1.257 13 C 0.556 3.444 14 O -0.587 6.587 15 C -0.147 4.147 16 C -0.164 4.164 17 S 0.221 5.779 18 C -0.811 4.811 19 S 2.523 3.477 20 C -0.651 4.651 21 O -0.947 6.947 22 O -0.911 6.911 23 C 0.045 3.955 24 H 0.212 0.788 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.283 0.717 28 H 0.174 0.826 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 0.359 7.893 8.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.166 4.166 3 C 0.081 3.919 4 N -0.177 5.177 5 C -0.497 4.497 6 H 0.127 0.873 7 C -0.138 4.138 8 N -0.473 5.473 9 Si 0.704 3.296 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.181 1.181 13 C 0.345 3.655 14 O -0.472 6.472 15 C -0.165 4.165 16 C -0.304 4.304 17 S 0.487 5.513 18 C -1.011 5.011 19 S 2.699 3.301 20 C -0.801 4.801 21 O -0.944 6.944 22 O -0.908 6.908 23 C 0.014 3.986 24 H 0.229 0.771 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.192 0.808 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.334 0.173 9.291 9.388 hybrid contribution -1.103 -0.720 -2.375 2.716 sum -2.437 -0.547 6.917 7.354 Atomic orbital electron populations 1.24668 0.95625 1.02900 1.01345 1.23724 0.94867 0.98518 0.99506 1.18731 0.83692 0.99137 0.90340 1.43388 1.56977 1.07217 1.10126 1.19019 1.32273 0.79647 1.18714 0.87312 1.25532 0.94592 0.95639 0.97989 1.69606 1.35138 1.08387 1.34129 0.86843 0.79399 0.81438 0.81883 1.19480 1.20694 1.18068 1.17711 0.78442 0.85722 0.83603 1.90666 1.58085 1.13713 1.84700 1.20450 1.07823 0.93883 0.94339 1.25921 1.01435 1.05215 0.97794 1.82517 1.63190 0.95683 1.09860 1.35392 1.32063 1.26477 1.07162 1.04623 0.76673 0.73843 0.74939 1.30238 1.23372 1.13359 1.13133 1.93551 1.60568 1.85802 1.54474 1.93684 1.77675 1.76596 1.42873 1.23530 0.82253 0.95784 0.97027 0.77075 0.90088 0.88394 0.90578 0.80813 0.85385 0.85289 0.84457 0.75529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.02 19.25 29.55 0.57 -3.46 16 2 C -0.16 -3.40 13.65 -37.12 -0.51 -3.90 16 3 C 0.20 4.39 4.41 -6.83 -0.03 4.36 16 4 N -0.46 -10.69 2.00 -119.26 -0.24 -10.93 16 5 C -0.37 -8.93 6.45 -14.98 -0.10 -9.03 16 6 H 0.11 2.68 6.28 -52.49 -0.33 2.35 16 7 C 0.07 1.83 5.30 -17.46 -0.09 1.74 16 8 N -0.84 -21.58 13.96 55.50 0.77 -20.80 16 9 Si 0.88 19.38 24.84 -169.99 -4.22 15.16 16 10 H -0.27 -5.70 7.10 56.52 0.40 -5.29 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.26 -5.64 6.45 56.52 0.36 -5.28 16 13 C 0.56 12.97 7.61 -12.66 -0.10 12.87 16 14 O -0.59 -14.45 16.26 5.21 0.08 -14.36 16 15 C -0.15 -3.04 5.91 -104.63 -0.62 -3.66 16 16 C -0.16 -2.83 10.53 29.96 0.32 -2.52 16 17 S 0.22 3.30 22.78 -107.50 -2.45 0.85 16 18 C -0.81 -13.92 6.16 28.86 0.18 -13.74 16 19 S 2.52 38.39 5.93 -107.50 -0.64 37.75 16 20 C -0.65 -6.69 10.80 101.05 1.09 -5.60 16 21 O -0.95 -15.76 17.74 -57.54 -1.02 -16.78 16 22 O -0.91 -17.85 17.61 -57.54 -1.01 -18.87 16 23 C 0.04 0.91 8.17 -39.02 -0.32 0.59 16 24 H 0.21 2.76 7.80 -54.09 -0.42 2.34 16 25 H 0.08 1.73 3.64 -51.93 -0.19 1.54 16 26 H 0.10 2.06 7.27 -51.93 -0.38 1.69 16 27 H 0.28 6.88 8.31 -40.82 -0.34 6.55 16 28 H 0.17 2.72 8.04 -52.48 -0.42 2.30 16 29 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.14 1.39 8.14 -51.92 -0.42 0.97 16 32 H 0.23 5.13 4.15 -52.49 -0.22 4.91 16 LS Contribution 309.92 15.07 4.67 4.67 Total: -1.00 -32.15 309.92 -6.06 -38.20 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -2.40 Total: 7.44 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 0.39 Total: -22.34 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.54 Total: -31.73 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -1.95 Total: -50.01 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.22 Total: 15.16 kcal Atomic # 16 Polarization: 41.69 SS G_CDS: -3.09 Total: 38.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.15 -6.06 -38.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281041062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.652 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds